EY711168

Overview
NameEY711168
Unique NameEY711168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY711168_ssr96 microsatellite EY711168_ssr96:96..115. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10513 contig Csv1_Contig10513:1..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY711168 vs. ExPASy Swiss-Prot
Match: CH62_MAIZE (Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.342e-15
Identity = 64/188 (34.04%), Postives = 90/188 (47.87%), Query Frame = 2
Query:  371 DCTKYESVLVKALNDEAFKALGRA-NLTGLTQGFRMAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITI--------------------------FV---------LDGALVLIYDTKISKLHVIRQASLPCMMQXQSLXXVAEECEK*SLXDIATDFTCTTEKVC 826
            D T   +VL KA+  E  K++    N   L +G  MA DAVV NL   AR I+T EEIAQVGT +ANG+ EIGELIAK  EK  +  +ITI                          F+         L+  L+LI+D K++ +H + +     + + + L  VAE+ E  +L  +  +      KVC
Sbjct:  120 DGTTCATVLTKAIFTEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIADGNTLYNELEVVEGMKLDRGYISPYFITNSKAQKCELEDPLILIHDKKVTNMHAVVKVLEMALKKQRPLLIVAEDVESEALGTLIINKLRAGIKVC 307          
BLAST of EY711168 vs. ExPASy Swiss-Prot
Match: CH61_MAIZE (Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.342e-15
Identity = 64/188 (34.04%), Postives = 90/188 (47.87%), Query Frame = 2
Query:  371 DCTKYESVLVKALNDEAFKALGRA-NLTGLTQGFRMAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITI--------------------------FV---------LDGALVLIYDTKISKLHVIRQASLPCMMQXQSLXXVAEECEK*SLXDIATDFTCTTEKVC 826
            D T   +VL KA+  E  K++    N   L +G  MA DAVV NL   AR I+T EEIAQVGT +ANG+ EIGELIAK  EK  +  +ITI                          F+         L+  L+LI+D K++ +H + +     + + + L  VAE+ E  +L  +  +      KVC
Sbjct:  120 DGTTCATVLTKAIFTEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIADGNTLYNELEVVEGMKLDRGYISPYFITNSKTQKCELEDPLILIHDKKVTNMHAVVKVLEMALKKQKPLLIVAEDVESEALGTLIINKLRAGIKVC 307          
BLAST of EY711168 vs. ExPASy Swiss-Prot
Match: CH61_CUCMA (Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.099e-15
Identity = 62/188 (32.98%), Postives = 91/188 (48.40%), Query Frame = 2
Query:  371 DCTKYESVLVKALNDEAFKALGRA-NLTGLTQGFRMAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITI--------------------------FV---------LDGALVLIYDTKISKLHVIRQASLPCMMQXQSLXXVAEECEK*SLXDIATDFTCTTEKVC 826
            D T   ++L KA+  E  K++    N   L +G  MA D+VV NL  +AR I+T EEIAQVGT +ANG+ EIGELIAK  EK  +  +ITI                          F+         LD  L++IY+ KIS ++ + +     + + + L  V+E+ E  +L  +  +      KVC
Sbjct:  118 DGTTCATILTKAIFTEGCKSVASGMNAMDLRRGISMAVDSVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTMDNELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLIIIYEKKISSINAVVKVLELALKKQRPLLIVSEDVESEALATLILNKLRAGIKVC 305          
BLAST of EY711168 vs. ExPASy Swiss-Prot
Match: CH60A_ARATH (Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana GN=CPN60 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.484e-14
Identity = 64/188 (34.04%), Postives = 91/188 (48.40%), Query Frame = 2
Query:  371 DCTKYESVLVKALNDEAFKALGRA-NLTGLTQGFRMAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITI--------------------------FV---------LDGALVLIYDTKISKLHVIRQASLPCMMQXQSLXXVAEECEK*SLXDIATDFTCTTEKVC 826
            D T   +VL +A+  E  K++    N   L +G  MA DAVV NL  +AR I+T EEIAQVGT +ANG+ EIGELIAK  EK  +  +ITI                          F+         LD  L+LI++ KIS ++ I +     + + + L  V+E+ E  +L  +  +      KVC
Sbjct:  117 DGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKSKARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIQDGKTLFNELEVVEGMKLDRGYTSPYFITNQKTQKCELDDPLILIHEKKISSINSIVKVLELALKRQRPLLIVSEDVESDALATLILNKLRAGIKVC 304          
BLAST of EY711168 vs. ExPASy Swiss-Prot
Match: CH62_CUCMA (Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.317e-14
Identity = 61/188 (32.45%), Postives = 91/188 (48.40%), Query Frame = 2
Query:  371 DCTKYESVLVKALNDEAFKALGRA-NLTGLTQGFRMAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITI--------------------------FV---------LDGALVLIYDTKISKLHVIRQASLPCMMQXQSLXXVAEECEK*SLXDIATDFTCTTEKVC 826
            D T   ++L +A+  E  K++    N   L +G  MA D+VV NL  +AR I+T EEIAQVGT +ANG+ EIGELIAK  EK  +  +ITI                          F+         LD  L+LI++ KIS ++ + +     + + + L  V+E+ E  +L  +  +      KVC
Sbjct:  118 DGTTCATILTRAIFTEGCKSVAAGMNAMDLRRGISMAVDSVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTLFNELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLILIHEKKISSINSVVKVLELALKRQRPLLIVSEDVESDALATLILNKLRAGIKVC 305          
BLAST of EY711168 vs. ExPASy Swiss-Prot
Match: CH60B_ARATH (Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.317e-14
Identity = 61/188 (32.45%), Postives = 90/188 (47.87%), Query Frame = 2
Query:  371 DCTKYESVLVKALNDEAFKALGRA-NLTGLTQGFRMAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITI--------------------------FV---------LDGALVLIYDTKISKLHVIRQASLPCMMQXQSLXXVAEECEK*SLXDIATDFTCTTEKVC 826
            D T   +VL +A+  E  K++    N   L +G ++A D VV NL  +AR I+T EEIAQVGT +ANGD EIGELIAK  E   +  +ITI                          F+         L+  L+LI++ KIS ++ + +     + + + L  VAE+ E  +L  +  +      KVC
Sbjct:  118 DGTTCATVLTRAIFTEGCKSVAAGMNAMDLRRGIKLAVDTVVTNLQSRARMISTSEEIAQVGTISANGDREIGELIAKAMETVGKEGVITIQDGKTLFNELEVVEGMKIDRGYISPYFITNPKTQKCELEDPLILIHEKKISNINAMVKVLELALKKQRPLLIVAEDVESDALATLILNKLRANIKVC 305          
The following BLAST results are available for this feature:
BLAST of EY711168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CH62_MAIZE1.342e-1534.04Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=C... [more]
CH61_MAIZE1.342e-1534.04Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=C... [more]
CH61_CUCMA5.099e-1532.98Chaperonin CPN60-1, mitochondrial OS=Cucurbita max... [more]
CH60A_ARATH1.484e-1434.04Chaperonin CPN60, mitochondrial OS=Arabidopsis tha... [more]
CH62_CUCMA4.317e-1432.45Chaperonin CPN60-2, mitochondrial OS=Cucurbita max... [more]
CH60B_ARATH4.317e-1432.45Chaperonin CPN60-like 1, mitochondrial OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-F04-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711168 ID=EY711168; Name=EY711168; organism=Citrus sinensis; type=EST; length=910bp
CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTTCTAAATGAGCTAA
CTGCCTCTTAACCCAGGAAGTTTAGAAAACAAATGAAGATTTATCAATAA
ATAAATAAATAAATATATAAAGGAAGGAAGAAAAAAAAGGGGGGGGGGGT
GCTGTTTAAGGCTTATGTCTTTGTTTTTGGATCAAACACGGTGCAAGAAA
ATCACATTTGTTTTTGGATCAAATCGTCGGCAAAAGAAAATCACAAAACC
ATGTTCCGGTTTGCTTGTAGCCTCGCCTCCAGGGTCAGGTTGATTAATAC
CACCGGCACCCAGTCGGTTTGTTGTACTTGGAGCAGAAATTATGGCGCTG
AAGACACTAAAAGATTTATTGATTGCACCAAATATGAGAGTGTTCTTGTC
AAAGCCCTGAATGATGAAGCTTTCAAGGCACTTGGAAGAGCGAATCTCAC
AGGCCTAACACAAGGGTTTAGAATGGCTGCTGATGCAGTCGTGAGAAACT
TGGACTGCCAAGCACGAAAGATCACCACATTTGAAGAAATTGCCCAGGTT
GGAACAACAGCAGCCAATGGTGACGGAGAGATTGGCGAGCTTATAGCCAA
GGTTTTTGAGAAGGGTTGGGAAAATGATCTTATTACTATCTTTGTTTTAG
ACGGTGCATTGGTTTTGATCTATGACACAAAAATTTCAAAACTCCATGTT
ATCAGGCAAGCAAGTTTGCCATGTATGATGCAGGNACAAAGCTTATTNGN
TGTTGCTGAAGAATGTGAAAAATGAAGTCTANGAGATATTGCGACAGACT
TCACCTGTACTACTGAAAAAGTTTGTATCATNCAAACTGCTGNATTGNAA
AANATANGAANGCCATCATGGGAGACCCTGCAATTCTCACAGGAGCCAGG
GTTTACTGAA
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