EY756236

Overview
NameEY756236
Unique NameEY756236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_FLATR (Glycine cleavage system H protein, mitochondrial OS=Flaveria trinervia GN=GDCSH PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 5.638e-37
Identity = 71/93 (76.34%), Postives = 83/93 (89.25%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAA 301
            +VFVELPE G SV +  GFG VESVKATSDVNSPISGE++EVNSKLT+TPGL+N SPYE+GW+IKVKPS+PS+L+SLM P+ YTKFCEEE AA
Sbjct:   71 VVFVELPEVGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLTKTPGLINKSPYEDGWMIKVKPSNPSELDSLMGPKEYTKFCEEEGAA 163          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ORYSJ (Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. japonica GN=GDCSH PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 7.364e-37
Identity = 70/92 (76.09%), Postives = 83/92 (90.22%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENA 298
            +VFVELPE GA V QGG FG VESVKATSD+NSPISGEV+EVN KL++TPGL+NSSPYE+GW+IKVKPSSPS+L++L+DP  YTK CEEE+A
Sbjct:   72 VVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVNDKLSETPGLINSSPYEDGWMIKVKPSSPSELDALLDPAKYTKHCEEEDA 163          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ORYSI (Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. indica GN=GDCSH PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 7.364e-37
Identity = 70/92 (76.09%), Postives = 83/92 (90.22%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENA 298
            +VFVELPE GA V QGG FG VESVKATSD+NSPISGEV+EVN KL++TPGL+NSSPYE+GW+IKVKPSSPS+L++L+DP  YTK CEEE+A
Sbjct:   72 VVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVNDKLSETPGLINSSPYEDGWMIKVKPSSPSELDALLDPAKYTKHCEEEDA 163          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_FLAAN (Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 7.364e-37
Identity = 70/94 (74.47%), Postives = 85/94 (90.43%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH 304
            +VFV+LPE G SV +  GFG VESVKATSDVNSPISGE++EVNSKL++TPGL+NSSPYE+GW+IKVKPS+PS+L+SLM  + YTKFCEEE+AAH
Sbjct:   69 VVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDAAH 162          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_FLAPR (Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei GN=GDCSH PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.640e-36
Identity = 69/94 (73.40%), Postives = 85/94 (90.43%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH 304
            +VFV+LPE G SV +  GFG VESVKATSDVNSPISGE++EVNSKL++TPGL+NSSPYE+GW+IKVKPS+PS+L+SLM  + YTKFCEEE++AH
Sbjct:   69 VVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDSAH 162          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_PEA (Glycine cleavage system H protein, mitochondrial OS=Pisum sativum GN=GDCSH PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.389e-35
Identity = 70/94 (74.47%), Postives = 82/94 (87.23%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH 304
            +VFVELPE G SV +G GFG VESVKATSDVNSPISGEVIEVN+ LT  PGL+NSSPYE+GW+IK+KP+SP +LESL+  + YTKFCEEE+AAH
Sbjct:   72 VVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCEEEDAAH 165          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH2_ARATH (Probable glycine cleavage system H protein 2, mitochondrial OS=Arabidopsis thaliana GN=At1g32470 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 5.277e-35
Identity = 68/94 (72.34%), Postives = 84/94 (89.36%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH 304
            +VFVELPE  +SV +   FG VESVKATS++ SPISGEVIEVN+KLT++PGL+NSSPYE+GW+IKVKPSSP++LE+LM P+ YTKFCEEE+AAH
Sbjct:   73 VVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLTESPGLINSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEEEDAAH 166          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH1_ARATH (Glycine cleavage system H protein 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSH PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 6.892e-35
Identity = 68/94 (72.34%), Postives = 82/94 (87.23%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH 304
            +VFVELPE   SV +   FG VESVKATS++ SPISGE+IEVN KLT++PGL+NSSPYE+GW+IKVKPSSP++LESLM P+ YTKFCEEE+AAH
Sbjct:   72 VVFVELPEDNTSVSKEKSFGAVESVKATSEILSPISGEIIEVNKKLTESPGLINSSPYEDGWMIKVKPSSPAELESLMGPKEYTKFCEEEDAAH 165          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_MESCR (Glycine cleavage system H protein, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCSH PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.075e-31
Identity = 65/92 (70.65%), Postives = 79/92 (85.87%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENA 298
            +VF ELPE GA V  G  F  VESVKATSDVNSPISGE++EVN+KL+ +PGL+NSSPYEEGW++KVKPS+P++LESLM  + YTKFCEEE+A
Sbjct:   72 VVFAELPEGGA-VSAGKPFASVESVKATSDVNSPISGEIVEVNTKLSDSPGLLNSSPYEEGWMVKVKPSNPAELESLMGSKEYTKFCEEEDA 162          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_FLAPU (Glycine cleavage system H protein, mitochondrial (Fragment) OS=Flaveria pubescens GN=GDCSH PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 7.886e-31
Identity = 61/84 (72.62%), Postives = 75/84 (89.29%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYT 274
            +VFV+LPE G SV +  GFG VESVKATSDVNSPISGE++EVNSKL++TPGL+NSSPYE+GW+IKVKPS+PS+L+SLM  + YT
Sbjct:   69 VVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYT 152          
The following BLAST results are available for this feature:
BLAST of EY756236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
GCSH_FLATR5.638e-3776.34Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_ORYSJ7.364e-3776.09Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_ORYSI7.364e-3776.09Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_FLAAN7.364e-3774.47Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_FLAPR1.640e-3673.40Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_PEA1.389e-3574.47Glycine cleavage system H protein, mitochondrial O... [more]
GCSH2_ARATH5.277e-3572.34Probable glycine cleavage system H protein 2, mito... [more]
GCSH1_ARATH6.892e-3572.34Glycine cleavage system H protein 1, mitochondrial... [more]
GCSH_MESCR2.075e-3170.65Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_FLAPU7.886e-3172.62Glycine cleavage system H protein, mitochondrial (... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-B10-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756236 ID=EY756236; Name=EY756236; organism=Citrus sinensis; type=EST; length=450bp
CCACGCGTCCGCATCTTGGAGACTAGTGTTTGTGGAGCTGCCAGAAACTG
GTGCCTCAGTCAAACAAGGCGGCGGCTTCGGGGTTGTAGAAAGTGTGAAA
GCAACCAGTGACGTTAATTCCCCCATTTCTGGTGAAGTTATTGAGGTTAA
CTCCAAGCTCACCCAAACGCCTGGCTTGGTCAATTCAAGCCCATATGAAG
AAGGATGGCTGATAAAGGTAAAGCCTAGCAGCCCTTCGGATTTAGAATCC
TTGATGGATCCACAGGCTTACACGAAATTTTGCGAAGAAGAAAATGCAGC
TCATTAGAATCTTCACACTGTTTCATTTTCTTTTCCCAAAACATATTAAT
AAATCTCTTTGTTTTACTCGCTATTTGTGTTGTAATTATGCATCTTCATG
TAATTAAGACCCATTTCTCCTTTCANNNNAAAAAAAAAAATAAAAAAAAA
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