CK934498

Overview
NameCK934498
Unique NameCK934498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934498_ssr494 microsatellite CK934498_ssr494:494..505. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934498 vs. ExPASy Swiss-Prot
Match: ATP5E_ARATH (ATP synthase subunit epsilon, mitochondrial OS=Arabidopsis thaliana GN=At1g51650 PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 4.970e-32
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 1 
Query:   64 MASNAAVPFWRAAGMTYISYSNICANLVRNCLKEPYKTEALTREKVHFSISKWTDGKPQKPTIRSDTPE 270
            MASNAAVPFWRAAGMTYISYSNICAN+VRNCLKEP+K EALTREKVHFS+SKW DGKPQKP +RSDTPE
Sbjct:    1 MASNAAVPFWRAAGMTYISYSNICANIVRNCLKEPHKAEALTREKVHFSLSKWADGKPQKPVLRSDTPE 69
[Close]
BLAST of CK934498 vs. ExPASy Swiss-Prot
Match: ATP5E_IPOBA (ATP synthase subunit epsilon, mitochondrial OS=Ipomoea batatas PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 9.374e-31
Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:   64 MASNAAVPFWRAAGMTYISYSNICANLVRNCLKEPYKTEALTREKVHFSISKWTDGKPQKPTIRSDTPEE 273
            MASNAAVPFWRAAGMTYI+YSN+CAN+VRNCLKEPY+ EAL+REKVHFS SKW DGKPQKP IRSDT EE
Sbjct:    1 MASNAAVPFWRAAGMTYITYSNLCANMVRNCLKEPYRAEALSREKVHFSFSKWVDGKPQKPAIRSDTGEE 70
[Close]
BLAST of CK934498 vs. ExPASy Swiss-Prot
Match: ATP5E_MAIZE (ATP synthase subunit epsilon, mitochondrial OS=Zea mays PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.076e-26
Identity = 52/68 (76.47%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:   67 ASNAAVPFWRAAGMTYISYSNICANLVRNCLKEPYKTEALTREKVHFSISKWTDGKPQKPTIRSDTPE 270
            A+ AAVPFWRAAGMTYI YSNICA LVRNCLKEP+K+EA +REKVHFSISKWTDGK +KPT+R+++ +
Sbjct:    3 ATTAAVPFWRAAGMTYIGYSNICAALVRNCLKEPFKSEAASREKVHFSISKWTDGKQEKPTVRTESDD 70
The following BLAST results are available for this feature:
BLAST of CK934498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ATP5E_ARATH4.970e-3289.86ATP synthase subunit epsilon, mitochondrial OS=Ara... [more]
ATP5E_IPOBA9.374e-3185.71ATP synthase subunit epsilon, mitochondrial OS=Ipo... [more]
ATP5E_MAIZE4.076e-2676.47ATP synthase subunit epsilon, mitochondrial OS=Zea... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004258_D06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934498 ID=CK934498; Name=CK934498; organism=Citrus sinensis; type=EST; length=600bp
GGGGGCTGGCTGAGGGCAACCCACAAAGACAGAGCAAGAGAGAAAGAAGA
AAGAAAAAAGCAAATGGCGTCAAACGCAGCGGTGCCGTTTTGGAGAGCAG
CGGGGATGACATACATATCGTACTCGAACATCTGTGCGAATCTGGTGAGG
AATTGTCTCAAGGAACCTTACAAAACCGAGGCCCTCACTCGCGAGAAGGT
TCACTTCTCTATCTCTAAGTGGACCGATGGCAAACCCCAGAAACCCACTA
TTCGTTCTGATACTCCGGAAGAATGAGTCCAATGGTAAATTGGTGTCCAA
ATGTCAGTGACTCAGTGTGGAGTGGAACAATGTGTGCGGCAAAGCTTTTT
TCTGTTTCATTATTTGGTAGATTTAATCTTATTGGGTCAGTAATGCATAA
AACTCTCGAACAACATTTGCATTTCTGTTTCTGCATGGCAAATGCATTTG
TAATAATGTAACTGGCATTGACCTACTTTGGAAACTAGACTTGTGTTTGT
TTGTTCTTCATAGAAATTGATGGATATATATTTTCCAAGTAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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