GE213179

Overview
NameGE213179
Unique NameGE213179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2797 contig Csv1_Contig2797:227..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213179 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 7.335e-43
Identity = 81/105 (77.14%), Postives = 89/105 (84.76%), Query Frame = -2
Query:    7 YTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYLGRDH 321
            YTEF GNF S+A QCLQKLP+SNNKFTYNCD HTFNYL DNG+TYCVV  ES+GRQIPMAFLERVK++F  +YGGGKA+TA AN LNKEFG KLKE MQY   DH
Sbjct:   21 YTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCA-DH 124          
BLAST of GE213179 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 1.634e-42
Identity = 79/100 (79.00%), Postives = 89/100 (89.00%), Query Frame = -2
Query:   22 YTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQY 321
            +T+F GNF SIA QCLQKLP+SNNKFTYNCD HTFNYLV+NG+TYCVVA +S+GRQIPMAFLERVK++F  +YGGGKAATA AN LNKEFG KLKE MQY
Sbjct:   21 FTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQY 120          
BLAST of GE213179 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 4.755e-42
Identity = 78/100 (78.00%), Postives = 87/100 (87.00%), Query Frame = -2
Query:   22 YTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQY 321
            YTEF GNF ++A QCLQKLP+SNNKFTYNCD HTFNYLV+NG+TYCVVA ES GRQIPMAFLERVK++F  +YGGGKA TA AN LN+EFG KLKE MQY
Sbjct:   86 YTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQY 185          
BLAST of GE213179 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.383e-41
Identity = 77/100 (77.00%), Postives = 89/100 (89.00%), Query Frame = -2
Query:   22 YTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQY 321
            +T+F GNF SIA QCLQKLP+SNNKFTYNCD HTFNYLV++G+TYCVVA +S+GRQIPM+FLERVK++F  +YGGGKAATA AN LNKEFG KLKE MQY
Sbjct:   21 FTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQY 120          
BLAST of GE213179 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.026e-36
Identity = 70/100 (70.00%), Postives = 83/100 (83.00%), Query Frame = -2
Query:   22 YTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQY 321
            +T+F GNF S+A Q L+ LP+SNNKFTYNCD HTFN LV+NG+TYCVVA +S+GR+IPMAFLERVK++F  +YGG KAAT  AN LNKEFG  LKE MQY
Sbjct:   21 FTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQY 120          
BLAST of GE213179 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.481e-35
Identity = 73/107 (68.22%), Postives = 87/107 (81.31%), Query Frame = -2
Query:    4 YTEFSGNFNSIAYQCLQKLPASNN-KFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYLGRDHA 321
            YTEF+GNF SIA QCLQKLP+S+N KFTYNCD HTFN+LV++GY YCVVA +S  +QI +AFLERVK +F  +YGGGKA+TA A  LNKEFGP +KE M Y+  DHA
Sbjct:   21 YTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYI-VDHA 126          
BLAST of GE213179 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.777e-26
Identity = 57/119 (47.90%), Postives = 77/119 (64.71%), Query Frame = -2
Query:   22 YTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGG-------------------KAATAPANGLNKEFGPKLKELMQY 321
            +T +SGNF++IA QCLQKLP +++K+TY+CD HTFN+LVDNG+ + VVADES+GR +P  FLERVK++F  +Y                          + A  L++EFGP LKE MQY
Sbjct:   21 HTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFSVAYNLDREFGPILKEHMQY 139          
BLAST of GE213179 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.211e-14
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = -2
Query:   22 YTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQY 321
            +T  +GNF +I  + L  +P ++ K +Y  + + F+YLV +  TY  +ADE  GR+IP  FL+ VK+ F S Y G K  TA A G+N +F   L+ LM +
Sbjct:   18 FTSTNGNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTYLCMADEEFGRRIPFTFLDDVKNRFKSMY-GDKGKTAIAYGMNSDFSRTLENLMDH 116          
BLAST of GE213179 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.404e-11
Identity = 38/105 (36.19%), Postives = 59/105 (56.19%), Query Frame = -2
Query:   10 YTEFSGNFNSIAYQCLQKLPASNNK-FTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYLGRD 321
            +T  S N ++IA Q L+K+P  N+   +Y+ D + F+    +G T   +A+E++GR+IP AFLE +   FV  YG     TA A  +N+EF   L + + Y   D
Sbjct:   18 FTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGLTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRA-VHTALAYAMNEEFSRVLSQQIDYYSND 121          
The following BLAST results are available for this feature:
BLAST of GE213179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
VA726_ARATH7.335e-4377.14Putative vesicle-associated membrane protein 726 O... [more]
VA722_ARATH1.634e-4279.00Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA725_ARATH4.755e-4278.00Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA721_ARATH1.383e-4177.00Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA723_ARATH1.026e-3670.00Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA724_ARATH1.481e-3568.22Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA727_ARATH4.777e-2647.90Vesicle-associated membrane protein 727 OS=Arabido... [more]
VAM7B_DICDI3.211e-1440.00Vesicle-associated membrane protein 7B OS=Dictyost... [more]
VA711_ARATH7.404e-1136.19Vesicle-associated membrane protein 711 OS=Arabido... [more]
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Properties
Property NameValue
Genbank description20 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213179 ID=GE213179; Name=GE213179; organism=Citrus sinensis; type=EST; length=343bp
ATTAGCGTGGTCGCGGCCGAGGTACTGCATAAGTTCTTTCAATTTTGGTC
CAAATTCCTTGTTCAGGCCATTGGCAGGAGCCGTGGCAGCCTTTCCACCC
CCATATTTGGAAACAAATTCATCCTTGACGCGCTCCAGAAAAGCCATCGG
TATTTGTCTTCCGGACGATTCATCTGCGACCACACAATATGTGTAACCAT
TATCGACGAGATAATTGAAGGTGTGAGCATCACAGTTGTAAGTGAACTTG
TTGTTGGAAGCAGGGAGTTTCTGGAGGCACTGATAGGCTATGGAGTTGAA
ATTGCCACTGAACTCAGTGTACCTGCCCGGGCGGCCGCTCGAA
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