EY744455

Overview
NameEY744455
Unique NameEY744455
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744455 vs. ExPASy Swiss-Prot
Match: YSH1_USTMA (Endoribonuclease YSH1 OS=Ustilago maydis GN=YSH1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.681e-26
Identity = 62/176 (35.23%), Postives = 101/176 (57.39%), Query Frame = 2
Query:   26 IILVHGESHEMGRLKTKLMTELA--DCDTKIITPKNCQSDKMYFNSDKMAKTIGRLAEKTP*FGETVTGILVKKGFTYQIMAPDDLRIFSQLSTANITQRITVPYSGAFGVIKYRLEQIYESVESSTDEESGVPTLRVHNRVTLKHDSENHISMRWTSDPISDMVSYSVVPLVLNI 547
            I+LVHGE + M +L+  L         D KI TP+NC+   + F + + AK IG +A K P  G+ V G+L+ K F Y I+ P DL  F+ LST+ I QR  V  + ++ ++++ L+ +Y  ++   D E G+ TLR+   V ++  + + + + W S   +DMV+ S+V L+L I
Sbjct:  431 IVLVHGEQNNMSKLRAALQARFTARGSDVKIHTPRNCEPLVLQFRAQRTAKAIGTIAAKPPAQGDIVDGLLISKDFAYTILDPKDLTDFTGLSTSTIVQRQRVALAVSWEMVRWHLQGMYGRLQEGVDAEEGLRTLRIMGAVDVRQSARHELLVEWVSSIANDMVADSIVALLLGI 606          
BLAST of EY744455 vs. ExPASy Swiss-Prot
Match: CPSF3_DICDI (Cleavage and polyadenylation specificity factor subunit 3 OS=Dictyostelium discoideum GN=cpsf3 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.169e-25
Identity = 57/178 (32.02%), Postives = 105/178 (58.99%), Query Frame = 2
Query:   26 IILVHGESHEMGRLKTKLMTELADCDTKIITPKNCQSDKMYFNSDKMAKTIGRLAEKTP*FGETVTGILVKKGFTYQIMAPDDLRIFSQLSTANITQRITVPYSGAFGVIKYRLEQIYESVESSTDEESG----VPTLRVHNRVTLKHDSENHISMRWTSDPISDMVSYSVVPLVLNI 547
            ++LVHG+++EM RL+  L+ +    +  ++TPKN  S  + F  +K+AKT+G +    P   + + GILV K FT+ I++  D+  ++ L T  I Q++T+P++  + ++   LEQIYE +  ST+   G     PT+ ++N + L ++    I + W S+ ++DM+  S++ L+  I
Sbjct:  441 VVLVHGDANEMSRLRQSLVAKFKTIN--VLTPKNAMSVALEFRPEKVAKTLGSIITNPPKQNDIIQGILVTKDFTHHILSASDIHNYTNLKTNIIKQKLTLPFAQTYHILISTLEQIYEQIIESTESTGGGGNEKPTITIYNEIKLIYNIGVSIILEWNSNTVNDMICDSIIALISQI 616          
BLAST of EY744455 vs. ExPASy Swiss-Prot
Match: CPSF3_BOVIN (Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus GN=CPSF3 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.139e-25
Identity = 62/184 (33.70%), Postives = 110/184 (59.78%), Query Frame = 2
Query:   26 IILVHGESHEMGRLKTKLMTELADCDT---KIITPKNCQSDKMYFNSDKMAKTIGRLAEKTP*FGETVTGILVKKGFTYQIMAPDDLRIFSQLSTANITQRITVPYSGAFGVIKYRLEQIYESVESSTDEESGVPTLRVHNRVTLKHDSENHISMRWTSDPISDMVSYSVVPLVLNIIRDVPKV 568
            +ILVHGE +EM RLK  L+ E  D D    ++  P+N ++  + F  +K+AK +G LA+K P  G+ V+GILVK+ F Y I++P DL  ++ L+ + + Q   +PY+G F ++ Y+L+++   VE    +E   P L+V   +T+  +    + + W ++P +DM + +V  ++L  ++  PK+
Sbjct:  414 VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLYYQLQKLTGDVEELEIQEK--PALKVFKNITVIQE-PGMVVLEWLANPSNDMYADTVTTVILE-VQSNPKI 593          
BLAST of EY744455 vs. ExPASy Swiss-Prot
Match: CPSF3_HUMAN (Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens GN=CPSF3 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.406e-25
Identity = 62/184 (33.70%), Postives = 110/184 (59.78%), Query Frame = 2
Query:   26 IILVHGESHEMGRLKTKLMTELADCDT---KIITPKNCQSDKMYFNSDKMAKTIGRLAEKTP*FGETVTGILVKKGFTYQIMAPDDLRIFSQLSTANITQRITVPYSGAFGVIKYRLEQIYESVESSTDEESGVPTLRVHNRVTLKHDSENHISMRWTSDPISDMVSYSVVPLVLNIIRDVPKV 568
            +ILVHGE +EM RLK  L+ E  D D    ++  P+N ++  + F  +K+AK +G LA+K P  G+ V+GILVK+ F Y I++P DL  ++ L+ + + Q   +PY+G F ++ Y+L+++   VE    +E   P L+V   +T+  +    + + W ++P +DM + +V  ++L  ++  PK+
Sbjct:  414 VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLCYQLQKLTGDVEELEIQEK--PALKVFKNITVIQE-PGMVVLEWLANPSNDMYADTVTTVILE-VQSNPKI 593          
BLAST of EY744455 vs. ExPASy Swiss-Prot
Match: CPSF3_MOUSE (Cleavage and polyadenylation specificity factor subunit 3 OS=Mus musculus GN=Cpsf3 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.204e-24
Identity = 62/184 (33.70%), Postives = 109/184 (59.24%), Query Frame = 2
Query:   26 IILVHGESHEMGRLKTKLMTELADCDT---KIITPKNCQSDKMYFNSDKMAKTIGRLAEKTP*FGETVTGILVKKGFTYQIMAPDDLRIFSQLSTANITQRITVPYSGAFGVIKYRLEQIYESVESSTDEESGVPTLRVHNRVTLKHDSENHISMRWTSDPISDMVSYSVVPLVLNIIRDVPKV 568
            +ILVHGE +EM RLK  L+ E  D D    ++  P+N ++  + F  +K+AK +G LA+K P  G+ V+GILVK+ F Y I++P DL  ++ L+ + + Q   +PY+G F ++ Y+L+++   VE    +E   P L+V   +T+  +    +   W ++P +DM + +V  ++L  ++  PK+
Sbjct:  414 VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFYLLYYQLQKLTGDVEELDIQEK--PALKVFKSITVVQE-PGMVGSEWLANPSNDMYADTVTTVILE-VQSNPKI 593          
BLAST of EY744455 vs. ExPASy Swiss-Prot
Match: YSH1_CRYNE (Endoribonuclease YSH1 OS=Cryptococcus neoformans GN=YSH1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.683e-24
Identity = 65/176 (36.93%), Postives = 99/176 (56.25%), Query Frame = 2
Query:   26 IILVHGESHEMGRLKTKLMTELA--DCDTKIITPKNCQSDKMYFNSDKMAKTIGRLAEKTP*FGETVTGILVKKGFTYQIMAPDDLRIFSQLSTANITQRITVPYSGAFGVIKYRLEQIYESVESSTDEESGVPTLRVHNRVTLKHDSENHISMRWTSDPISDMVSYSVVPLVLNI 547
            ++LVHGE+ +MGRL+  L    A    +  I TPKNC+   + F  ++M K IG LA   P  G +V G+LV K F+Y +++P DL  F+ LST+ I Q+  V  S  + V+++ LE +Y  VE   +EE G     + N V +   S   + +RW S   +DM++ S + L+L I
Sbjct:  439 VVLVHGEASQMGRLRAALRDTYAAKGQEINIHTPKNCEPLTLTFRQERMVKAIGSLAATRPEHGTSVKGLLVSKDFSYTLLSPADLHDFTGLSTSTIIQKQGVAISVDWAVVRWYLEGMYGEVEEGVEEE-GKAAFIIMNGVQVVQISPTAVELRWKSSSSNDMIADSALALLLGI 613          
BLAST of EY744455 vs. ExPASy Swiss-Prot
Match: YSH1_SCHPO (Endoribonuclease ysh1 OS=Schizosaccharomyces pombe GN=ysh1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.332e-23
Identity = 57/180 (31.67%), Postives = 109/180 (60.56%), Query Frame = 2
Query:   14 HAS*IILVHGESHEMGRLKTKLMTELAD--CDTKIITPKNCQSDKMYFNSDKMAKTIGRLAEKTP*FGETVTGILVKKGFTYQIMAPDDLRIFSQLSTANITQRITVPYSGAFGVIKYRLEQIYESVESSTDEESGVPTLRVHNRVTLKHDSENHISMRWTSDPISDMVSYSVVPLVLNI 547
            +A  IILVHGE   MGRLK+ L ++  +   D K+ TP+NC    + F  +++ + +G++A   P  G+ ++GIL++K   Y++M+ +DLR FS L+T  +TQ+  +P+  +  +  + L+Q++  V+ S   ++G P   V + +TL    E+ +++ W  + ++D ++ SV+ ++L I
Sbjct:  435 NADHIILVHGEQTNMGRLKSALASKFHNRKVDVKVYTPRNCVPLYLPFKGERLVRALGKVAVHKPKEGDIMSGILIQKDANYKLMSAEDLRDFSDLTTTVLTQKQVIPFFSSMELANFHLKQMFGYVKQS-KTKAGQPQYTVMDAITLTLIQEHKLALEWVGNIMNDTIADSVITILLGI 613          
BLAST of EY744455 vs. ExPASy Swiss-Prot
Match: YSH1_ASPFU (Endoribonuclease ysh1 OS=Aspergillus fumigatus GN=ysh1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.433e-19
Identity = 64/182 (35.16%), Postives = 99/182 (54.40%), Query Frame = 2
Query:   26 IILVHGESHEMGRLKTKLMTELAD--CDTKIITPKNCQSDKMYFNSDKMAKTIGRLAEKTP*F----GETVTGILVKKGFTYQIMAPDDLRIFSQLSTANIT--QRITVPYSGAFGVIKYRLEQIYESVESSTDEESGVPTLRVHNRVTLKHDSENHISMRWTSD--PISDMVSYSVVPLVL 541
            +ILVHGE H+M RLK+KL++  AD     K+ TP NC   ++ F  DK+AK +G+LA+  P      G  ++G+LV+ GF   +MAPDDLR ++ L+T  IT  Q IT+  S +  +I++ LE  + ++E     E      +V    T   + E  I      +  P+ +  +Y V+  VL
Sbjct:  465 VILVHGEKHQMMRLKSKLLSLNADKAVKVKVYTPANCDEVRIPFRKDKIAKVVGKLAQVAPPSDQDDGRLMSGVLVQNGFDLSLMAPDDLREYAGLTTTTITCKQHITLS-SASMDLIRWALEGTFGAIEELGSNERS----KVKEESTKAVNGEQEIKEEPADEEIPMEETQTYLVMGCVL 641          
BLAST of EY744455 vs. ExPASy Swiss-Prot
Match: YSH1_EMENI (Endoribonuclease ysh1 OS=Emericella nidulans GN=ysh1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.561e-19
Identity = 57/140 (40.71%), Postives = 87/140 (62.14%), Query Frame = 2
Query:   26 IILVHGESHEMGRLKTKLMTELAD--CDTKIITPKNCQSDKMYFNSDKMAKTIGRLAEKT------P*FGETVTGILVKKGFTYQIMAPDDLRIFSQLSTANIT--QRITVPYSGAFGVIKYRLEQIYESVES-STDEES 412
            +ILVHGE H+M RLK+KL++  A+     K+ TP NC+  ++ F  DK+AK +G+LA+ T         G  + G+LV+ GF   +MAPDDLR ++ L+T  IT  Q IT+  S +  +IK+ LE  + ++E   TDE++
Sbjct:  464 VILVHGEKHQMMRLKSKLLSLNAEKTVKVKVYTPANCEEVRIPFRKDKIAKVVGKLAQTTLPTDNEDGDGPLMAGVLVQNGFDLSLMAPDDLREYAGLATTTITCKQHITLS-SASMDLIKWALEGTFGAIEEIGTDEDA 602          
BLAST of EY744455 vs. ExPASy Swiss-Prot
Match: YSH1_YARLI (Endoribonuclease YSH1 OS=Yarrowia lipolytica GN=YSH1 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.873e-18
Identity = 49/132 (37.12%), Postives = 78/132 (59.09%), Query Frame = 2
Query:   26 IILVHGESHEMGRLKTKLMTELADC-----DTKIITPKNCQSDKMYFNSDKMAKTIGRLAEKTP*FGETVTGILVKKGFTYQIMAPDDLRIFSQLSTANITQRITVPYSGAFGVIKYRLEQIYESVESSTDE 406
            IILVHGE + M RLK  L+ +         +  I  P+NC+  ++ F   K+AKT+G++AE+ P  G+ ++G++V+K F Y +M   DLR    LST+++ +R TV  +    ++KY LEQ++  VE    E
Sbjct:  444 IILVHGELNNMQRLKAALLAKYRGLKNSPREKTIYNPRNCEEVELAFKGVKVAKTVGKMAEEKPHVGQIISGVVVQKDFNYGLMGVADLREHVGLSTSSVLERQTVTVNAGVDLVKYHLEQMFGYVEMRETE 575          
The following BLAST results are available for this feature:
BLAST of EY744455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
YSH1_USTMA1.681e-2635.23Endoribonuclease YSH1 OS=Ustilago maydis GN=YSH1 P... [more]
CPSF3_DICDI3.169e-2532.02Cleavage and polyadenylation specificity factor su... [more]
CPSF3_BOVIN4.139e-2533.70Cleavage and polyadenylation specificity factor su... [more]
CPSF3_HUMAN5.406e-2533.70Cleavage and polyadenylation specificity factor su... [more]
CPSF3_MOUSE1.204e-2433.70Cleavage and polyadenylation specificity factor su... [more]
YSH1_CRYNE2.683e-2436.93Endoribonuclease YSH1 OS=Cryptococcus neoformans G... [more]
YSH1_SCHPO1.332e-2331.67Endoribonuclease ysh1 OS=Schizosaccharomyces pombe... [more]
YSH1_ASPFU4.433e-1935.16Endoribonuclease ysh1 OS=Aspergillus fumigatus GN=... [more]
YSH1_EMENI7.561e-1940.71Endoribonuclease ysh1 OS=Emericella nidulans GN=ys... [more]
YSH1_YARLI2.873e-1837.12Endoribonuclease YSH1 OS=Yarrowia lipolytica GN=YS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-008-G09-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744455 ID=EY744455; Name=EY744455; organism=Citrus sinensis; type=EST; length=909bp
CCACGCGTCCGCTCATGCCTCCTAAATAATTCTTGTTCATGGAGAATCTC
ATGAGATGGGGAGGCTCAAAACAAAACTAATGACCGAATTAGCTGACTGC
GATACAAAAATTATCACCCCAAAGAACTGTCAGTCAGATAAAATGTATTT
TAACTCTGACAAAATGGCAAAAACTATTGGAAGGCTGGCTGAAAAAACGC
CATAATTTGGCGAAACTGTCACTGGCATACTTGTAAAGAAAGGTTTCACT
TACCAGATAATGGCTCCTGATGATCTTCGCATCTTCTCACAGCTATCGAC
AGCAAATATTACTCAGAGGATTACTGTCCCTTACTCAGGGGCCTTTGGTG
TGATAAAGTACCGGCTTGAGCAGATATACGAGAGTGTGGAGTCTTCTACA
GATGAGGAATCTGGGGTTCCTACTCTACGAGTGCACAATCGAGTGACTTT
GAAGCATGACTCAGAGAATCATATATCGATGCGTTGGACTTCAGATCCTA
TAAGTGACATGGTGTCATATTCTGTTGTACCATTGGTTCTAAACATCATT
CGGGACGTACCTAAGGTAGTTGTGGAATCCTAGGCCCATAAAACCTGAGT
GAATAAGGAGGGAAGAAAGGCGAAAAGGGTTTGCTGGCCCTGGCTGGCCC
CACTCTTTTGAACATGCAAAATTAAGAAGGCACCCGAAAAGGGGGGGTTA
CCCGTTCCTAGGGACATGGGCCCCCCTTGATAAGCATCACCGCAAAAGGT
CACAAAGCCTAATCGGCGCGCCCCTAGGAACCCAATTACAAACACCGTTT
TAAGCATAATTACGAAGGCGCGGCAAGAACCAACTACCACCCCCCCGGAA
ACGATCAAATGACGATCTCCCCCTCCACACACCTCTTTATTACGCCTTCT
ATCCTCATG
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