EY735836

Overview
NameEY735836
Unique NameEY735836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735836 vs. ExPASy Swiss-Prot
Match: PR19B_ARATH (Pre-mRNA-processing factor 19 homolog 2 OS=Arabidopsis thaliana GN=PRP19B PE=1 SV=3)

HSP 1 Score: 335.88 bits (860), Expect = 4.804e-95
Identity = 163/222 (73.42%), Postives = 188/222 (84.68%), Query Frame = 2
Query:   14 EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVATVTADWNCIKTFPDLSGTGKATCVKFG 679
            + DL LT SADKTVR+W+   DGNY C +TL DH+AEV+AVTVH TNKYFV+ASLD TWCFYDLSSG CL QVSD   D +   YT+AAFHPDGLILGTGTS+++VKIWDVKSQANVAKFDGH G VTAISFSENGY+LATAA DGV+LWDLRKL+NF+SF S+D+    NSV+FD SGSYL +A++DI+VYQ A+V A+WN IKT PDLSGTGKATCVKFG
Sbjct:  275 DSDLVLTASADKTVRIWRNPGDGNYACGYTLNDHSAEVRAVTVHPTNKYFVSASLDGTWCFYDLSSGSCLAQVSD---DSKNVDYTAAAFHPDGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAEDGVRLWDLRKLRNFKSFLSADA----NSVEFDPSGSYLGIAASDIKVYQTASVKAEWNLIKTLPDLSGTGKATCVKFG 489          

HSP 2 Score: 32.7278 bits (73), Expect = 4.804e-95
Identity = 14/22 (63.64%), Postives = 17/22 (77.27%), Query Frame = 3
Query:  678 GPHRYYLAVGSMDRHLLVFGLP 743
            G    Y+AVGSMDR+L +FGLP
Sbjct:  489 GSDAQYVAVGSMDRNLRIFGLP 510          
BLAST of EY735836 vs. ExPASy Swiss-Prot
Match: PR19A_ARATH (Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana GN=PRP19A PE=1 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 6.859e-94
Identity = 161/220 (73.18%), Postives = 190/220 (86.36%), Query Frame = 2
Query:   20 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVATVTADWNCIKTFPDLSGTGKATCVKFG 679
            DL LT S+DKTVR+W  SEDGNY  +HTLKDH+AEV+AVTVHATNKYFV+ASLD+TWCFYDLSSG+CL QV+DA  +     YT+AAFHPDGLILGTGT++++VKIWDVKSQANVAKF GH G +T+ISFSENGY+LATAA DGV+LWDLRKLKNFR+F+  D+    NSV+FDHSGSYL +A++DIRV+Q A+V A+WN IKT PDLSGTGKAT VKFG
Sbjct:  277 DLVLTASSDKTVRIWGCSEDGNYTSRHTLKDHSAEVRAVTVHATNKYFVSASLDSTWCFYDLSSGLCLAQVTDASEND--VNYTAAAFHPDGLILGTGTAQSIVKIWDVKSQANVAKFGGHNGEITSISFSENGYFLATAALDGVRLWDLRKLKNFRTFDFPDA----NSVEFDHSGSYLGIAASDIRVFQAASVKAEWNPIKTLPDLSGTGKATSVKFG 490          

HSP 2 Score: 32.3426 bits (72), Expect = 6.859e-94
Identity = 13/17 (76.47%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  693 YLAVGSMDRHLLVFGLP 743
            Y+AVGSMDR+L +FGLP
Sbjct:  495 YIAVGSMDRNLRIFGLP 511          
BLAST of EY735836 vs. ExPASy Swiss-Prot
Match: PRP19_HUMAN (Pre-mRNA-processing factor 19 OS=Homo sapiens GN=PRPF19 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.639e-44
Identity = 99/221 (44.80%), Postives = 135/221 (61.09%), Query Frame = 2
Query:   20 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVATVTADWNCIKTFPDLSGTGKATCVKFG 679
            DL  + S D T+R+W      N  C   ++ H + V  +++HAT  Y +++S D  W F D+ +G  LT+V+D  T G     T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D  VKLWDLRKLKNF++ +  D+     S+ FD SG+YLA+   D+++Y    +   W  I  F + SG    T V FG
Sbjct:  277 DLVFSASPDATIRIWSVP---NASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDE-TSGC--SLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWTEILHFTEHSGL--TTGVAFG 484          
BLAST of EY735836 vs. ExPASy Swiss-Prot
Match: PRP19_CHICK (Pre-mRNA-processing factor 19 OS=Gallus gallus GN=PRPF19 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.639e-44
Identity = 97/221 (43.89%), Postives = 133/221 (60.18%), Query Frame = 2
Query:   20 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVATVTADWNCIKTFPDLSGTGKATCVKFG 679
            DL  + S D T+R+W      N  C   ++ H   V  +++HAT  Y +++S D  W F D+ +G  LT+V+D  +       T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D  VKLWDLRKLKNF++ +  D+     S+ FD SG+YLA+   D+++Y    +   W  I  F + SG    T V FG
Sbjct:  278 DLVFSASPDATIRIWSVP---NASCVQVVRAHEGSVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDESSGC---ALTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWTEILHFTEHSGL--TTGVAFG 485          
BLAST of EY735836 vs. ExPASy Swiss-Prot
Match: PRP19_RAT (Pre-mRNA-processing factor 19 OS=Rattus norvegicus GN=Prpf19 PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 1.059e-43
Identity = 98/221 (44.34%), Postives = 135/221 (61.09%), Query Frame = 2
Query:   20 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVATVTADWNCIKTFPDLSGTGKATCVKFG 679
            +L  + S D T+R+W      N  C   ++ H + V  +++HAT  Y +++S D  W F D+ +G  LT+V+D  T G     T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D  VKLWDLRKLKNF++ +  D+     S+ FD SG+YLA+   D+++Y    +   W  I  F + SG    T V FG
Sbjct:  277 ELVFSASPDATIRIWSVP---NTSCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDE-TSGC--SLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWTEILHFTEHSGL--TTGVAFG 484          
BLAST of EY735836 vs. ExPASy Swiss-Prot
Match: PRP19_MOUSE (Pre-mRNA-processing factor 19 OS=Mus musculus GN=Prpf19 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.059e-43
Identity = 98/221 (44.34%), Postives = 135/221 (61.09%), Query Frame = 2
Query:   20 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVATVTADWNCIKTFPDLSGTGKATCVKFG 679
            +L  + S D T+R+W      N  C   ++ H + V  +++HAT  Y +++S D  W F D+ +G  LT+V+D  T G     T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D  VKLWDLRKLKNF++ +  D+     S+ FD SG+YLA+   D+++Y    +   W  I  F + SG    T V FG
Sbjct:  277 ELVFSASPDATIRIWSVP---NTSCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDE-TSGC--SLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWTEILHFTEHSGL--TTGVAFG 484          
BLAST of EY735836 vs. ExPASy Swiss-Prot
Match: PRP19_BOVIN (Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRPF19 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.059e-43
Identity = 98/221 (44.34%), Postives = 135/221 (61.09%), Query Frame = 2
Query:   20 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVATVTADWNCIKTFPDLSGTGKATCVKFG 679
            +L  + S D T+R+W      N  C   ++ H + V  +++HAT  Y +++S D  W F D+ +G  LT+V+D  T G     T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D  VKLWDLRKLKNF++ +  D+     S+ FD SG+YLA+   D+++Y    +   W  I  F + SG    T V FG
Sbjct:  277 ELVFSASPDATIRIWSVP---NASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDE-TSGC--SLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWTEILHFTEHSGL--TTGVAFG 484          
BLAST of EY735836 vs. ExPASy Swiss-Prot
Match: PRP19_CAEEL (Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans GN=T10F2.4 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.582e-39
Identity = 94/227 (41.41%), Postives = 138/227 (60.79%), Query Frame = 2
Query:   29 LTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVATVTADWNCIKTFPDLSGTGKATCVKFG--PPSLLPC 700
            ++ SAD  +RVW  ++  +   K  +  H A V  ++++A+  Y ++AS D+ W F D+ SG  L +VS     G      S  FHPDGLI GTG ++A+VKIWD+K+Q   A F GH  AV +I+FSENGYYLAT + DG VKLWDLRKLKN ++F +++ + P NS+ FD +G++L +    ++V  V +    W+ + +  D S  G  T V+FG    SL+ C
Sbjct:  267 ISASADSHIRVWSATDSSS---KAIIDVHQAPVTDISLNASGDYILSASDDSYWAFSDIRSGKSLCKVSVE--PGSQIAVHSIEFHPDGLIFGTGAADAVVKIWDLKNQTVAAAFPGHTAAVRSIAFSENGYYLATGSEDGEVKLWDLRKLKNLKTF-ANEEKQPINSLSFDMTGTFLGIGGQKVQVLHVKS----WSEVVSLSDHS--GPVTGVRFGENARSLVTC 481          
BLAST of EY735836 vs. ExPASy Swiss-Prot
Match: PRP19_DICDI (Pre-mRNA-processing factor 19 homolog OS=Dictyostelium discoideum GN=prp19 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.956e-26
Identity = 73/200 (36.50%), Postives = 106/200 (53.00%), Query Frame = 2
Query:   11 AEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD-----HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPT------NSVDFDHSGSYLAVASAD 577
            A  +  ++  +D  +RV +G E  +       K      H A V  +++H    Y +++SLD +   YD+ +G  LT    +    +   YTS AFHPDG+    GT   +VKI+D+KS+ N   F G   AV  ISFSENGYYL  A ++ VKL+DLRK     +  S D +T T       S++FD+S  YL VAS++
Sbjct:  269 APNNTIVSAGSDAVIRVVKGGESPSKKTYTQYKSTYQFAHKASVTDISLHVLGDYIISSSLDKSLNMYDIVNGTHLTSFGQS----QQLCYTSVAFHPDGMFFAAGTQNGVVKIFDLKSKVNSFNFQGLSTAVNCISFSENGYYLTAADNNTVKLFDLRKA---ATKNSPDIQTITLDNQQIKSINFDYSSQYLGVASSN 461          
BLAST of EY735836 vs. ExPASy Swiss-Prot
Match: YIDC_SCHPO (Uncharacterized WD repeat-containing protein C227.12 OS=Schizosaccharomyces pombe GN=SPAC227.12 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.757e-22
Identity = 59/159 (37.11%), Postives = 91/159 (57.23%), Query Frame = 2
Query:    5 ASAEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLAT-AAHDGVKLWDLRKL 478
            A +E     TG+AD TV +W+ S+         L+ H A V  V  H +  Y V+AS D TW  +D+ +G+ L        +G  EG  S A  PDG ++ +G ++A+ +IWD++S  ++   D H+  + A+++S NGY LAT +A D VK+WDLRK+
Sbjct:  231 ADSEQLTLATGAADNTVCLWKASQSTPL---LRLEGHLARVGRVAFHPSGDYLVSASFDTTWRLWDVHTGVELLM-----QEGHSEGIFSIACQPDGSLVSSGGNDAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPNGYQLATSSADDTVKIWDLRKV 381          
The following BLAST results are available for this feature:
BLAST of EY735836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
PR19B_ARATH4.804e-9573.42Pre-mRNA-processing factor 19 homolog 2 OS=Arabido... [more]
PR19A_ARATH6.859e-9473.18Pre-mRNA-processing factor 19 homolog 1 OS=Arabido... [more]
PRP19_HUMAN3.639e-4444.80Pre-mRNA-processing factor 19 OS=Homo sapiens GN=P... [more]
PRP19_CHICK3.639e-4443.89Pre-mRNA-processing factor 19 OS=Gallus gallus GN=... [more]
PRP19_RAT1.059e-4344.34Pre-mRNA-processing factor 19 OS=Rattus norvegicus... [more]
PRP19_MOUSE1.059e-4344.34Pre-mRNA-processing factor 19 OS=Mus musculus GN=P... [more]
PRP19_BOVIN1.059e-4344.34Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRP... [more]
PRP19_CAEEL1.582e-3941.41Pre-mRNA-processing factor 19 homolog OS=Caenorhab... [more]
PRP19_DICDI9.956e-2636.50Pre-mRNA-processing factor 19 homolog OS=Dictyoste... [more]
YIDC_SCHPO1.757e-2237.11Uncharacterized WD repeat-containing protein C227.... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-005-F12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735836 ID=EY735836; Name=EY735836; organism=Citrus sinensis; type=EST; length=860bp
CCACGCGTCCGCAGAAGGTGATCTATTCTTAACAGGCTCGGCTGATAAGA
CTGTTCGTGTGTGGCAAGGATCTGAAGATGGAAATTATGATTGTAAGCAC
ACTTTGAAGGATCATACTGCTGAGGTGCAAGCTGTCACGGTCCATGCCAC
GAACAAATACTTTGTGACTGCTTCTCTGGATAATACATGGTGCTTTTACG
ATCTTTCTTCTGGTATATGCCTGACACAGGTTTCAGATGCTGGAACCGAC
GGTAGACCTGAAGGTTATACATCTGCAGCTTTTCATCCTGATGGTCTCAT
CCTTGGAACGGGCACCTCAGAAGCTCTTGTTAAGATTTGGGATGTGAAAA
GTCAGGCAAATGTGGCGAAATTTGATGGACATGTTGGAGCAGTTACAGCC
ATATCCTTTTCAGAAAATGGTTACTACCTTGCGACGGCAGCCCATGATGG
TGTGAAGCTGTGGGACCTGCGTAAATTGAAGAACTTCCGGTCATTTGAAT
CTTCTGATTCTGAGACACCTACCAACTCAGTGGATTTCGACCATAGTGGA
TCTTACCTCGCAGTTGCAAGTGCAGATATAAGAGTCTACCAAGTGGCCAC
TGTTACAGCTGATTGGAATTGTATCAAAACTTTTCCTGATTTATCAGGCA
CAGGTAAGGCAACTTGTGTGAAATTTGGGCCCCCATCGCTACTACCTTGC
TGTGGGATCAATGGACCGCCACCTACTGGTATTTGGTCTGCCCTGGCAAG
TATGCCCCGTCAAAACCGAACACAATCCTACACCGCACCCCCTTGAGACG
TTGGGCCCCCGCCCCTTGCAGCCTCCCATCCTCTTCCCCCCCCCCTGCAA
CAAACCCGCC
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