EY720905

Overview
NameEY720905
Unique NameEY720905
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY720905 vs. ExPASy Swiss-Prot
Match: MED10_ANOGA (Mediator of RNA polymerase II transcription subunit 10 OS=Anopheles gambiae GN=MED10 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.842e-15
Identity = 40/120 (33.33%), Postives = 72/120 (60.00%), Query Frame = 1 
Query:  196 PKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFRMKL 555
            P +NL    N ++  +  + Q+ + VS F    Q  L Q++ SLV+ L  + KL  + ++ VP+EV + ID G+NP  +T+D I+  + KN+  KGK D+++  + +L+ EL +TF +++
Sbjct:    4 PLENLE---NHLEMFIENVRQIRIIVSDFQPQGQNVLNQKIQSLVTGLQEIDKLKNQIDVNVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELSETFPVEI 120
[Close]
BLAST of EY720905 vs. ExPASy Swiss-Prot
Match: MED10_AEDAE (Mediator of RNA polymerase II transcription subunit 10 OS=Aedes aegypti GN=MED10 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.842e-15
Identity = 40/116 (34.48%), Postives = 70/116 (60.34%), Query Frame = 1 
Query:  196 PKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTF 543
            P +NL    N ++  +  + Q+ + VS F    Q  L Q++ SLV+ L  + KL  + ++ VP+EV + ID G+NP  +T+D I+  + KN+  KGK D+++  + +L+ EL++TF
Sbjct:    4 PLENLE---NHLEMFIENVRQIRIIVSDFQPQGQNVLNQKIQSLVTGLQEIDKLKNQVDVNVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELDETF 116
[Close]
BLAST of EY720905 vs. ExPASy Swiss-Prot
Match: MED10_XENTR (Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus tropicalis GN=med10 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.366e-12
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 1 
Query:  229 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTF 543
            ++K +  + QL + VS F  +SQ  L Q+LN LV+ L ++ K  ++ + I VP+EV + ID G+NP  +T++ +   +AKN+  KGK D  K  +  L+ EL + F
Sbjct:   12 LEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFLVTGLQDIDKCRQQLHDITVPLEVFDYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLKKFKSLLIQELSKVF 117
[Close]
BLAST of EY720905 vs. ExPASy Swiss-Prot
Match: MED10_XENLA (Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus laevis GN=med10 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.784e-12
Identity = 39/115 (33.91%), Postives = 67/115 (58.26%), Query Frame = 1 
Query:  202 QNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTF 543
            +  + + + ++K +  + QL + VS F  +SQ  L Q+LN LV  L ++ K  ++ + I VP+EV + ID G+NP  +T++ +   +AKN+  KGK D  K  +  L+ EL + F
Sbjct:    3 EKFDNLEDHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFLVRGLQDIDKCRQQLHDITVPLEVFDYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLKKFKSLLIQELSKVF 117
[Close]
BLAST of EY720905 vs. ExPASy Swiss-Prot
Match: MED10_MOUSE (Mediator of RNA polymerase II transcription subunit 10 OS=Mus musculus GN=Med10 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.331e-12
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = 1 
Query:  229 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTF 543
            ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++ + I VP+EV   ID G+NP  +T++ +   +AKN+  KGK D  K  +  L+ EL + F
Sbjct:   12 LEKFVENIRQLGIIVSDFQPSSQAGLSQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVF 117
[Close]
BLAST of EY720905 vs. ExPASy Swiss-Prot
Match: MED10_PONAB (Mediator of RNA polymerase II transcription subunit 10 OS=Pongo abelii GN=MED10 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.044e-12
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = 1 
Query:  229 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTF 543
            ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++ + I VP+EV   ID G+NP  +T++ +   +AKN+  KGK D  K  +  L+ EL + F
Sbjct:   12 LEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVF 117
[Close]
BLAST of EY720905 vs. ExPASy Swiss-Prot
Match: MED10_HUMAN (Mediator of RNA polymerase II transcription subunit 10 OS=Homo sapiens GN=MED10 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.044e-12
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = 1 
Query:  229 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTF 543
            ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++ + I VP+EV   ID G+NP  +T++ +   +AKN+  KGK D  K  +  L+ EL + F
Sbjct:   12 LEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVF 117
[Close]
BLAST of EY720905 vs. ExPASy Swiss-Prot
Match: MED10_BOVIN (Mediator of RNA polymerase II transcription subunit 10 OS=Bos taurus GN=MED10 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.044e-12
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = 1 
Query:  229 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTF 543
            ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++ + I VP+EV   ID G+NP  +T++ +   +AKN+  KGK D  K  +  L+ EL + F
Sbjct:   12 LEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVF 117
[Close]
BLAST of EY720905 vs. ExPASy Swiss-Prot
Match: MED10_MACFA (Mediator of RNA polymerase II transcription subunit 10 OS=Macaca fascicularis GN=MED10 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.973e-11
Identity = 37/106 (34.91%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:  229 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTF 543
            ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++ + I VP+EV   ID G+NP  +T++ +   +AKN+  KGK D  K  +  L+  L + F
Sbjct:   12 LEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQGLSKVF 117
[Close]
BLAST of EY720905 vs. ExPASy Swiss-Prot
Match: MED10_DANRE (Mediator of RNA polymerase II transcription subunit 10 OS=Danio rerio GN=med10 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.973e-11
Identity = 36/106 (33.96%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:  229 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTF 543
            ++K +  + QL + VS F  +SQ  L Q+LN +++ L ++ K  ++ + I VP+EV   ID G+NP  +T++ +   +AKN+  KGK D     +  L+ EL + F
Sbjct:   12 LEKFVENIRQLGIIVSDFQPSSQTGLNQKLNFMITGLQDIEKCRQQLHDINVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLTKFKSLLISELGKVF 117
The following BLAST results are available for this feature:
BLAST of EY720905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
MED10_ANOGA3.842e-1533.33Mediator of RNA polymerase II transcription subuni... [more]
MED10_AEDAE3.842e-1534.48Mediator of RNA polymerase II transcription subuni... [more]
MED10_XENTR1.366e-1236.79Mediator of RNA polymerase II transcription subuni... [more]
MED10_XENLA1.784e-1233.91Mediator of RNA polymerase II transcription subuni... [more]
MED10_MOUSE2.331e-1235.85Mediator of RNA polymerase II transcription subuni... [more]
MED10_PONAB3.044e-1235.85Mediator of RNA polymerase II transcription subuni... [more]
MED10_HUMAN3.044e-1235.85Mediator of RNA polymerase II transcription subuni... [more]
MED10_BOVIN3.044e-1235.85Mediator of RNA polymerase II transcription subuni... [more]
MED10_MACFA1.973e-1134.91Mediator of RNA polymerase II transcription subuni... [more]
MED10_DANRE1.973e-1133.96Mediator of RNA polymerase II transcription subuni... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-015-H02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720905 ID=EY720905; Name=EY720905; organism=Citrus sinensis; type=EST; length=901bp
CACGCGTCCGCCCGGTCTTCTAAATAGCGATTCGCAGAAGTTTTGGGGTC
CTGAAGAAGAAGAAAACTGTAATTACAGTTTCCTGATACGAGAGAAAGAA
AGATGGATGGACCGGTGGGGGGCAGCAGAGCAAGTGGTGGCAATGGAATG
GTGAGCAATCAAGCAAACGATACAACAACTGTGGCAGCTGACGATCCGAA
GCAGAACTTGAACCAGGTTATTAATTCAGTTCAGAAGACTCTTGGGCTCC
TACATCAACTCTACCTTACCGTATCTTCCTTCAATGCTGCCTCCCAGCTC
CCTCTCCTACAAAGACTCAATTCTCTTGTTTCGGAGCTTGACAACATGGT
TAAGTTGTCTGAGAAGTGCAATATTCAAGTGCCCATGGAAGTGCTTAATT
TGATTGATGACGGAAAAAATCCTGATGAATTCACAAGGGATGTTATAAAC
AGCTGCATTGCTAAAAACCAAGTCACCAAAGGAAAAACTGATGCTTTCAA
GAGTTTACGTAAGCATCTTTTGGACGAACTTGAGCAGACATTCCGGATGA
AGTTGAAGCATATAGAGAGATACGTGCAAATTCTGCTGCTGAAGCAAAGC
GTCTTGCTCCATCACAAAGTATGTTGCCAATGGAGATGTGAAAGTTAAAT
CTGAGCTTTAAATGTCCCCATTCATGCAGAGTGTTGGGGCTCTTTCGACT
ACTACTTTTCTCATGGTATGTCATGAGTCGTTCCAGTTCAGCAGCATTCA
NTGATTNAATCTGAAAAAATTGGGTTACTGTATACCATTATGAGGCANTT
CATTTAGAATAAACAATGGCCGGTATACGTGCTTCAATGCATTCATTATG
TGGTTACCTGCTAATGATTGTGATATTTCATGCTTTGATGCCTCCTAACG
T
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