CK934472
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 8.177e-53 Identity = 98/115 (85.22%), Postives = 106/115 (92.17%), Query Frame = 2 Query: 5 TPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFF*SSGLGR*PGKES 349 TP QPY+EVFGLQRFRECELIHGRWAMLATLGA+TVEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFF GL P K++ Sbjct: 119 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKA 233 HSP 2 Score: 125.176 bits (313), Expect = 3.129e-28 Identity = 60/68 (88.24%), Postives = 62/68 (91.18%), Query Frame = 3 Query: 306 FFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS 509 FFDPLGLA+DP KKA LQLAEIKHARLAMV FLGFAVQA TGKGPLNNWATHLSDPLHTTI+DTF S Sbjct: 219 FFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 3.107e-52 Identity = 97/113 (85.84%), Postives = 104/113 (92.04%), Query Frame = 2 Query: 5 TPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFF*SSGLGR*PGK 343 TP QPY+EVFG+QRFRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFF GL P K Sbjct: 122 TPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEK 234 HSP 2 Score: 128.257 bits (321), Expect = 3.696e-29 Identity = 62/68 (91.18%), Postives = 63/68 (92.65%), Query Frame = 3 Query: 306 FFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS 509 FFDPLGLAADPEK A LQLAEIKHARLAMVAFLGFAVQA TGKGPLNNWATHLSDPLHTTI+DTF S Sbjct: 222 FFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 289
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 5.485e-49 Identity = 94/113 (83.19%), Postives = 100/113 (88.50%), Query Frame = 2 Query: 5 TPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFF*SSGLGR*PGK 343 TP QPYTEVFG+QRFRECELIHGRWAML TLGA+ VE LTGI WQDAGKVELVEGSSYLGQPLPFS+TTLIWIEVLV+GYIEFQRNSELDPEKR+YPGG +F GL P K Sbjct: 123 TPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEK 234 HSP 2 Score: 77.7962 bits (190), Expect = 5.729e-14 Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 3 Query: 306 FFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWAT 461 +FDPLGLAADPEK TL+LAEIKH+RLAMVAFL FA+QA TGKGP++ AT Sbjct: 222 YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 144.821 bits (364), Expect = 6.341e-45 Identity = 70/99 (70.71%), Postives = 80/99 (80.81%), Query Frame = 2 Query: 11 LQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKF 307 L PY+EVFGL RFRECELIHGRWAMLA LGAL E TG++W +AGKVEL +G+SY G LPFSIT LIWIEV+++G EF RNSE +PEKR YPGG F Sbjct: 121 LAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGGVF 218 HSP 2 Score: 57.7658 bits (138), Expect = 6.341e-45 Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 3 Query: 309 FDPLGLAADPEKKA-TLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWA 458 FDPL LA++ E++A L+ AEIKHARLAMV+F G+ VQA+ TG+G L + A Sbjct: 218 FDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA 268
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.837e-28 Identity = 42/93 (45.16%), Postives = 60/93 (64.52%), Query Frame = 2 Query: 38 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEG--SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKF 307 L+R++E ELIH RWAMLA G + E L W A + + G ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F Sbjct: 81 LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAF 173 HSP 2 Score: 68.5514 bits (166), Expect = 2.837e-28 Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 3 Query: 309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAVVTGKGPLNNWATHLSDPLHTTILDTFI 506 FDPLG + DP K L++ EIK+ RLA++A +GF V Q+ G GPL N ATHL+DP H I D I Sbjct: 173 FDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVII 239
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 5.213e-23 Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 3 Query: 309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTIL 494 FDPLGLA DPE+ A L++ EIK+ RLAM A LGF +QA VTG+GP+ N A HLSDP +L Sbjct: 206 FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLL 267 HSP 2 Score: 50.447 bits (119), Expect = 5.213e-23 Identity = 32/99 (32.32%), Postives = 53/99 (53.54%), Query Frame = 2 Query: 44 RFRECELIHGRWAMLATLGALTVEWLT--------GITWQDAGKVELVEGS--SYLGQPLPFSITTLIWIEVLVIGYIEFQR-NSELDPEKRLYPGGKF 307 +++ ELIH RWAML G + E L W G + L++G+ +Y G+ +P ++ + EV+++G E+ R + LD E +L+PGG F Sbjct: 109 KYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPF 206
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 9.443e-22 Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3 Query: 309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482 FDPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 195 FDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252 HSP 2 Score: 46.9802 bits (110), Expect = 9.443e-22 Identity = 39/103 (37.86%), Postives = 50/103 (48.54%), Query Frame = 2 Query: 44 RFRECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQRNSELDP----EKRLYPGGKF 307 R RE E+IH RWAML LG + E L G+ W AG EG YLG P ++ IW +V+++G +E R + P E LYPGG F Sbjct: 93 RNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSF 195
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.230e-21 Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 3 Query: 309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 476 FDPLGLA DP+ A L++ EIK+ RLAM + LGF VQA+VTGKGP+ N HL+DP Sbjct: 182 FDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADP 237 HSP 2 Score: 51.2174 bits (121), Expect = 1.230e-21 Identity = 41/105 (39.05%), Postives = 53/105 (50.48%), Query Frame = 2 Query: 44 RFRECELIHGRWAMLATLGALTVEWLT---GI-----TWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR---NSE--LDPEKRLYPGGKF 307 R+RE ELIH RWA+L LG LT E L+ G+ W AG +G +YLG SI + ++V+++G E R SE LD LYPGG F Sbjct: 78 RYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPF 182
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.599e-21 Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 3 Query: 309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482 FDPLGLA DPE+ A L++ E+K+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 193 FDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 250 HSP 2 Score: 45.0542 bits (105), Expect = 1.599e-21 Identity = 38/103 (36.89%), Postives = 49/103 (47.57%), Query Frame = 2 Query: 50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPL---PFSITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307 RE E+IH RWAML LG + E L G+ W AG EG YLG P SI ++ +V+++G +E R +DP LYPGG F Sbjct: 94 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDP---LYPGGSF 193
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.599e-21 Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3 Query: 309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482 FDPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 190 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 247 HSP 2 Score: 46.9802 bits (110), Expect = 1.599e-21 Identity = 38/103 (36.89%), Postives = 50/103 (48.54%), Query Frame = 2 Query: 50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307 RE E+IH RWAML LG + E L G+ W AG EG YLG P ++ IW ++V+++G +E R +DP LYPGG F Sbjct: 91 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF 190 The following BLAST results are available for this feature:
BLAST of CK934472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934472 ID=CK934472; Name=CK934472; organism=Citrus sinensis; type=EST; length=671bpback to top |