EY744240

Overview
NameEY744240
Unique NameEY744240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744240 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.909e-61
Identity = 126/207 (60.87%), Postives = 137/207 (66.18%), Query Frame = 2
Query:   11 GEMRNTRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQRVXXXXXXXXXXXXPITXXXXXXXXXXXXXW*QTMISNSDYTDFENFPKWLGVS 631
            G+MRN RYI+RKGPL+VY  EGAKLVKAFRNIPG              APGGHLGRF+VWTKSAFEKLD IYG FDK SEKK GYVLPR+KMVNADLARIINSDEVQSVV PI+   KRA                  YAKTARRMSLLAEA+RV            PI+             W QTMIS+SDYT+F+NF KWLGVS
Sbjct:  201 GKMRNRRYINRKGPLIVYGTEGAKLVKAFRNIPGIDIINVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLARIINSDEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKAKKEKLDKKRKPISKEEASTIKAAGKAWYQTMISDSDYTEFDNFTKWLGVS 407          
BLAST of EY744240 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 9.476e-61
Identity = 121/207 (58.45%), Postives = 137/207 (66.18%), Query Frame = 2
Query:   11 GEMRNTRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQRVXXXXXXXXXXXXPITXXXXXXXXXXXXXW*QTMISNSDYTDFENFPKWLGVS 631
            G+MRN RYISRKGPLVVY  EG+K+VKAFRN+PG              APGGHLGRF++WTKSAFEKL+ IYG F+K SEKKKGYVLPRAKMVNADLARIINSDE+QSVV PIK + KRA                  YAKTA+RMSLLAEAQRV             +T             W +TMIS+SDYT+F+NF KWLG S
Sbjct:  199 GKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMISDSDYTEFDNFTKWLGAS 405          
BLAST of EY744240 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 8.022e-60
Identity = 122/207 (58.94%), Postives = 135/207 (65.22%), Query Frame = 2
Query:   11 GEMRNTRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQRVXXXXXXXXXXXXPITXXXXXXXXXXXXXW*QTMISNSDYTDFENFPKWLGVS 631
            G+MRN RYISRKGPLVV+  EGAK+VKAFRN+PG              APGGHLGRF++WTKSAFEKL+ IYG F+K SEKKKGYVLPRAKMVNADLARIINSDEVQSVV PIK   KRA                  YAKTA+RMSLLAEA RV             +T             W QTMIS+SDYT+F+NF KWLG S
Sbjct:  200 GKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYTEFDNFTKWLGAS 406          
BLAST of EY744240 vs. ExPASy Swiss-Prot
Match: RL4_DICDI (60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.631e-28
Identity = 64/120 (53.33%), Postives = 79/120 (65.83%), Query Frame = 2
Query:    8 SGEMRNTRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKR 367
            +G+ RN RY  RKGPLVV S +   + +A RNIPG              APGGHLGRFI+WTKSAFE+LD  +G F K S +KKGY LPR  + NAD+ R++NSDE+Q+ VR  K  VKR
Sbjct:  192 AGKARNRRYKVRKGPLVVVSGK-TTVSQALRNIPGVEVANVSRLNLLKLAPGGHLGRFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRLVNSDEIQAAVRASKVVVKR 310          
BLAST of EY744240 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.131e-28
Identity = 67/155 (43.23%), Postives = 88/155 (56.77%), Query Frame = 2
Query:   11 GEMRNTRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQRV 475
            G+MRN R I R+GP V+Y+ E   LVKAFRNIPG              APGGH+GRF +WT+SAF KLD++YG + K ++ K  Y LP  KM N DL RI+ S E+Q  +R    +VKR                   YAKTARR ++L + + +
Sbjct:  198 GKMRNRRRIQRRGPCVIYN-ENNGLVKAFRNIPGITLLNVSKLNLLRLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 351          
BLAST of EY744240 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.747e-28
Identity = 65/155 (41.94%), Postives = 88/155 (56.77%), Query Frame = 2
Query:   11 GEMRNTRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQRV 475
            G+MRN R I R+GP V+Y+ E   ++KAFRNIPG              APGGH+GRF +WT+SAF KLD++YG + K ++ K  Y LP  KM N DL RI+ S E+Q  +R    +VKR                   YAKTARR ++L + + +
Sbjct:  193 GKMRNRRRIQRRGPCVIYN-ENNGIIKAFRNIPGITLLNVSKLNLLRLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 346          
BLAST of EY744240 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.057e-27
Identity = 62/153 (40.52%), Postives = 88/153 (57.52%), Query Frame = 2
Query:   11 GEMRNTRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQ 469
            G+MRN R I R+GP ++Y+ +   ++KAFRNIPG              APGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                   YAKT RR ++L +A+
Sbjct:  194 GKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
BLAST of EY744240 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5)

HSP 1 Score: 124.02 bits (310), Expect = 1.057e-27
Identity = 62/153 (40.52%), Postives = 88/153 (57.52%), Query Frame = 2
Query:   11 GEMRNTRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQ 469
            G+MRN R I R+GP ++Y+ +   ++KAFRNIPG              APGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                   YAKT RR ++L +A+
Sbjct:  194 GKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
BLAST of EY744240 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 1.804e-27
Identity = 62/153 (40.52%), Postives = 88/153 (57.52%), Query Frame = 2
Query:   11 GEMRNTRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQ 469
            G+MRN R I R+GP ++Y+ +   ++KAFRNIPG              APGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                   YAKT RR ++L +A+
Sbjct:  194 GKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
BLAST of EY744240 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 1.804e-27
Identity = 62/153 (40.52%), Postives = 88/153 (57.52%), Query Frame = 2
Query:   11 GEMRNTRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQ 469
            G+MRN R I R+GP ++Y+ +   ++KAFRNIPG              APGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                   YAKT RR ++L +A+
Sbjct:  194 GKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
The following BLAST results are available for this feature:
BLAST of EY744240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RL4_PRUAR1.909e-6160.8760S ribosomal protein L4 OS=Prunus armeniaca GN=RP... [more]
RL4A_ARATH9.476e-6158.4560S ribosomal protein L4-1 OS=Arabidopsis thaliana... [more]
RL4B_ARATH8.022e-6058.9460S ribosomal protein L4-2 OS=Arabidopsis thaliana... [more]
RL4_DICDI1.631e-2853.3360S ribosomal protein L4 OS=Dictyostelium discoide... [more]
RL4A_XENLA2.131e-2843.2360S ribosomal protein L4-A OS=Xenopus laevis GN=rp... [more]
RL4B_XENLA4.747e-2841.9460S ribosomal protein L4-B (Fragment) OS=Xenopus l... [more]
RL4_PONAB1.057e-2740.5260S ribosomal protein L4 OS=Pongo abelii GN=RPL4 P... [more]
RL4_HUMAN1.057e-2740.5260S ribosomal protein L4 OS=Homo sapiens GN=RPL4 P... [more]
RL4_RAT1.804e-2740.5260S ribosomal protein L4 OS=Rattus norvegicus GN=R... [more]
RL4_MOUSE1.804e-2740.5260S ribosomal protein L4 OS=Mus musculus GN=Rpl4 P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-D11-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744240 ID=EY744240; Name=EY744240; organism=Citrus sinensis; type=EST; length=857bp
CCACGCGTCCGGGGAAATGAGAAATACCCGCTACATTTCTCGCAAGGGCC
CGCTTGTTGTGTACTCAGCTGAGGGTGCTAAGCTTGTCAAGGCCTTTAGG
AACATTCCCGGTGTTGAGGTTGTGAATGTTGAGAGATTGAACTTGTTGAA
GCTGGCGCCGGGTGGCCATCTCGGGCGGTTTATTGTTTGGACTAAATCGG
CTTTTGAGAAGCTTGATGAGATTTATGGTAAGTTTGATAAGGGTTCCGAG
AAGAAGAAGGGTTATGTGCTGCCTCGTGCTAAGATGGTCAACGCTGATTT
GGCTAGGATTATTAACTCGGATGAGGTGCAGTCTGTTGTAAGGCCGATTA
AGACGGAGGTTAAGAGGGCTCCGATGAAGAAAAATCCTCTCAAGAACTTG
AATACTCTGTTGCGGTTGAACCCATATGCTAAGACTGCTCGGAGGATGTC
TCTTTTGGCTGAGGCACAACGGGTTAAAGCTAAGAAGGAGAAGCTCGACA
AGAAAAGGAAGCCCATCACTAAGGAGGAGGCCGCTGCGATCAAGGCTGCC
GGCAAGGCATGGTAACAGACGATGATCTCAAACAGTGATTATACTGATTT
TGAGAACTTCCCAAAATGGTTGGGTGTCTCACATAAATCTGATTGTTGGT
TTTTAAATTTTGTTTTTCAAAAAAATATTTTGTTTTTCTTTTCCGGGATT
TGGTTGTTGAACCCTAATCCCTTTTACCCCTTTTTAATCCATGGGAGAAA
AATTGGTGGGAAGGAAAAAAGAAGGGGATTTGGGAAAAGTGTGTAAACTT
TTTTTTTTCCCCCTTTCCGGCCATTTTTTTTGTCCCCTATCCCAAATAGG
GGGAAAA
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