EY744225

Overview
NameEY744225
Unique NameEY744225
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744225 vs. ExPASy Swiss-Prot
Match: RDR1_ORYSJ (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 PE=2 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 1.819e-62
Identity = 127/230 (55.22%), Postives = 150/230 (65.22%), Query Frame = 2
Query:   23 AMMGCLDETRTLNYGQVFVQISGAGYRQLHGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDILGIIANAHTVFADREPP*SKK*ALLSTNGKIFN*S-*LSKPGVPAEIPPHFYVKNIQISWKTRKNPLLNSKKVKGK 709
            AMMGCLDETRTL YGQVF++ +                        V G VV+AKNPCLHPGD+R+L AV+VP LHHM +CVVFPQ+G RPHPNECSGSDLDGDIYFV WD  LIPP+   PMDYTPA +  LDHDV IE+VEEYFTNYIVN+ LG+IANAH VFAD+E   ++    +    K+F+ +    K GVPA IPP  +VK      +        SK V GK
Sbjct:  344 AMMGCLDETRTLKYGQVFIRATSG--------------VNDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIEL-AKLFSIAVDFPKTGVPALIPPELHVKEYPDFMEKLDKVTYESKGVIGK 558          
BLAST of EY744225 vs. ExPASy Swiss-Prot
Match: RDR2_ORYSJ (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.349e-48
Identity = 100/233 (42.92%), Postives = 138/233 (59.23%), Query Frame = 2
Query:   26 MMGCLDETRTLNYGQVFVQISGAGYRQLHGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDILGIIANAHTVFADREP-----P*SKK*ALLSTNGKIFN*S*LSKPGVPAEIPPHFYVKNIQISWKTRKNPLLNSKKVKGK 709
            ++GCLDET  L YGQV+++I+     Q                 +V G V + KNPCLHPGD+RVL+A+  P L  MVDC+VFPQ+G RPHPNECSG DLDGD+YF+ WDD+LIP + D PMDYT  +   +DH V +E+++++F +Y++ND LG I+ AH + ADR P     P   + A L +    F     +K G PAE+P     +      +  + P+  S  V GK
Sbjct:  727 LIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVV-GKVAITKNPCLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDF-----AKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGK 953          
BLAST of EY744225 vs. ExPASy Swiss-Prot
Match: SHL2_ORYSJ (Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SHL2 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.470e-43
Identity = 83/168 (49.40%), Postives = 110/168 (65.48%), Query Frame = 2
Query:   26 MMGCLDETRTLNYGQVFVQISGAGYRQLHGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDILGIIANAHTVFAD 523
            +MGCLDE   L  GQ F++ +         +             ++ G VV+AKNPCLHPGDVR+L+AV+VP LHH+VDC+VFPQKG RPH NE SGSDLDGD+YFV WD++LIPP +    PMDY+P ++ QL   V   D+ ++F   ++++ LG I NAH V AD
Sbjct:  789 LMGCLDELGVLEQGQCFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHAD 956          
BLAST of EY744225 vs. ExPASy Swiss-Prot
Match: RDR1_SCHPO (RNA-dependent RNA polymerase 1 OS=Schizosaccharomyces pombe GN=rdr1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.842e-23
Identity = 66/177 (37.29%), Postives = 93/177 (52.54%), Query Frame = 2
Query:   26 MMGCLDETRTL---------NYGQVFVQISGAGYRQLHGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP--QQDPPMDYTPAQSMQ-LDHDVQIEDVEEYFTNYIVNDILGIIANAHTVFA 520
            ++G  DET TL         +  ++F+QI+                       ++ GL +VA+NP LHPGDVRV KAV    L H+ + +VFP  G R  P  CSG DLDGD Y V WD  L+P      P ++ +P +S+  L+    I+ V+E+F NYI  D LG+I+NA   +A
Sbjct:  798 LLGVADETGTLKGHYDDAVLSVPEIFIQITDTS------TSFGSYSTGKLKTRVIVGLCIVARNPSLHPGDVRVCKAVRCDELMHLKNVIVFPTTGDRSIPAMCSGGDLDGDEYTVIWDQRLLPKIVNYPPLLESSPKKSIDFLEGKPLIDSVKEFFVNYIKYDSLGLISNAWKAWA 968          
The following BLAST results are available for this feature:
BLAST of EY744225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RDR1_ORYSJ1.819e-6255.22Probable RNA-dependent RNA polymerase 1 OS=Oryza s... [more]
RDR2_ORYSJ4.349e-4842.92Probable RNA-dependent RNA polymerase 2 OS=Oryza s... [more]
SHL2_ORYSJ2.470e-4349.40Probable RNA-dependent RNA polymerase SHL2 OS=Oryz... [more]
RDR1_SCHPO4.842e-2337.29RNA-dependent RNA polymerase 1 OS=Schizosaccharomy... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C07-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744225 ID=EY744225; Name=EY744225; organism=Citrus sinensis; type=EST; length=883bp
CCACGCGTCCGCGGACGCGTGGGCTATGATGGGATGTCTAGATGAAACCA
GAACCTTAAATTACGGGCAGGTGTTTGTGCAAATTTCCGGTGCTGGATAT
AGGCAGTTGCATGGTGAATCTTCCTTATTTAGCAGCAGCAGATCACGGCA
GCGCTTTATTGTTCAGGGACTGGTGGTTGTTGCAAAAAACCCTTGTTTGC
ATCCAGGTGATGTACGTGTTTTAAAGGCTGTAAATGTGCCCGCTTTGCAT
CATATGGTGGACTGTGTTGTGTTTCCACAGAAAGGAATGAGACCGCATCC
AAATGAATGTTCTGGAAGTGATTTGGATGGAGATATCTACTTTGTCTGTT
GGGACGATGAATTGATTCCACCACAGCAAGATCCACCAATGGATTACACT
CCAGCACAAAGTATGCAGTTAGATCATGATGTTCAAATTGAGGACGTAGA
GGAGTACTTCACCAACTACATAGTGAATGACATTTTGGGGATCATTGCAA
ATGCTCACACTGTTTTTGCAGATCGGGAGCCCCCGTAAAGCAAGAAGTGA
GCCCTGCTTTCAACAAACGGAAAAATTTTCAATTGAAGTTGACTTTCAAA
ACCCGGTGTACCTGCTGAAATACCCCCACACTTTTATGTAAAAAATATCC
AAATTTCTTGGAAAACCCGGAAAAACCCCCTTTTGAATTCCAAAAAGGTG
AAAGGAAAACCTCTTCCGAGCGGGGAAAGGAATTTGCCCCCCAAACAAAA
CTGTATATGGTTTGTTAAAAAAGAAATGGGGAAGGGAAAATTTTTATGAA
CCCTGAAAAGGAAAGTTGAAGGGGTTTGAAGGAAACACCATCCAAAGAAT
CTCTTCTCTTCTCCAAAAGGGGAAATAATTTTT
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