EY735846

Overview
NameEY735846
Unique NameEY735846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735846 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 1.415e-80
Identity = 145/212 (68.40%), Postives = 165/212 (77.83%), Query Frame = 2
Query:  131 SRFFGTRIHGAVVKQRSGKFQARXXXXXXXXXXXXXXRPTR----DSDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGXVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIXYQRNAEPDPRKNNTP 754
            S  FG RI     +  +G+ QAR              + +R    D DRLVWFPGA PPEWLDG+M+GDRGFDP GLGKP EYLQYDFD LDQNLAKN  G+++G+I +S E++PTP QPYTEVFG+QRFRECELIHGRWAMLGTLGAIAVEALTG+AWQDAG VELVEGSSYLGQPLPFSLTTLIWIEV+V+GYI +QRN+E DP K   P
Sbjct:   10 SGIFGIRIQDP--RPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYP 219          
BLAST of EY735846 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 7.282e-69
Identity = 126/208 (60.58%), Postives = 153/208 (73.56%), Query Frame = 2
Query:  131 SRFFGTRIHGAVVKQRSGKFQARXXXXXXXXXXXXXXRPTRDSDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGXVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIXYQRNAEPDPRKNNTP 754
            S   GTR+   +    SG+F A               + T  +DR +W+PGA  P+WLDG++VGD GFDP GLGKP EYLQ+D DSLDQNLAKN  G+++G  T++ + + TP QPY+EVFG+QRFRECELIHGRWAML TLGA++VE LTGV WQDAG VELV+GSSYLGQPLPFS++TLIWIEV+VIGYI +QRNAE D  K   P
Sbjct:   12 SSIMGTRVAPGI-HPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYP 218          
BLAST of EY735846 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.373e-67
Identity = 122/166 (73.49%), Postives = 139/166 (83.73%), Query Frame = 2
Query:  257 SDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGXVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIXYQRNAEPDPRKNNTP 754
            SDR +WFPGA  PE+LDG++VGD GFDP GLGKP EYLQ+D DSLDQNLAKN  GE++G  T++ + + TP QPY+EVFGLQRFRECELIHGRWAML TLGAI VE LTGV WQDAG VELV+GSSYLGQPLPFS++TLIWIEV+VIGYI +QRNAE D  K   P
Sbjct:   50 SDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYP 215          
BLAST of EY735846 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 186.037 bits (471), Expect = 2.279e-46
Identity = 91/164 (55.49%), Postives = 113/164 (68.90%), Query Frame = 2
Query:  269 VWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVI--TDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGXVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIXYQRNAEPDPRKNNTP 754
            +W P  T PEWLDG++ GDRGFDPLGL KP+E++    D  DQN AKN+ G +  ++  T         L PY+EVFGL RFRECELIHGRWAML  LGA+  EA TGV+W +AG VEL +G+SY G  LPFS+T LIWIEVI++G   + RN+E +P K   P
Sbjct:   52 LWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYP 214          
BLAST of EY735846 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.544e-13
Identity = 46/142 (32.39%), Postives = 65/142 (45.77%), Query Frame = 2
Query:  293 PEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGXVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIXYQR 718
            PEWLDG++ GD GFDPLGLGK   +L++                                           +RE ELIHGRWAML  LG    +A TG+ W +AG        +  G   PFS  TL+  +++++G++  +R
Sbjct:   73 PEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAG--------ADPGAVAPFSFGTLLGTQLLLMGWVESKR 163          
BLAST of EY735846 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.649e-12
Identity = 45/142 (31.69%), Postives = 64/142 (45.07%), Query Frame = 2
Query:  293 PEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGXVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIXYQR 718
            PEWLDG++ GD GFDPLGLGK   +L++                                           +RE ELIHGRWAM   LG    +A +G+ W +AG        +  G   PFS  TL+  ++I++G++  +R
Sbjct:   68 PEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGTLLGTQLILMGWVESKR 158          
BLAST of EY735846 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.069e-11
Identity = 43/142 (30.28%), Postives = 64/142 (45.07%), Query Frame = 2
Query:  293 PEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGXVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIXYQR 718
            PEWLDG++ GD GFDPLGLGK   +L++                                           +RE ELIHGRWAM   LG    +A +G+ W +AG        +  G   PFS  +L+  +++++G++  +R
Sbjct:   68 PEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKR 158          
The following BLAST results are available for this feature:
BLAST of EY735846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CB4C_ARATH1.415e-8068.40Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB4A_ARATH7.282e-6960.58Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH1.373e-6773.49Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB29_CHLRE2.279e-4655.49Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB4_SPIOL2.544e-1332.39Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4A_SOLLC1.649e-1231.69Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC1.069e-1130.28Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-005-H02-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735846 ID=EY735846; Name=EY735846; organism=Citrus sinensis; type=EST; length=859bp
CCACGCGTCCGGAAAGAACCCCACAAAATAAAATTCCTTAACGCTCTATA
TTTATTTATACACTGGGAAGTCACATATTCTATCCAATATCAAATTATCA
GCGATGGCCACCACCACTACAGCAGCAGCATCACGTTTCTTCGGGACGAG
AATTCACGGGGCTGTCGTGAAACAAAGATCGGGAAAATTCCAAGCCAGGT
TCAGCTTTGGCAAGAAAAAATCCCCACCAGCCAAAAAGGCCAGGCCTACA
CGAGACTCCGACCGGCTTGTCTGGTTCCCCGGCGCCACCCCGCCGGAATG
GCTCGACGGGACAATGGTGGGTGACCGTGGGTTCGACCCGTTGGGGCTGG
GGAAGCCAACAGAGTACTTGCAGTATGATTTTGACTCGTTGGATCAGAAC
TTGGCCAAGAACGATGTCGGCGAGCTTCTCGGAGTGATTACTGATTCCGG
GGAGCTGCAGCCGACGCCGCTGCAGCCGTACACGGAGGTATTTGGGCTGC
AGAGGTTTAGAGAATGTGAGCTGATTCATGGAAGGTGGGCCATGTTGGGT
ACCCTTGGCGCCATTGCTGTTGAAGCTCTCACTGGTGTCGCATGGCAGGA
TGCTGGANAGGTGGAGCTGGTGGAGGGTTCATCTTATCTTGGCCAACCAC
TTCCATTTTCATTAACCACATTGATTTGGATTGAAGTTATTGTGATTGGG
TACATANAATATCAAAGAAATGCAGAACCTGATCCACGGAAAAACAATAC
CCCGGTGGGGGTTTGGAGCTCTGGGGGTGGCGGCCATCATGCGAGCGAAA
GCGTCACAACTGGCTGTGGGTGGGACGCACCCCGCGCCGCGTGCCAGGGT
AGGCTCTGA
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