EY756359

Overview
NameEY756359
Unique NameEY756359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RK6_ARATH (50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana GN=RPL6 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.532e-46
Identity = 87/112 (77.68%), Postives = 102/112 (91.07%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSREEE 424
            RTLTDNMVVGVSKGFEKKL +VGVGYRA ++G+ LVL+LGFSHPV+M IPD +KV VEENTRITVSGYDKS IGQFAA++RKWRPPEPYKGKGVKY DE++RRK GK+ +++
Sbjct:  112 RTLTDNMVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_MAGSM (50S ribosomal protein L6 OS=Magnetococcus sp. (strain MC-1) GN=rplF PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.102e-36
Identity = 70/110 (63.64%), Postives = 87/110 (79.09%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            +RTL DNMVVGVS+GF K+L++ GVGYRAA++G+ L LSLGFSHPV   +P+G++  VE+NT ITV GYDK  +GQ  A IR WRPPEPYKGKGV+YV E + RK GK +
Sbjct:   68 SRTLLDNMVVGVSQGFSKQLEIQGVGYRAAVKGRTLELSLGFSHPVNYELPNGLEATVEKNTLITVKGYDKEVLGQACAEIRSWRPPEPYKGKGVRYVGEFVLRKEGKKK 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_CLOD6 (50S ribosomal protein L6 OS=Clostridium difficile (strain 630) GN=rplF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.626e-35
Identity = 70/109 (64.22%), Postives = 83/109 (76.15%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            TRTL DNMVVGV+ GFEKKL++ GVGYRA  +G+ LV++LGFSHPV M  P+GI V     T + V G DK  +G +AA IR WR PEPYKGKG+KYVDEVIRRK GK+
Sbjct:   69 TRTLLDNMVVGVNTGFEKKLELKGVGYRAQKQGKKLVMNLGFSHPVEMEDPEGITVEAPNQTELIVKGIDKQLVGNYAAKIRAWRKPEPYKGKGIKYVDEVIRRKEGKT 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_PARUW (50S ribosomal protein L6 OS=Protochlamydia amoebophila (strain UWE25) GN=rplF PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 3.430e-35
Identity = 65/108 (60.19%), Postives = 88/108 (81.48%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            RTL  NMVVG ++GFEKKL+M+GVGYRAA++G +L L LGFSHP ++ IP G+ V V++NT IT+SG+DK  +GQFAA++R  RPPEPY+GKG++Y  E +R+K GK+
Sbjct:   69 RTLIHNMVVGTTEGFEKKLEMIGVGYRAAVQGDLLDLQLGFSHPCKLPIPKGLAVKVDKNTLITISGFDKHLVGQFAATVRSQRPPEPYQGKGIRYAGEFVRKKAGKA 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_AKKM8 (50S ribosomal protein L6 OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=rplF PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.641e-35
Identity = 67/108 (62.04%), Postives = 88/108 (81.48%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            R+L +NMV+GVS+GF K L++VGVG+RAA++G +L L+LG SHP+   IP+G+KV V ENT++TV G DK  +GQFAA +R + PPEPYKGKGV++V EVIRRK GKS
Sbjct:   69 RSLLNNMVIGVSEGFVKNLEIVGVGFRAAVKGNILDLNLGKSHPINQVIPEGLKVTVTENTKVTVEGIDKQVVGQFAAEVRAYYPPEPYKGKGVRFVGEVIRRKEGKS 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_NITOC (50S ribosomal protein L6 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rplF PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.303e-34
Identity = 68/110 (61.82%), Postives = 86/110 (78.18%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            TR L +NMV GVS+GFE++LQ+VGVGYRA L+G+ LVLSLG+SHPV  T P+G+ + V   T I V GYDK  +GQ AA+IR++RPPEPYKGKGV+Y DEV+ RK  K +
Sbjct:   69 TRALINNMVQGVSQGFERRLQLVGVGYRAQLQGRKLVLSLGYSHPVEFTAPEGLTIEVPSPTEIIVKGYDKQQVGQAAANIRRFRPPEPYKGKGVRYADEVVVRKEAKKK 178          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_MYCPN (50S ribosomal protein L6 OS=Mycoplasma pneumoniae GN=rplF PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.792e-34
Identity = 66/108 (61.11%), Postives = 83/108 (76.85%), Query Frame = 2
Query:   95 LTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSRE 418
            L  N ++GV++GFEKKL++VGVGYRA +EG+ L L LG+SHP++  IP G+ V VE+NT IT+SG  K  +GQFA  +RKWR PEPYKGKGV Y DEVI RK GK+ E
Sbjct:   74 LITNAIIGVTQGFEKKLRLVGVGYRANVEGETLNLQLGYSHPIKEKIPKGLTVKVEKNTEITISGISKELVGQFATEVRKWRKPEPYKGKGVLYFDEVIVRKAGKTAE 181          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_ACHLI (50S ribosomal protein L6 OS=Acholeplasma laidlawii (strain PG-8A) GN=rplF PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.792e-34
Identity = 68/109 (62.39%), Postives = 85/109 (77.98%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            TR L  NMV GVS+GF KKL++ GVGYRA L+G  LVL LGFSH + M +P+GI ++V +NT ITV+G DK+ +GQFAA IRK R PEPYKGKG++YVDE + RK GK+
Sbjct:   69 TRALLFNMVHGVSEGFSKKLEIKGVGYRAQLQGNTLVLQLGFSHNIEMPLPEGISLDVPKNTEITVNGIDKAVVGQFAAEIRKHRKPEPYKGKGIRYVDEYVARKAGKT 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_ALKMQ (50S ribosomal protein L6 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplF PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.952e-34
Identity = 66/109 (60.55%), Postives = 86/109 (78.90%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            +RTL  NMV GV+KG+EKKL++VGVGYRA ++G+ LVLSLGFSHPV +  P+G+ + V   T++TV G DK  +G FAA IR++R PEPYKGKGV+Y  EV+RRK GK+
Sbjct:   69 SRTLVANMVEGVTKGYEKKLELVGVGYRATMQGKKLVLSLGFSHPVEIDQPEGLTIEVPSQTQVTVKGIDKQQVGNFAAKIREYRKPEPYKGKGVRYAGEVVRRKEGKT 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_PELPD (50S ribosomal protein L6 OS=Pelobacter propionicus (strain DSM 2379) GN=rplF PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.103e-33
Identity = 70/119 (58.82%), Postives = 88/119 (73.95%), Query Frame = 2
Query:   62 SSIASSFH--TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            S  A S H  TRTL  NMV GV+KGF+K L++ GVGYRA ++G  LVLSLG+SHPV  TIP G+ + V++ T++ V G+DK  +G+ AA IR +RPPEPYKGKGVKY DE I RK GK+
Sbjct:   58 SGTARSAHGLTRTLVSNMVNGVTKGFQKSLEINGVGYRAEVKGSELVLSLGYSHPVVFTIPAGVTIEVDKLTKVVVKGFDKELVGETAAKIRSFRPPEPYKGKGVKYADETILRKAGKT 176          
The following BLAST results are available for this feature:
BLAST of EY756359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK6_ARATH2.532e-4677.6850S ribosomal protein L6, chloroplastic OS=Arabido... [more]
RL6_MAGSM3.102e-3663.6450S ribosomal protein L6 OS=Magnetococcus sp. (str... [more]
RL6_CLOD62.626e-3564.2250S ribosomal protein L6 OS=Clostridium difficile ... [more]
RL6_PARUW3.430e-3560.1950S ribosomal protein L6 OS=Protochlamydia amoebop... [more]
RL6_AKKM87.641e-3562.0450S ribosomal protein L6 OS=Akkermansia muciniphil... [more]
RL6_NITOC1.303e-3461.8250S ribosomal protein L6 OS=Nitrosococcus oceani (... [more]
RL6_MYCPN3.792e-3461.1150S ribosomal protein L6 OS=Mycoplasma pneumoniae ... [more]
RL6_ACHLI3.792e-3462.3950S ribosomal protein L6 OS=Acholeplasma laidlawii... [more]
RL6_ALKMQ4.952e-3460.5550S ribosomal protein L6 OS=Alkaliphilus metallire... [more]
RL6_PELPD1.103e-3358.8250S ribosomal protein L6 OS=Pelobacter propionicus... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-G01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756359 ID=EY756359; Name=EY756359; organism=Citrus sinensis; type=EST; length=584bp
CCACGCGTCCGGGCAGGTGTATTAGCTGATTGATGCTCAAAGCCGCTTAA
GCGAAATGGCTTCTTCTATCGCCTCTTCTTTCCATACCAGGACACTGACC
GACAACATGGTGGTTGGAGTATCGAAAGGGTTTGAGAAGAAGCTTCAAAT
GGTTGGTGTTGGATATCGTGCTGCATTAGAAGGACAAGTCTTGGTATTGA
GTCTTGGGTTCTCGCATCCAGTTAGGATGACAATCCCAGATGGCATAAAA
GTGAATGTGGAGGAAAACACCAGGATCACCGTTAGTGGATATGATAAAAG
CGCAATTGGTCAGTTTGCTGCTTCCATCAGGAAATGGAGACCCCCAGAAC
CGTACAAGGGAAAAGGAGTGAAATATGTTGATGAAGTTATCAGAAGGAAA
GGAGGGAAAAGCAGGGAAGAAGAAGTAATAGATCTTCGATTGTTTTTTCC
ATTGTCTCATTTTTTTTTTTTTTTTGTTATAAATATGCGTTGGTGAATGT
ACTTAATGCAATTAAAGCAATGCCTTGCAATCTATGAGAGGAATTGATTA
TTTCAAAAGAACAAACTTCCCACACTTTATAACC
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