EY756373
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 5.655e-35 Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 2 Query: 17 NRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQF 274 NRVYVGNL+WGVD ALETLF EQGKV++AKVVYDR+SGRSRGFGFVTYSSAEEV+NAI+SL+GVDL GRAIRVS AEARP RRQF Sbjct: 188 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273 HSP 2 Score: 78.5666 bits (192), Expect = 1.109e-14 Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 2 Query: 20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVS 241 +++VGNL + D AL LF G V +V+YD+ +GRSRGFGFVT SS EEV+ A NG +L GRA+RV+ Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN 161
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 5.655e-35 Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 2 Query: 17 NRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQF 274 NRVYVGNL+WGVD ALETLF EQGKV++AKVVYDR+SGRSRGFGFVTYSSAEEV+NAI+SL+GVDL GRAIRVS AEARP RRQF Sbjct: 194 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279 HSP 2 Score: 78.5666 bits (192), Expect = 1.109e-14 Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 2 Query: 20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQF*AVAETS 295 +++VGNL + D AL LF G V +V+YD+ +GRSRGFGFVT SS EEV+ A NG +L GRA+RV+ + P +R+ + E S Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-SGPPPEKRENSSFRENS 178
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 6.253e-34 Identity = 68/90 (75.56%), Postives = 79/90 (87.78%), Query Frame = 2 Query: 5 ASGGNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQF 274 A GNRVYVGNLSWGVDD+ALE+LF EQGKV+EA+V+YDR+SGRS+GFGFVTY S++EV NAI SL+G DL GR IRVS AEARP RRQ+ Sbjct: 200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289 HSP 2 Score: 77.0258 bits (188), Expect = 3.226e-14 Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 2 Query: 20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSR 265 +++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT SS EV+ A NG +L GR +RV+ P R Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKR 173
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 4.053e-33 Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 2 Query: 17 NRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQF 274 NRVYVGNLSWGVDDLAL+ LF EQG V++AKVVYDR+SGRSRGFGFVTYSSA+EV++AIDSLNG+DL GR+IRVS AE RP RRQF Sbjct: 208 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERP-RRQF 292 HSP 2 Score: 80.8777 bits (198), Expect = 2.234e-15 Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = 2 Query: 20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQ 271 +++VGNL + VD AL LF G V +V+YD+ SGRSRGFGFVT S+ EEV+ A NG ++ GRAIRV+ A P++R+ Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPA-PAKRE 171
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 6.913e-33 Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 2 Query: 17 NRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQF 274 NRVYVGNLSWGVDDLAL+ LF EQG V++AKVVYDR+SGRSRGFGFVTYSS++EV++AIDSLNGVDL GR+IRVS AE RP RRQF Sbjct: 207 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERP-RRQF 291 HSP 2 Score: 80.1073 bits (196), Expect = 3.811e-15 Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 2 Query: 20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQ 271 +++VGNL + VD AL LF G V +V+YD+ +GRSRGFGFVT S+ EEV+ A NG ++ GRAIRV+ A P++R+ Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPA-PAKRE 170
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 137.502 bits (345), Expect = 2.011e-32 Identity = 66/90 (73.33%), Postives = 77/90 (85.56%), Query Frame = 2 Query: 5 ASGGNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQF 274 + GNR+YVGNLSWGVDD+ALE LF EQGKV+EA+V+YDR+SGRS+GFGFVT SS++EV AI+SLNG DL GR IRVS AEARP R QF Sbjct: 253 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 342 HSP 2 Score: 78.9518 bits (193), Expect = 8.490e-15 Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 2 Query: 20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQ 271 +++VGNLS+ VD L LF G V +V+YD+ +GRSRGFGFVT S+A EV+ A NG + GR +RV+ P R + Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREE 183
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 4.062e-25 Identity = 56/85 (65.88%), Postives = 68/85 (80.00%), Query Frame = 2 Query: 20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQF 274 RVYVGNL W VD+ LE LF E GKV+EA+VVYDRE+GRSRGFGFVT S +E++ AI +L+G +L GRAIRV+VAE RP RR + Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRRGY 329 HSP 2 Score: 77.0258 bits (188), Expect = 3.226e-14 Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 2 Query: 20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSR 265 +++VGNL++ V+ AL LF + G V A+V+Y+RE+ +SRGFGFVT SS +E + A++ N DL GR + V+ A R SR Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSR 232
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.229e-23 Identity = 52/85 (61.18%), Postives = 64/85 (75.29%), Query Frame = 2 Query: 20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQF 274 R+YVGN+ WG+DD LE LF E GKV+ A+VVYDRE+GRSRGFGFVT +S E+ +AI +L+G L GR IRV+VAE R R F Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRNTF 315 HSP 2 Score: 71.2478 bits (173), Expect = 1.770e-12 Identity = 35/82 (42.68%), Postives = 53/82 (64.63%), Query Frame = 2 Query: 20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSR 265 +++VGNL + VD L LF + G V A+V+Y+R++ +SRGFGFVT S+ EE + A++ N D+ GR + V+ A R R Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGER 218
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.106e-22 Identity = 54/82 (65.85%), Postives = 63/82 (76.83%), Query Frame = 2 Query: 20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSR 265 RVYVGNL W VD LE LF E GKV+ A+VV DRE+GRSRGFGFVT SS EV++AI +L+G L GRA+RV+VAE RP R Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRR 231 HSP 2 Score: 75.0998 bits (183), Expect = 1.226e-13 Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = 2 Query: 20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPS 262 +++VGNL + VD L +F G V A+V+Y+RE+ RSRGFGFVT S+ EE + A++ LNG D+ GR + V+ A R S Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGS 136
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 1.887e-22 Identity = 50/85 (58.82%), Postives = 62/85 (72.94%), Query Frame = 2 Query: 20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQF 274 R+YVGN+ W +DD LE +F E GKV+ A+VV+DRESGRSRGFGFVT SS E+ AI +L+G L GR IRV+ AE RP R + Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRNTY 276 HSP 2 Score: 75.8702 bits (185), Expect = 7.187e-14 Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = 2 Query: 20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSR 265 +++VGNL + +D L LF++ G V A+V+Y+RE+ RSRGFGFVT S+ EE D A++ + DL GR + V+ A R SR Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSR 179 The following BLAST results are available for this feature:
BLAST of EY756373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 53
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Sequences
The
following sequences are available for this feature:
EST sequence >EY756373 ID=EY756373; Name=EY756373; organism=Citrus sinensis; type=EST; length=418bpback to top |