EY711304

Overview
NameEY711304
Unique NameEY711304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711304 vs. ExPASy Swiss-Prot
Match: SBNO1_MOUSE (Protein strawberry notch homolog 1 OS=Mus musculus GN=Sbno1 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.112e-14
Identity = 60/200 (30.00%), Postives = 92/200 (46.00%), Query Frame = 1
Query:   28 NRLFELFISILDLLVQNARLEGNLDSGIVDMKANI--IELQGTPKTVHVDNMSGASTMLFTFTLDRGITWESASTKLDEKQKDGLGSPNDGFYESKREWLGRRHFILAFESTAASGMYKIARPAVGESLREMPLAELKNKYRKLSSIEKARSGWEDDYEVSSKQCMPG------PKCKLANYCTVGRRIQEVNVLRGLIL 603
            N LF+ F   L  +VQNA+  G  D GI+D+ +    +      K +     +     L+T +++RG++WE A+    E     L  P+DGFY S +    ++  IL  E      ++ I RP  G+ L+    A+LK KY+K+ S + A   W D Y  S+  C          K  L   C +G R +   VL G +L
Sbjct: 1116 NALFQYFADTLTAVVQNAKKSGRYDMGILDLGSGDEKVRKSDVKKFLTPGYSTSGHVELYTISVERGMSWEEATKIWAE-----LTGPDDGFYLSLQIRNNKKTAILVKEVNPKKKLFLIYRPNTGKQLKLEIYADLKKKYKKVVS-DDALVHWLDQYNSSADTCTHAYWRGNCKKASLGLVCEIGLRCRTYYVLCGSVL 1309          
BLAST of EY711304 vs. ExPASy Swiss-Prot
Match: SBNO1_HUMAN (Protein strawberry notch homolog 1 OS=Homo sapiens GN=SBNO1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.112e-14
Identity = 59/200 (29.50%), Postives = 92/200 (46.00%), Query Frame = 1
Query:   28 NRLFELFISILDLLVQNARLEGNLDSGIVDMKANI--IELQGTPKTVHVDNMSGASTMLFTFTLDRGITWESASTKLDEKQKDGLGSPNDGFYESKREWLGRRHFILAFESTAASGMYKIARPAVGESLREMPLAELKNKYRKLSSIEKARSGWEDDYEVSSKQCMPG------PKCKLANYCTVGRRIQEVNVLRGLIL 603
            N LF+ F   L  +VQNA+  G  D GI+D+ +    +      K +     +     L+T +++RG++WE A+    E     L  P+DGFY S +    ++  IL  E      ++ + RP  G+ L+    A+LK KY+K+ S + A   W D Y  S+  C          K  L   C +G R +   VL G +L
Sbjct: 1119 NALFQYFADTLTAVVQNAKKNGRYDMGILDLGSGDEKVRKSDVKKFLTPGYSTSGHVELYTISVERGMSWEEATKIWAE-----LTGPDDGFYLSLQIRNNKKTAILVKEVNPKKKLFLVYRPNTGKQLKLEIYADLKKKYKKVVS-DDALMHWLDQYNSSADTCTHAYWRGNCKKASLGLVCEIGLRCRTYYVLCGSVL 1312          
BLAST of EY711304 vs. ExPASy Swiss-Prot
Match: SBNO1_RAT (Protein strawberry notch homolog 1 OS=Rattus norvegicus GN=Sbno1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.477e-14
Identity = 59/200 (29.50%), Postives = 92/200 (46.00%), Query Frame = 1
Query:   28 NRLFELFISILDLLVQNARLEGNLDSGIVDMKANI--IELQGTPKTVHVDNMSGASTMLFTFTLDRGITWESASTKLDEKQKDGLGSPNDGFYESKREWLGRRHFILAFESTAASGMYKIARPAVGESLREMPLAELKNKYRKLSSIEKARSGWEDDYEVSSKQCMPG------PKCKLANYCTVGRRIQEVNVLRGLIL 603
            N LF+ F   L  +VQNA+  G  D GI+D+ +    +      K +     +     L+T +++RG++W+ A+    E     L  P+DGFY S +    ++  IL  E      ++ I RP  G+ L+    A+LK KY+K+ S + A   W D Y  S+  C          K  L   C +G R +   VL G +L
Sbjct:  995 NALFQYFADTLTAVVQNAKKNGRYDMGILDLGSGDEKVRKSDVKKFLTPGYSTSGHVELYTISVERGMSWDEATKIWAE-----LTGPDDGFYLSLQIRNNKKTAILVKEVNPKKKLFLIYRPNTGKQLKLEIYADLKKKYKKVVS-DDALVHWLDQYNSSADTCTHAYWRGNCKKASLGLVCEIGLRCRTYYVLCGSVL 1188          
BLAST of EY711304 vs. ExPASy Swiss-Prot
Match: SBNO_DROME (Protein strawberry notch OS=Drosophila melanogaster GN=sno PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.967e-13
Identity = 68/234 (29.06%), Postives = 104/234 (44.44%), Query Frame = 1
Query:   13 PPDIPNRLFELFISILDLLVQNARLEGNLDSGIVDMKA---NIIELQGTPKTVHVDNMSGASTMLFTFTLDRGITWESASTKLDEKQKDGLGSPNDGFYESKREWLGRRHFILA--FESTAASG----------------------MYKIARPAVGESLREMPLAELKNKYRKLSSIEKARSGWEDDYEVSSKQCMP---GPKCK---LANYCTVGRRIQEVNVLRGLILPCLG 615
            P D+ NRLF+ F   +  ++Q A+  G  D GI+D+ A   N+  ++   + V       A T + T  ++RG+ W+ A  K  +     L + N+GFY S +    +R  I+    ES  +S                       M +I RP  G  +R   L EL+ KYRK++S E+A   W + Y+ S   C        C+   L N C VG R +  +VL G +L   G
Sbjct: 1551 PVDLQNRLFKYFTDTMTAIIQQAKRGGRFDLGILDLGAAGENVTRVR-LIRFVRKHATGVAPTEMHTVRVERGMIWQEAIDKYAD-----LFNENEGFYLSHQLRNQKRTAIMVVILESRNSSSTSSTTDLDSGSKKKKTHSKKEIMCQIYRPNTGLQVRHESLFELEKKYRKVAS-EEAEPHWTEQYDASVNTCSHAYWNGNCRNVSLGNDCEVGLRQRLYHVLAGSVLSVWG 1777          
BLAST of EY711304 vs. ExPASy Swiss-Prot
Match: SBNO2_MOUSE (Protein strawberry notch homolog 2 OS=Mus musculus GN=Sbno2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.371e-11
Identity = 55/205 (26.83%), Postives = 92/205 (44.88%), Query Frame = 1
Query:   28 NRLFELFISILDLLVQNARLEGNLDSGIVDMKANIIELQGTPKTVHV---DNMSGASTMLFTFTLDRGITWESASTKLDEKQKDGLGSPNDGFYESKREWLGRRHFILAFESTAASGMYKIARPAVGESLREMPLAELKNKYRKLSSIEKARSGWEDDYEVSSKQCMP---GPKCKL---ANYCTVGRRIQEVNVLRGLILPCLG 615
            N LF+ F    D L++  + EG  D GI+D+   I E+    + V +       G        ++DRG+ WE A T+  E     L  P DGFY S +    +   +LA ++      + + +P +G   +   L  L  K+ ++ ++E+AR  WE  Y +S + C       +C+L      C  G R++   +L G +L   G
Sbjct:  975 NALFQYFSDTFDHLIEIDKKEGRYDMGILDLAPGINEIHEESQQVFLAPGHPQDGQVVFYKQISVDRGMKWEEALTRSLE-----LKGPYDGFYLSYKVRGSKMSCLLAEQNRGE--YFTVYKPNIGRQSQLETLDSLCRKFHRV-TVEEAREPWESSYALSLEHCSHTTWNQRCRLTQEGKCCAQGLRLRHHYMLCGALLRVWG 1171          
BLAST of EY711304 vs. ExPASy Swiss-Prot
Match: SBNO2_HUMAN (Protein strawberry notch homolog 2 OS=Homo sapiens GN=SBNO2 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 5.709e-11
Identity = 53/204 (25.98%), Postives = 92/204 (45.10%), Query Frame = 1
Query:   28 NRLFELFISILDLLVQNARLEGNLDSGIVDMKANIIELQGTPKTVHV--DNMSGASTMLFTFTLDRGITWESASTKLDEKQKDGLGSPNDGFYESKREWLGRRHFILAFESTAASGMYKIARPAVGESLREMPLAELKNKYRKLSSIEKARSGWEDDYEVSSKQCMPGP---KCKLANY---CTVGRRIQEVNVLRGLILPCLG 615
            N LF+ F    D L++  + EG  D GI+D+   I E+    + V +   +      + +  ++DRG+ WE A  K        L  P DGFY S +    +   +LA ++      + + +P +G   +   L  L+ K+ ++++ E+A+  WE  Y +S   C        C+LA     C  G R++   +L G +L   G
Sbjct:  981 NALFQYFSDTFDHLIEMDKREGKYDMGILDLAPGIEEIYEESQQVFLAPGHPQDGQVVFYKISVDRGLKWEDAFAK-----SLALTGPYDGFYLSYKVRGNKPSCLLAEQNRGQ--FFTVYKPNIGRQSQLEALDSLRRKFHRVTA-EEAKEPWESGYALSLTHCSHSAWNRHCRLAQEGKDCLQGLRLRHHYMLCGALLRVWG 1176          
The following BLAST results are available for this feature:
BLAST of EY711304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SBNO1_MOUSE1.112e-1430.00Protein strawberry notch homolog 1 OS=Mus musculus... [more]
SBNO1_HUMAN1.112e-1429.50Protein strawberry notch homolog 1 OS=Homo sapiens... [more]
SBNO1_RAT2.477e-1429.50Protein strawberry notch homolog 1 OS=Rattus norve... [more]
SBNO_DROME7.967e-1329.06Protein strawberry notch OS=Drosophila melanogaste... [more]
SBNO2_MOUSE4.371e-1126.83Protein strawberry notch homolog 2 OS=Mus musculus... [more]
SBNO2_HUMAN5.709e-1125.98Protein strawberry notch homolog 2 OS=Homo sapiens... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-B10-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711304 ID=EY711304; Name=EY711304; organism=Citrus sinensis; type=EST; length=897bp
CCACGCGTCCGGCCACCTGATATTCCCAATAGACTATTTGAGTTGTTCAT
CAGCATCTTGGATCTTCTTGTTCAGAATGCACGTCTAGAAGGAAATCTTG
ATTCGGGGATTGTTGATATGAAAGCTAACATTATTGAACTGCAAGGAACT
CCAAAGACTGTTCATGTTGATAACATGTCTGGGGCGTCGACTATGCTCTT
TACTTTCACTCTGGATCGTGGAATCACATGGGAGTCTGCTAGTACTAAGC
TAGACGAGAAGCAAAAGGATGGGCTTGGCTCACCTAATGATGGATTCTAT
GAATCTAAGAGAGAATGGTTGGGAAGGCGTCACTTCATTTTAGCATTTGA
GAGTACTGCAGCTTCTGGAATGTATAAAATTGCCCGTCCTGCTGTAGGGG
AGTCCCTGAGGGAAATGCCTTTGGCAGAATTGAAAAATAAATACAGGAAA
TTGTCATCAATAGAGAAGGCTCGCTCTGGTTGGGAAGACGATTATGAAGT
TTCATCTAAACAGTGTATGCCTGGCCCCAAATGTAAGCTTGCCAACTACT
GCACAGTAGGCCGAAGAATCCAAGAAGTAAATGTTTTGCGTGGCCTCATT
CTTCCTTGTTTGGGGCACTATTGAAAAAGACCCTTTCTTCGCGGCCCACC
CAAGCCATAATCGGCTCCGGCCTTGTCGTCTTAAAAACCCCTGCCAATAA
TAAACGAATTGTTGGGCTTTTGGCCCCAATGGCACCATTTAGACAGTGGT
ACAAGATTTGGCTTGTCGTCCAAAATTCAAGGATTGGAATCCAACTTCTG
CGTTTTTTTGGTTGTACCAGACTTGGTCCTGCCCTAAACTTAACAACCCT
CACAGGCCCTGTGCCTTGGGGAAAAAAAAACTTTTCTGAAATGGCCG
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