CK935028

Overview
NameCK935028
Unique NameCK935028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935028_ssr402 microsatellite CK935028_ssr402:402..421. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8042 contig Csv1_Contig8042:1..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.373e-58
Identity = 83/141 (58.87%), Postives = 98/141 (69.50%), Query Frame = 3
Query:  438 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMKKEYDKLSQNIEHAAKRSSLFDLTGGMTVFXXTE 860
            R+ ELPPVDMFVTTAD   EPP+I VNTVLSLLAV+YP +KLACYVSDD CSPL ++SL EASKFAK+WVPFCKKYNV++RAPF YF              +DW+  K+EY+KLSQ +E A   S   D       F  T+
Sbjct:   88 RVHELPPVDMFVTTADPVREPPLIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNVRVRAPFMYF-RNSPEAAEGSEFSKDWEMTKREYEKLSQKVEDATGSSHWLDAEDDFEAFLNTK 227          

HSP 2 Score: 78.9518 bits (193), Expect = 1.373e-58
Identity = 36/88 (40.91%), Postives = 47/88 (53.41%), Query Frame = 1
Query:   64 MANTKSSCLPLYEKVFHKNTYHRAXXXXXXXXXXXXXXXXXXXXKNHGFAWFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 327
            MA + S   PL E++ HK+ + RA                          W +AFLCE+CFTF+W+LI N KW+P  YKTYP+RL ER
Sbjct:    1 MAESSSPLPPLCERISHKSYFLRAVDLTILGLLLSLLLYRILHVNQKDTVWIVAFLCETCFTFVWLLITNIKWSPADYKTYPERLDER 88          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.132e-54
Identity = 78/141 (55.32%), Postives = 97/141 (68.79%), Query Frame = 3
Query:  438 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMKKEYDKLSQNIEHAAKRSSLFDLTGGMTVFXXTE 860
            R+ +LP VDMFVTTAD   EPPI+  NT+LSLLAV+YP +KLACYVSDD CSPL ++SL EASKFAK+WVPFCKKYN+++RAPFRYF              +DW+  K+EY+KLS+ +E A   S   D       F  T+
Sbjct:   88 RVHDLPSVDMFVTTADPVREPPILVANTLLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNIKVRAPFRYF-LNPPAATESSEFSKDWEITKREYEKLSRRVEDATGDSHWLDAEDDFEDFSNTK 227          

HSP 2 Score: 74.3294 bits (181), Expect = 1.132e-54
Identity = 35/88 (39.77%), Postives = 49/88 (55.68%), Query Frame = 1
Query:   64 MANTKSSCLPLYEKVFHKNTYHRAXXXXXXXXXXXXXXXXXXXXKNHGFAWFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 327
            MA++ SS  PL EK+ +KN + R                       +   W +AFLCES F+FIW+LI + KW+P +YK+YP+RL ER
Sbjct:    1 MADSSSSLPPLCEKISYKNYFLRVVDLTILGFLFSLLLYRILLMNQNNSVWVVAFLCESFFSFIWLLITSIKWSPASYKSYPERLDER 88          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLB2_ARATH (Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 7.871e-53
Identity = 78/141 (55.32%), Postives = 97/141 (68.79%), Query Frame = 3
Query:  438 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMKKEYDKLSQNIEHAAKRSSLFDLTGGMTVFXXTE 860
            R+ +LP VDMFV TAD   EPPI+ VNTVLSLLAV+YP +KLACYVSDD CSPL ++SL EASKFAK+WVPFCKKYN+++RAPFRYF              +DW+  K+EY+KL + +E A   S L      +  F  T+
Sbjct:   88 RVYDLPSVDMFVPTADPVREPPIMVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNLKVRAPFRYF-LNPFAATEGSEFSRDWEMTKREYEKLCRKVEDATGDSHLLGTDNELEAFSNTK 227          

HSP 2 Score: 69.3218 bits (168), Expect = 7.871e-53
Identity = 33/88 (37.50%), Postives = 44/88 (50.00%), Query Frame = 1
Query:   64 MANTKSSCLPLYEKVFHKNTYHRAXXXXXXXXXXXXXXXXXXXXKNHGFAWFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 327
            MA++  S  PLYE + +K+   RA                      +G  W +AFLCESCF+F+W+L    KW+P   K YP RL ER
Sbjct:    1 MADSSCSLPPLYENISYKSYILRAVDLTILGLLFSLLLHRILYMSQNGIIWLVAFLCESCFSFVWLLSTCTKWSPAETKPYPDRLDER 88          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLB6_ARATH (Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 1.026e-52
Identity = 80/141 (56.74%), Postives = 94/141 (66.67%), Query Frame = 3
Query:  438 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMKKEYDKLSQNIEHAAKRSSLFDLTGGMTVFXXTE 860
            R+ +LP VDMFV TAD   EPPII VNTVLSLLAV+YP +KLACYVSDD CSPL ++SL EASKF K+W PFCKKYNV++RAPFRYF              +DWK MK+EY KL + +E A   S   D       F  T+
Sbjct:   88 RVHDLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFVKIWAPFCKKYNVRVRAPFRYF-LNPLVATDDSVFSKDWKMMKREYVKLCRKVEDATGDSHWLDADDDFEAFSNTK 227          

HSP 2 Score: 67.781 bits (164), Expect = 1.026e-52
Identity = 33/88 (37.50%), Postives = 45/88 (51.14%), Query Frame = 1
Query:   64 MANTKSSCLPLYEKVFHKNTYHRAXXXXXXXXXXXXXXXXXXXXKNHGFAWFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 327
            MA++ SS LPL E++ HK+   R                       +   W +AFLCESCF+F+W++I   KW+P   K YP RL ER
Sbjct:    1 MADSSSSLLPLCERISHKSYILRIVDLTILVLLFSLLWYRILHMCENNTIWLVAFLCESCFSFMWLIITCIKWSPAEDKPYPNRLDER 88          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLB1_ARATH (Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 3.795e-49
Identity = 76/141 (53.90%), Postives = 96/141 (68.09%), Query Frame = 3
Query:  438 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMKKEYDKLSQNIEHAAKRSSLFDLTGGMTVFXXTE 860
            R+ +LP VDMFV TAD   EPPI+ V+TVLSLLAV+YP +KLACYVSDD CSPL ++SL EASKFAK+WVPFCKKYN ++RAP RYF              +DW+  K+EY+KL + +E A   S + D+      F  T+
Sbjct:   88 RVHDLPSVDMFVPTADPVREPPIMVVDTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNTRVRAPSRYFLKPISVATEDYEFNRDWEKTKREYEKLRRKVEDATGDSHMLDVEDDFEAFSNTK 228          

HSP 2 Score: 55.0694 bits (131), Expect = 3.795e-49
Identity = 28/88 (31.82%), Postives = 40/88 (45.45%), Query Frame = 1
Query:   64 MANTKSSCLPLYEKVFHKNTYHRAXXXXXXXXXXXXXXXXXXXXKNHGFAWFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 327
            MA++  S  PL E++ + N + RA                      +   W +AF CESCF  + +LI   KW+P   K +P RL ER
Sbjct:    1 MADSSFSLPPLCERISYTNYFLRAVYLTVLGLFFSLLLHRIRHTSEYDNVWLVAFFCESCFFLVCLLITCLKWSPADTKPFPDRLDER 88          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.375e-45
Identity = 80/144 (55.56%), Postives = 94/144 (65.28%), Query Frame = 3
Query:  438 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPV--HKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMKKEYDKLSQNIEHAAKRSSLFDLTGGMTVFXXTER 863
            RI ELP VDMFVTTAD  LEPP++TVNTVLSLLA+DYP    KLACYVSDD CSPL  Y+L EA++FA+ WVPFC+++ V +RAPFRYF              +DW  MK EY+KL   IE A + S L    G    F   ER
Sbjct:   87 RIDELPAVDMFVTTADPVLEPPLVTVNTVLSLLALDYPAAGEKLACYVSDDGCSPLTCYALREAARFARTWVPFCRRHGVAVRAPFRYFSSTPEFGPADGKFLEDWTFMKSEYEKLVHRIEDADEPSLLRHGGGEFAEFLDVER 230          

HSP 2 Score: 48.521 bits (114), Expect = 2.375e-45
Identity = 18/35 (51.43%), Postives = 26/35 (74.29%), Query Frame = 1
Query:  223 AFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 327
            A  CE+ FTF+W+L VN KW+P+ + T+P+ L ER
Sbjct:   53 ALACEAWFTFMWLLNVNAKWSPVRFDTFPENLAER 87          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLB5_ARATH (Cellulose synthase-like protein B5 OS=Arabidopsis thaliana GN=CSLB5 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.355e-38
Identity = 85/176 (48.30%), Postives = 106/176 (60.23%), Query Frame = 3
Query:  345 LALIISASFAIVFVILQVXXXXXXXXCVRLN----RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMKKEYDKLSQNIEHAAKRSSLFDLTGGMTVFXXTE 860
            LA    + F++V++I              +N    R+ +LP +DMFV TAD   E PIITVNTVLSLLAV+YP +KLACYVSDD CSPL ++SL EASKF K+W PFCKKYNV++RAPFRYF              +DWK MK+EY KL + +E A   S   D       F  T+
Sbjct:   53 LAFFCESCFSLVWLIFTCLKWSPAEDIPYINTLNERVHDLPSLDMFVPTADTVRESPIITVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFVKIWAPFCKKYNVRVRAPFRYF-LNPLVATDDSVFSKDWKMMKREYVKLCRKVEDATGDSHWLDADDDFEAFSNTK 227          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 4.222e-32
Identity = 72/129 (55.81%), Postives = 87/129 (67.44%), Query Frame = 3
Query:  447 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPV--HKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQ---DWKNMKKEYDKLSQNIEHAAKRSSL 818
            ELP VDM VTTAD  LEPP++TVNTVLSLLA+DYP    +LACYVSDD CSPL  ++L EA+ FA  WVPFC++Y V +RAPFRYF              +   DW  MK EYDKL + I++  +RS L
Sbjct:  133 ELPAVDMLVTTADPALEPPLVTVNTVLSLLALDYPRAGERLACYVSDDGCSPLTCHALREAAGFAAAWVPFCRRYGVAVRAPFRYFSSSSSPESGGPADRKFLDDWTFMKDEYDKLVRRIKNTDERSLL 261          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.222e-32
Identity = 72/129 (55.81%), Postives = 87/129 (67.44%), Query Frame = 3
Query:  447 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPV--HKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQ---DWKNMKKEYDKLSQNIEHAAKRSSL 818
            ELP VDM VTTAD  LEPP++TVNTVLSLLA+DYP    +LACYVSDD CSPL  ++L EA+ FA  WVPFC++Y V +RAPFRYF              +   DW  MK EYDKL + I++  +RS L
Sbjct:  133 ELPAVDMLVTTADPALEPPLVTVNTVLSLLALDYPRAGERLACYVSDDGCSPLTCHALREAAGFAAAWVPFCRRYGVAVRAPFRYFSSSSSPESGGPADRKFLDDWTFMKDEYDKLVRRIKNTDERSLL 261          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.012e-30
Identity = 61/117 (52.14%), Postives = 78/117 (66.67%), Query Frame = 3
Query:  447 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF--XXXXXXXXXXXXXXQDWKNMKKEYDKLSQNI 791
            +L PVD+FV+T D   EPPIIT NT+LS+LAVDYPV+K++CYVSDD  S L F +L E S+FA+ WVPFCKKYNV+ RAP  YF                +D + MK+EY++    I
Sbjct:  290 KLAPVDVFVSTVDPLKEPPIITANTILSILAVDYPVNKVSCYVSDDGASMLLFDTLSETSEFARRWVPFCKKYNVEPRAPEFYFSEKIDYLKDKVQTTFVKDRRAMKREYEEFKVRI 406          

HSP 2 Score: 35.4242 bits (80), Expect = 2.012e-30
Identity = 15/38 (39.47%), Postives = 20/38 (52.63%), Query Frame = 1
Query:  214 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 327
            W ++ +CE  F   WIL    KW P+  +TY  RL  R
Sbjct:  244 WLISVICEIWFALSWILDQFPKWFPINRETYLDRLSMR 281          
The following BLAST results are available for this feature:
BLAST of CK935028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLB4_ARATH1.373e-5858.87Cellulose synthase-like protein B4 OS=Arabidopsis ... [more]
CSLB3_ARATH1.132e-5455.32Cellulose synthase-like protein B3 OS=Arabidopsis ... [more]
CSLB2_ARATH7.871e-5355.32Cellulose synthase-like protein B2 OS=Arabidopsis ... [more]
CSLB6_ARATH1.026e-5256.74Cellulose synthase-like protein B6 OS=Arabidopsis ... [more]
CSLB1_ARATH3.795e-4953.90Cellulose synthase-like protein B1 OS=Arabidopsis ... [more]
CSLH1_ORYSJ2.375e-4555.56Cellulose synthase-like protein H1 OS=Oryza sativa... [more]
CSLB5_ARATH1.355e-3848.30Cellulose synthase-like protein B5 OS=Arabidopsis ... [more]
CSLH2_ORYSJ4.222e-3255.81Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLH2_ORYSI4.222e-3255.81Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CESA4_ARATH2.012e-3052.14Cellulose synthase A catalytic subunit 4 [UDP-form... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004222_H04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935028 ID=CK935028; Name=CK935028; organism=Citrus sinensis; type=EST; length=868bp
GGGGACATCTATTAATGCCGAAACACCAAAAATAAAAAAAACGAGTACTT
GTTTTTCAAGCTCATGGCCAATACAAAGTCGTCATGTCTCCCTCTATACG
AAAAAGTTTTTCATAAAAACACATATCATAGGGCTTTAGATGTTATCATC
TTGTTCCTTCTTCTATGTCTGCTCTTCTATCGGCTCTCAACGTTGAAGAA
TCATGGATTTGCTTGGTTTCTTGCTTTTCTATGTGAGTCTTGTTTTACTT
TCATCTGGATTCTCATCGTCAACTGCAAGTGGACTCCTTTGACCTACAAA
ACATATCCCCAACGTCTCCAAGAAAGGTAACAAATCAAATAACGTTAGCA
TTAATAATTTCCGCATCATTTGCAATTGTCTTTGTCATTTTGCAAGTTAC
TACACACACACACACACACACATGTGTACGACTCAACAGGATACAGGAGC
TGCCCCCAGTGGACATGTTTGTGACAACTGCTGATGCTGAACTCGAGCCG
CCAATCATCACTGTAAACACAGTGCTGTCTTTGTTGGCAGTTGATTATCC
AGTTCACAAGCTCGCTTGCTATGTTTCTGATGATGCCTGCTCACCTCTCA
ATTTCTACTCTCTTGTTGAAGCTTCTAAATTCGCTAAGCTTTGGGTTCCA
TTCTGTAAAAAGTATAATGTTCAAATTAGAGCTCCCTTTAGATACTTCCC
AGATAGTGAGCCGTCCGATTCCAGTTCAGGGGAACTCCTGCAAGACTGGA
AAAACATGAAGAAAGAGTATGATAAACTTAGCCAAAACATAGAACATGCA
GCCAAAAGATCTTCTTTATTTGATCTAACAGGAGGAATGACTGTTTTCTN
NNATACAGAACGCATGAA
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