FE659327 | Citrus Genome Database

Overview


Name	FE659327
Unique Name	FE659327
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	489

Libraries


Library Name	Type
Hong Anliu sweet orange SSH library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1621	contig	Csv1_Contig1621:674..1162.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

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BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 1.526e-71
Identity = 127/162 (78.40%), Postives = 147/162 (90.74%), Query Frame = 1

Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREW 489
            GNIFIKNLD+SIDHKALHDTFSSFGNI+SCK+A D SGQSKG+GFVQ+ N+ESAQ AI+KLNGML+NDKQV+VG FLR+QER++ A KTKF NV+VKNL ESTTD+DLK  FGEYG ITSAVVM+DG+GKSK FGFVNFEN DDAA+AV++LNG KFDD+EW
Sbjct:  124 GNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEW 285

HSP 2 Score: 138.272 bits (347), Expect = 1.823e-32
Identity = 72/171 (42.11%), Postives = 104/171 (60.82%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 483
            N+++KNL +S     L + F  +G I S  +  DG G+SKGFGFV FEN + A  A++ LNG   +DK+ +VG   +K ERET             A K + +N++VKNLD S +DE LK+IF  +GT+TS+ VMRD +G SK  GFV F   ++A +A+  L+GK  + +
Sbjct:  216 NVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESK 386

HSP 3 Score: 73.9442 bits (180), Expect = 4.223e-13
Identity = 37/95 (38.95%), Postives = 58/95 (61.05%), Query Frame = 1

Query:    1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNV 285
            + N+++KNLD SI  + L + FS FG + S K+  D +G SKG GFV F   E A  A+ +L+G +I  K ++V    RK++R  V ++ +F+ V
Sbjct:  317 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRR-VRLQAQFSQV 410

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BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.214e-52
Identity = 102/161 (63.35%), Postives = 127/161 (78.88%), Query Frame = 1

Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE--RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDD 480
            GNIFIKNLD SID+KAL +TFSSFG ILSCK+A D +G+SKG+GFVQFE +ESAQ AIDKLNGML+NDKQVFVGHF+R+QE  R+      +F NV+VKNL +   +++L+K FG++G I+SAVVMRD  G S+CFGFVNFE  + AA AV+ +NG    D
Sbjct:  136 GNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGD 296

HSP 2 Score: 129.798 bits (325), Expect = 6.484e-30
Identity = 68/167 (40.72%), Postives = 101/167 (60.48%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 468
            N+++KNL K I    L  TF  FG I S  +  D SG S+ FGFV FE  E+A +A++K+NG+ + D  ++VG   +K ERE   ++ KF              N+++KNLD+S  DE LK++F EYG +TS+ VM +  G S+ FGFV + N ++A +A+  +NGK
Sbjct:  230 NVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE-ELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGK 395

HSP 3 Score: 90.5077 bits (223), Expect = 4.360e-18
Identity = 48/160 (30.00%), Postives = 83/160 (51.88%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            +++  +LD  +    L D F    N++S ++  D + +S G+ ++ F N   A  A++ LN   + D+ + +        R+     +   N+F+KNLD S  ++ L + F  +GTI S  V  D  G+SK +GFV FE  + A  A+D LNG   +D++
Sbjct:   50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRI----MLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQ 205

HSP 4 Score: 75.8702 bits (185), Expect = 1.111e-13
Identity = 32/81 (39.51%), Postives = 53/81 (65.43%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 249
            N+++KNLD S+D + L + FS +GN+ S K+  +  G S+GFGFV + N E A  A+ ++NG +I  K +++    RK++R
Sbjct:  333 NLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDR 413

[Close]

BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 1.754e-51
Identity = 101/157 (64.33%), Postives = 129/157 (82.17%), Query Frame = 1

Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER---ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 465
            GN+FIKNLD SID+KAL++TFSSFG ILSCK+A D  G+SKG+GFVQFE +E+AQ AIDKLNGML+NDKQVFVGHF+R+Q+R   E+ A+ + F NV+VKNL +  TD++LKK FG+YG I+SAVVM+D  G S+ FGFVNF + + AA AV+ +NG
Sbjct:  132 GNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPS-FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNG 287

HSP 2 Score: 124.405 bits (311), Expect = 2.724e-28
Identity = 64/167 (38.32%), Postives = 100/167 (59.88%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKF-------------NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 468
            N+++KNL K I    L  TF  +G+I S  +  D SG S+ FGFV F + E+A  A++K+NG+ + +  ++VG   +K +RE   ++ KF             +N+++KNLD+S  DE LK++F EYG +TS  VM +  G S+ FGFV + N ++A  A+  +NGK
Sbjct:  226 NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREE-ELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGK 391

HSP 3 Score: 92.4337 bits (228), Expect = 1.147e-18
Identity = 51/160 (31.87%), Postives = 86/160 (53.75%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            ++++ +LD S++   L D F+    + + ++  D + +S G+ +V F N E A  A++ LN   I D+ + +        R+     +   NVF+KNLD S  ++ L + F  +GTI S  V  D  G+SK +GFV FE  + A  A+D LNG   +D++
Sbjct:   46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRI----MLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQ 201

HSP 4 Score: 78.1814 bits (191), Expect = 2.239e-14
Identity = 34/82 (41.46%), Postives = 55/82 (67.07%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 252
            N+++KNLD S++ + L + FS +GN+ SCK+  +  G S+GFGFV + N E A  A+ ++NG +I  K ++V    RK+ER+
Sbjct:  329 NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQ 410

[Close]

BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 8.146e-49
Identity = 93/160 (58.13%), Postives = 126/160 (78.75%), Query Frame = 1

Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKF 474
            GN+FIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+GFV +E  E+AQNAI  +NGML+NDK+VFVGH + K++R++    +K  F NV+VKN+D+ TT+E+ + +F ++G ITSA + RD + GKS+ FGFVNF + D+AA AV+ALN K F
Sbjct:  143 GNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDF 302

HSP 2 Score: 100.908 bits (250), Expect = 3.226e-21
Identity = 69/218 (31.65%), Postives = 100/218 (45.87%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV------------AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-------------------------------GD----------------------GKSKCFGFVNFENVDDAAKAVDALN 462
            N+++KN+D+    +   D F  FG I S  +A D  SG+S+GFGFV F + ++A  A++ LN      ++++VG   +K ERE              A K +  N+++KNL +   DE L+++F  YGTITSA VMRD                               GD                      GKSK FGFV F + D+A+KAV  +N
Sbjct:  237 NVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMN 454

HSP 3 Score: 87.4261 bits (215), Expect = 3.691e-17
Identity = 48/163 (29.45%), Postives = 85/163 (52.15%), Query Frame = 1

Query:    1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            + ++++  LD S+    L + FSS G + S ++  D  + +S G+ +V + N    + A++ LN  LI  +   +       +R+    KT   NVF+KNLD +  ++ L   F  +G I S  V +D  G SK +GFV++E  + A  A+  +NG   +D++
Sbjct:   54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKK 212

[Close]

BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 3.095e-48
Identity = 89/158 (56.33%), Postives = 121/158 (76.58%), Query Frame = 1

Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471
            GN+FIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+GFV +E  E+A NAI  +NGML+NDK+VFVGH + K++R++    +K  F NV++KN+D+  TDE+ +K+F ++G ITSA + RD +GKS+ FGFVNF   D A  AVD +N K+
Sbjct:  140 GNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKE 297

HSP 2 Score: 107.842 bits (268), Expect = 2.639e-23
Identity = 69/209 (33.01%), Postives = 101/209 (48.33%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE------------TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD----GD-----------------------------------------GKSKCFGFVNFENVDDAAKAVDALN 462
            N++IKN+D+ +  +     F  FG I S  ++ D  G+S+GFGFV F   +SAQ A+D++N   I  ++++VG   +K ERE              A K +  N++VKNL +   DE L+++F  +GTITSA VMRD    G+                                         GKSK FGFV F + D+A+KAV  +N
Sbjct:  234 NVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMN 442

HSP 3 Score: 89.3521 bits (220), Expect = 9.712e-18
Identity = 49/163 (30.06%), Postives = 86/163 (52.76%), Query Frame = 1

Query:    1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            + ++++  LD S+    L++ FSS G + S ++  D  + +S G+ +V + N    + A++ LN  LI  K   +       +R+    KT   NVF+KNLD +  ++ L   F  +G I S  V +D  G SK +GFV++E  + A  A+  +NG   +D++
Sbjct:   51 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKK 209

[Close]

BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 3.095e-48
Identity = 89/158 (56.33%), Postives = 121/158 (76.58%), Query Frame = 1

Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471
            GN+FIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+GFV +E  E+A NAI  +NGML+NDK+VFVGH + K++R++    +K  F NV++KN+D+  TDE+ +K+F ++G ITSA + RD +GKS+ FGFVNF   D A  AVD +N K+
Sbjct:  140 GNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKE 297

HSP 2 Score: 107.071 bits (266), Expect = 4.501e-23
Identity = 69/211 (32.70%), Postives = 101/211 (47.87%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE------------TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD----GD-------------------------------------------GKSKCFGFVNFENVDDAAKAVDALN 462
            N++IKN+D+ +  +     F  FG I S  ++ D  G+S+GFGFV F   +SAQ A+D++N   I  ++++VG   +K ERE              A K +  N++VKNL +   DE L+++F  +GTITSA VMRD    G+                                           GKSK FGFV F + D+A+KAV  +N
Sbjct:  234 NVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMN 444

HSP 3 Score: 89.3521 bits (220), Expect = 9.712e-18
Identity = 49/163 (30.06%), Postives = 86/163 (52.76%), Query Frame = 1

Query:    1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            + ++++  LD S+    L++ FSS G + S ++  D  + +S G+ +V + N    + A++ LN  LI  K   +       +R+    KT   NVF+KNLD +  ++ L   F  +G I S  V +D  G SK +GFV++E  + A  A+  +NG   +D++
Sbjct:   51 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKK 209

[Close]

BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 189.889 bits (481), Expect = 5.280e-48
Identity = 95/162 (58.64%), Postives = 123/162 (75.93%), Query Frame = 1

Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 483
            GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+  D +G SKG+GFV FE +E+A+ AIDK+NGML+ND++VFVG F  ++ERE    A   +F NV++KN  +   DE LK++FG+YG   S  VM D +GKSK FGFV+FE  +DA KAVD +NGK  + +
Sbjct:   99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGK 259

HSP 2 Score: 136.732 bits (343), Expect = 5.305e-32
Identity = 75/167 (44.91%), Postives = 105/167 (62.87%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 468
            N++IKN    ++ + L + F  +G  LS K+ TD +G+SKGFGFV FE  E AQ A+D++NG  +N K +FVG   +K ER+T  +K KF              N++VKNLD+   DE L+K F  +GTITSA VM +G G+SK FGFV F + ++A KAV  +NG+
Sbjct:  192 NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGR 356

HSP 3 Score: 86.2705 bits (212), Expect = 8.222e-17
Identity = 50/161 (31.06%), Postives = 91/161 (56.52%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            ++++ +L + +    L++ FS  G ILS ++  D  + +S G+ +V F+    A+ A+D +N  +I  + V +       +R+    K+   N+F+KNLD+S  ++ L   F  +G I S  V+ D +G SK +GFV+FE  + A +A+D +NG   +DR+
Sbjct:   12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRK 167

HSP 4 Score: 72.0182 bits (175), Expect = 1.605e-12
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 252
            N+++KNLD  ID + L   F  FG I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  295 NLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375

[Close]

BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.176e-47
Identity = 94/163 (57.67%), Postives = 124/163 (76.07%), Query Frame = 1

Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+  D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F  ++ERE    A   +F NV++KN  E   DE LK++FG++G   S  VM D  GKSK FGFV+FE  +DA KAVD +NGK+ + ++
Sbjct:   99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260

HSP 2 Score: 145.206 bits (365), Expect = 1.491e-34
Identity = 78/167 (46.71%), Postives = 107/167 (64.07%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 468
            N++IKN  + +D + L + F  FG  LS K+ TD SG+SKGFGFV FE  E AQ A+D++NG  +N KQ++VG   +K ER+T  +K KF              N++VKNLD+   DE L+K F  +GTITSA VM +G G+SK FGFV F + ++A KAV  +NG+
Sbjct:  192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGR 356

HSP 3 Score: 85.1149 bits (209), Expect = 1.832e-16
Identity = 50/161 (31.06%), Postives = 90/161 (55.90%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            ++++ +L   +    L++ FS  G ILS ++  D  + +S G+ +V F+    A+ A+D +N  +I  K V +       +R+    K+   N+F+KNLD+S  ++ L   F  +G I S  V+ D +G SK +GFV+FE  + A +A++ +NG   +DR+
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167

HSP 4 Score: 74.3294 bits (181), Expect = 3.233e-13
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 252
            N+++KNLD  ID + L   FS FG I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375

[Close]

BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.536e-47
Identity = 94/163 (57.67%), Postives = 124/163 (76.07%), Query Frame = 1

Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+  D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F  ++ERE    A   +F NV++KN  E   DE LK++FG++G   S  VM D  GKSK FGFV+FE  +DA KAVD +NGK+ + ++
Sbjct:   99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260

HSP 2 Score: 145.206 bits (365), Expect = 1.491e-34
Identity = 78/167 (46.71%), Postives = 107/167 (64.07%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 468
            N++IKN  + +D + L + F  FG  LS K+ TD SG+SKGFGFV FE  E AQ A+D++NG  +N KQ++VG   +K ER+T  +K KF              N++VKNLD+   DE L+K F  +GTITSA VM +G G+SK FGFV F + ++A KAV  +NG+
Sbjct:  192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGR 356

HSP 3 Score: 85.1149 bits (209), Expect = 1.832e-16
Identity = 50/161 (31.06%), Postives = 90/161 (55.90%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            ++++ +L   +    L++ FS  G ILS ++  D  + +S G+ +V F+    A+ A+D +N  +I  K V +       +R+    K+   N+F+KNLD+S  ++ L   F  +G I S  V+ D +G SK +GFV+FE  + A +A++ +NG   +DR+
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167

HSP 4 Score: 74.3294 bits (181), Expect = 3.233e-13
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 252
            N+++KNLD  ID + L   FS FG I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375

[Close]

BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.006e-47
Identity = 94/163 (57.67%), Postives = 123/163 (75.46%), Query Frame = 1

Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+  D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F  ++ERE    A   +F NV++KN  E   DE LK +FG++G   S  VM D  GKSK FGFV+FE  +DA KAVD +NGK+ + ++
Sbjct:   99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260

HSP 2 Score: 146.747 bits (369), Expect = 5.126e-35
Identity = 79/167 (47.31%), Postives = 107/167 (64.07%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 468
            N++IKN  + +D + L D F  FG  LS K+ TD SG+SKGFGFV FE  E AQ A+D++NG  +N KQ++VG   +K ER+T  +K KF              N++VKNLD+   DE L+K F  +GTITSA VM +G G+SK FGFV F + ++A KAV  +NG+
Sbjct:  192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGR 356

HSP 3 Score: 83.5741 bits (205), Expect = 5.329e-16
Identity = 50/161 (31.06%), Postives = 89/161 (55.28%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            ++++ +L        L++ FS  G ILS ++  D  + +S G+ +V F+    A+ A+D +N  +I  K V +       +R+    K+   N+F+KNLD+S  ++ L   F  +G I S  V+ D +G SK +GFV+FE  + A +A++ +NG   +DR+
Sbjct:   12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167

HSP 4 Score: 74.3294 bits (181), Expect = 3.233e-13
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 252
            N+++KNLD  ID + L   FS FG I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375

The following BLAST results are available for this feature:

BLAST of FE659327 vs. ExPASy Swiss-Prot

BLAST of FE659327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150


Match Name	E-value	Identity	Description
PABP2_ARATH	1.526e-71	78.40	Polyadenylate-binding protein 2 OS=Arabidopsis tha...	[more]
PABP3_ARATH	1.214e-52	63.35	Polyadenylate-binding protein 3 OS=Arabidopsis tha...	[more]
PABP5_ARATH	1.754e-51	64.33	Polyadenylate-binding protein 5 OS=Arabidopsis tha...	[more]
PABP_COCIM	8.146e-49	58.13	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_NEOFI	3.095e-48	56.33	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_ASPFU	3.095e-48	56.33	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABPA_XENLA	5.280e-48	58.64	Polyadenylate-binding protein 1-A OS=Xenopus laevi...	[more]
PABP1_RAT	1.176e-47	57.67	Polyadenylate-binding protein 1 OS=Rattus norvegic...	[more]
PABP1_MOUSE	1.536e-47	57.67	Polyadenylate-binding protein 1 OS=Mus musculus GN...	[more]
PABP1_PONAB	2.006e-47	57.67	Polyadenylate-binding protein 1 OS=Pongo abelii GN...	[more]

Pages

Properties


Property Name	Value
Genbank description	A141 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FE659327 ID=FE659327; Name=FE659327; organism=Citrus sinensis; type=EST; length=489bp
ACTGGGAACATATTTATCAAGAATTTGGACAAGTCTATTGATCACAAAGC
ATTACACGATACATTTTCTTCATTCGGAAACATTCTTTCTTGTAAGATAG
CTACTGATGGTTCTGGCCAGTCCAAAGGTTTCGGTTTTGTGCAATTTGAG
AACAAAGAATCTGCTCAAAATGCTATTGATAAGTTAAATGGCATGCTTAT
TAATGATAAACAAGTGTTCGTTGGGCACTTTCTTCGTAAGCAGGAAAGAG
AAACTGTAGCAATTAAAACAAAATTCAATAACGTATTTGTCAAAAACCTT
GATGAGTCAACTACAGATGAAGATTTGAAGAAAATTTTTGGTGAGTATGG
AACAATTACCAGTGCAGTAGTGATGAGGGATGGAGATGGAAAATCCAAGT
GTTTTGGATTTGTGAATTTTGAAAATGTAGATGATGCTGCCAAAGCTGTT
GATGCTCTTAATGGAAAGAAATTTGATGACAGAGAATGG