EY744225
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY744225 vs. ExPASy Swiss-Prot
Match: RDR1_ORYSJ (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 PE=2 SV=2) HSP 1 Score: 239.58 bits (610), Expect = 1.819e-62 Identity = 127/230 (55.22%), Postives = 150/230 (65.22%), Query Frame = 2 Query: 23 AMMGCLDETRTLNYGQVFVQISGAGYRQLHGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDILGIIANAHTVFADREPP*SKK*ALLSTNGKIFN*S-*LSKPGVPAEIPPHFYVKNIQISWKTRKNPLLNSKKVKGK 709 AMMGCLDETRTL YGQVF++ + V G VV+AKNPCLHPGD+R+L AV+VP LHHM +CVVFPQ+G RPHPNECSGSDLDGDIYFV WD LIPP+ PMDYTPA + LDHDV IE+VEEYFTNYIVN+ LG+IANAH VFAD+E ++ + K+F+ + K GVPA IPP +VK + SK V GK Sbjct: 344 AMMGCLDETRTLKYGQVFIRATSG--------------VNDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIEL-AKLFSIAVDFPKTGVPALIPPELHVKEYPDFMEKLDKVTYESKGVIGK 558
BLAST of EY744225 vs. ExPASy Swiss-Prot
Match: RDR2_ORYSJ (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 PE=2 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 4.349e-48 Identity = 100/233 (42.92%), Postives = 138/233 (59.23%), Query Frame = 2 Query: 26 MMGCLDETRTLNYGQVFVQISGAGYRQLHGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDILGIIANAHTVFADREP-----P*SKK*ALLSTNGKIFN*S*LSKPGVPAEIPPHFYVKNIQISWKTRKNPLLNSKKVKGK 709 ++GCLDET L YGQV+++I+ Q +V G V + KNPCLHPGD+RVL+A+ P L MVDC+VFPQ+G RPHPNECSG DLDGD+YF+ WDD+LIP + D PMDYT + +DH V +E+++++F +Y++ND LG I+ AH + ADR P P + A L + F +K G PAE+P + + + P+ S V GK Sbjct: 727 LIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVV-GKVAITKNPCLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDF-----AKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGK 953
BLAST of EY744225 vs. ExPASy Swiss-Prot
Match: SHL2_ORYSJ (Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SHL2 PE=2 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 2.470e-43 Identity = 83/168 (49.40%), Postives = 110/168 (65.48%), Query Frame = 2 Query: 26 MMGCLDETRTLNYGQVFVQISGAGYRQLHGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDILGIIANAHTVFAD 523 +MGCLDE L GQ F++ + + ++ G VV+AKNPCLHPGDVR+L+AV+VP LHH+VDC+VFPQKG RPH NE SGSDLDGD+YFV WD++LIPP + PMDY+P ++ QL V D+ ++F ++++ LG I NAH V AD Sbjct: 789 LMGCLDELGVLEQGQCFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHAD 956
BLAST of EY744225 vs. ExPASy Swiss-Prot
Match: RDR1_SCHPO (RNA-dependent RNA polymerase 1 OS=Schizosaccharomyces pombe GN=rdr1 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 4.842e-23 Identity = 66/177 (37.29%), Postives = 93/177 (52.54%), Query Frame = 2 Query: 26 MMGCLDETRTL---------NYGQVFVQISGAGYRQLHGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP--QQDPPMDYTPAQSMQ-LDHDVQIEDVEEYFTNYIVNDILGIIANAHTVFA 520 ++G DET TL + ++F+QI+ ++ GL +VA+NP LHPGDVRV KAV L H+ + +VFP G R P CSG DLDGD Y V WD L+P P ++ +P +S+ L+ I+ V+E+F NYI D LG+I+NA +A Sbjct: 798 LLGVADETGTLKGHYDDAVLSVPEIFIQITDTS------TSFGSYSTGKLKTRVIVGLCIVARNPSLHPGDVRVCKAVRCDELMHLKNVIVFPTTGDRSIPAMCSGGDLDGDEYTVIWDQRLLPKIVNYPPLLESSPKKSIDFLEGKPLIDSVKEFFVNYIKYDSLGLISNAWKAWA 968 The following BLAST results are available for this feature:
BLAST of EY744225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY744225 ID=EY744225; Name=EY744225; organism=Citrus sinensis; type=EST; length=883bpback to top |