CK934385

Overview
NameCK934385
Unique NameCK934385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934385_ssr401 microsatellite CK934385_ssr401:401..412. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2967 contig Csv1_Contig2967:57..839. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_FLAPR (Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei GN=GDCSH PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.685e-49
Identity = 94/138 (68.12%), Postives = 112/138 (81.16%), Query Frame = 3
Query:   93 SVFHRGFSSVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEEDSKH 506
            S   R FSSV+  LKYA+SHEWVK +G+ ATIGITDHAQDHLG+VV+V+LPE G +V +   FGAVESVKATSDVNSP+SG++VEVN +LS +P L+NSSPYEDGW+IKV+  N  EL  LM A +YTKFCEEEDS H
Sbjct:   25 SPLSRCFSSVLDGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDSAH 162          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_FLAAN (Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.981e-49
Identity = 93/138 (67.39%), Postives = 112/138 (81.16%), Query Frame = 3
Query:   93 SVFHRGFSSVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEEDSKH 506
            S   R FSSV+  LKYA+SHEWVK +G+ ATIGITDHAQDHLG+VV+V+LPE G +V +   FGAVESVKATSDVNSP+SG++VEVN +LS +P L+NSSPYEDGW+IKV+  N  EL  LM A +YTKFCEEED+ H
Sbjct:   25 SPLSRCFSSVLDGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDAAH 162          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_PEA (Glycine cleavage system H protein, mitochondrial OS=Pisum sativum GN=GDCSH PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.282e-47
Identity = 89/134 (66.42%), Postives = 110/134 (82.09%), Query Frame = 3
Query:  105 RGFSSVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEEDSKH 506
            R FS+V+  LKYA SHEWVK +G+ ATIGITDHAQDHLG+VV+VELPE GV+V +   FGAVESVKATSDVNSP+SG+V+EVN  L+  P L+NSSPYEDGW+IK++  +  EL+ L+ A +YTKFCEEED+ H
Sbjct:   32 RCFSNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCEEEDAAH 165          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH2_ARATH (Probable glycine cleavage system H protein 2, mitochondrial OS=Arabidopsis thaliana GN=At1g32470 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.599e-47
Identity = 88/134 (65.67%), Postives = 112/134 (83.58%), Query Frame = 3
Query:  105 RGFSSVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEEDSKH 506
            R FSSV++ LKYA+SHEWVK +G+ ATIGITDHAQDHLG+VV+VELPE   +V ++ SFGAVESVKATS++ SP+SG+V+EVN +L+ SP L+NSSPYEDGW+IKV+  +  EL+ LM   +YTKFCEEED+ H
Sbjct:   33 RCFSSVLEGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLTESPGLINSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEEEDAAH 166          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH1_ARATH (Glycine cleavage system H protein 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSH PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.127e-46
Identity = 86/136 (63.24%), Postives = 113/136 (83.09%), Query Frame = 3
Query:   99 FHRGFSSVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEEDSKH 506
            F R FS+V++ LKYA+SHEWVK +G+ ATIGIT HAQDHLG+VV+VELPE   +V ++ SFGAVESVKATS++ SP+SG+++EVN++L+ SP L+NSSPYEDGW+IKV+  +  EL+ LM   +YTKFCEEED+ H
Sbjct:   30 FSRCFSTVLEGLKYANSHEWVKHEGSVATIGITAHAQDHLGEVVFVELPEDNTSVSKEKSFGAVESVKATSEILSPISGEIIEVNKKLTESPGLINSSPYEDGWMIKVKPSSPAELESLMGPKEYTKFCEEEDAAH 165          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_ORYSJ (Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. japonica GN=GDCSH PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.084e-46
Identity = 87/132 (65.91%), Postives = 107/132 (81.06%), Query Frame = 3
Query:  105 RGFSSVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEEDS 500
            R FS+V+  LKY+ SHEWVK DG+ ATIGITDHAQ HLG+VV+VELPE G  V Q  +FG VESVKATSD+NSP+SG+VVEVN++LS +P L+NSSPYEDGW+IKV+  +  EL  L+D  +YTK CEEED+
Sbjct:   32 RYFSTVLDGLKYSSSHEWVKNDGSVATIGITDHAQGHLGEVVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVNDKLSETPGLINSSPYEDGWMIKVKPSSPSELDALLDPAKYTKHCEEEDA 163          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_ORYSI (Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. indica GN=GDCSH PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.084e-46
Identity = 87/132 (65.91%), Postives = 107/132 (81.06%), Query Frame = 3
Query:  105 RGFSSVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEEDS 500
            R FS+V+  LKY+ SHEWVK DG+ ATIGITDHAQ HLG+VV+VELPE G  V Q  +FG VESVKATSD+NSP+SG+VVEVN++LS +P L+NSSPYEDGW+IKV+  +  EL  L+D  +YTK CEEED+
Sbjct:   32 RYFSTVLDGLKYSSSHEWVKNDGSVATIGITDHAQGHLGEVVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVNDKLSETPGLINSSPYEDGWMIKVKPSSPSELDALLDPAKYTKHCEEEDA 163          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_FLATR (Glycine cleavage system H protein, mitochondrial OS=Flaveria trinervia GN=GDCSH PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.072e-45
Identity = 90/136 (66.18%), Postives = 108/136 (79.41%), Query Frame = 3
Query:   93 SVFHRGFSS--VIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            S   R FSS  V+  LKYA+SHEWVK +G+ ATIGITDHAQDHLG+VV+VELPEVG +V +   FGAVESVKATSDVNSP+SG++VEVN +L+ +P L+N SPYEDGW+IKV+  N  EL  LM   +YTKFCEEE
Sbjct:   25 SPLFRCFSSAAVLDGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEVGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLTKTPGLINKSPYEDGWMIKVKPSNPSELDSLMGPKEYTKFCEEE 160          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_MESCR (Glycine cleavage system H protein, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCSH PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.875e-43
Identity = 86/132 (65.15%), Postives = 104/132 (78.79%), Query Frame = 3
Query:  105 RGFSSVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEEDS 500
            R FS+V+  LKYA SHEWVK  G+ ATIGITDHAQ HLGDVV+ ELPE G  V     F +VESVKATSDVNSP+SG++VEVN +LS SP L+NSSPYE+GW++KV+  N  EL+ LM + +YTKFCEEED+
Sbjct:   32 RCFSTVLDGLKYASSHEWVKHGGSVATIGITDHAQGHLGDVVFAELPEGGA-VSAGKPFASVESVKATSDVNSPISGEIVEVNTKLSDSPGLLNSSPYEEGWMVKVKPSNPAELESLMGSKEYTKFCEEEDA 162          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_FLAPU (Glycine cleavage system H protein, mitochondrial (Fragment) OS=Flaveria pubescens GN=GDCSH PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.755e-43
Identity = 84/128 (65.62%), Postives = 103/128 (80.47%), Query Frame = 3
Query:   93 SVFHRGFSSVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYT 476
            S   R FSSV+  LKYA+SHEWVK +G+ AT+GITDHAQDHLG+VV+V+LPE G +V +   FGAVESVKATSDVNSP+SG++VEVN +LS +P L+NSSPYEDGW+IKV+  N  EL  LM A +YT
Sbjct:   25 SPLSRCFSSVLDGLKYANSHEWVKHEGSVATVGITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYT 152          
The following BLAST results are available for this feature:
BLAST of CK934385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_FLAPR2.685e-4968.12Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_FLAAN5.981e-4967.39Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_PEA3.282e-4766.42Glycine cleavage system H protein, mitochondrial O... [more]
GCSH2_ARATH5.599e-4765.67Probable glycine cleavage system H protein 2, mito... [more]
GCSH1_ARATH2.127e-4663.24Glycine cleavage system H protein 1, mitochondrial... [more]
GCSH_ORYSJ8.084e-4665.91Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_ORYSI8.084e-4665.91Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_FLATR3.072e-4566.18Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_MESCR2.875e-4365.15Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_FLAPU3.755e-4365.63Glycine cleavage system H protein, mitochondrial (... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_G06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934385 ID=CK934385; Name=CK934385; organism=Citrus sinensis; type=EST; length=822bp
GGGGGAAGTGCGTTCCGAAAGTGAAGTGAGAAACAAAAGACATGGCTTCA
AGGTTGTTGTGGGCTTCAAGGGCTGCTTCTTACCTCAGGATCTCTGTCTT
CCACAGAGGATTTTCTTCTGTTATAAAGGATCTAAAGTATGCTGACTCTC
ATGAATGGGTTAAGGTTGATGGTAACTCTGCAACCATTGGTATAACTGAC
CATGCTCAAGATCATTTAGGCGATGTTGTGTATGTTGAATTACCAGAGGT
AGGGGTTACAGTAAAGCAAGATGCCAGCTTTGGTGCAGTTGAAAGTGTCA
AGGCTACTAGTGATGTTAATTCTCCTGTTTCTGGGAAAGTGGTTGAAGTT
AATGAAGAGCTCAGCAGTTCACCTGCTTTGGTCAACTCAAGCCCATACGA
GGATGGATGGATTATAAAAGTGGAGATGGACAATGCTGGTGAATTGAAGA
AGTTGATGGATGCTGATCAATACACCAAGTTCTGTGAAGAAGAAGATTCA
AAACACTGAGTGAACCTCTGGCCGTGTAGGAATTCTCAGCACCCTTCCGG
AATGACCTATGTCATGCACGGAGAAACCATTCTCTATCAAGGAATCCAAA
AGTGCACGTTTTCTTTCTGGATGTTTTTATCCAAATATGTACTTCTATGT
CTCATTTACTGTCTTCAGGGCAATTGAGTTTGGTGGAATATTTCTATCTA
AACTGAGAATAATAATTTGGGGTGTGGAAGTGATGTAACCATTTGGTGGT
TTGAAATTTGTTAAGGGTTTTGATAATCAAAATTAACCATTTAGGAGAAA
AAAAAAAAAAAAAAAAAAAAAA
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