EY744215

Overview
NameEY744215
Unique NameEY744215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length967
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744215 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 384.03 bits (985), Expect = 6.848e-106
Identity = 205/266 (77.07%), Postives = 222/266 (83.46%), Query Frame = 1
Query:   49 MATYTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNHFPEKTKSK-SLSSWP*RGLPLSHSWVMGSNGEKFIYTGKDVS*GFLNAFLSRGKNWAMF*NVWYKKRKRKKD 843
            MA+YTPKNILITGAAGFIASHV NRLIR+YP+YKIVVLDKLDYCSNLKNL PSK S NFKFVKGDIASADLVN LLITE IDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDA+VGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPN FPEK   K  L +   + LP+      GSN   ++Y  +DV+  F    L +G+   ++ N+  KK +R  D
Sbjct:    1 MASYTPKNILITGAAGFIASHVANRLIRSYPDYKIVVLDKLDYCSNLKNLNPSKHSPNFKFVKGDIASADLVNHLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDALVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGQVLPIHGD---GSNVRSYLYC-EDVAEAF-EVVLHKGEVGHVY-NIGTKKERRVND 260          
BLAST of EY744215 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 381.333 bits (978), Expect = 4.439e-105
Identity = 197/239 (82.43%), Postives = 209/239 (87.45%), Query Frame = 1
Query:   49 MATYTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNHFPEKTKSK-SLSSWP*RGLPLSHSWVMGSNGEKFIYTGKDVS*GF 762
            MATY PKNILITGAAGFIASHV NRL+R+YP+YKIVVLDKLDYCSNLKNL PSK+S NFKFVKGDIASADLVN+LLITE IDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDA VGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPN FPEK   K  L +   + LP+      GSN   ++Y  +DV+  F
Sbjct:    1 MATYKPKNILITGAAGFIASHVANRLVRSYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEEIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDASVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMNGKPLPIHGD---GSNVRSYLYC-EDVAEAF 235          
BLAST of EY744215 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 376.326 bits (965), Expect = 1.428e-103
Identity = 201/264 (76.14%), Postives = 219/264 (82.95%), Query Frame = 1
Query:   55 TYTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNHFPEKTKSK-SLSSWP*RGLPLSHSWVMGSNGEKFIYTGKDVS*GFLNAFLSRGKNWAMF*NVWYKKRKRKKD 843
            TY PKNILITGAAGFIASHV NRLIRNYP+YKIVVLDKLDYCS+LKNL PS +S NFKFVKGDIAS DLVN+LLITE+IDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDA VGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPN FPEK   K  L +   + LP+      GSN   ++Y  +DV+  F    L +G+   ++ NV  K+ +R  D
Sbjct:    5 TYKPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSDLKNLDPSFSSPNFKFVKGDIASDDLVNYLLITENIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAAVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKMIPKFILLAMSGKPLPIHGD---GSNVRSYLYC-EDVAEAF-EVVLHKGEIGHVY-NVGTKRERRVID 262          
BLAST of EY744215 vs. ExPASy Swiss-Prot
Match: TGDS_MOUSE (dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 9.712e-52
Identity = 102/199 (51.26%), Postives = 134/199 (67.34%), Query Frame = 1
Query:   67 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNHFPEKTKSKSLS 663
            K +L+TG AGFIASHV   L+ +YP+Y IV LDKLDYC++LKNL P     N+KF++GDI  +  V  L   E ID ++HFAAQTHVD SF  +FEFT  N+YGTHVL+ A    G + +FI+VSTDEVYG + +       E+S   PTNPY+++KA AE  V +Y   Y  PV+ TR +NVYGP+ +PE+   K +S
Sbjct:   18 KRVLVTGGAGFIASHVIVSLVEDYPDYMIVNLDKLDYCASLKNLEPVSNKQNYKFIQGDICDSHFVKLLFEVEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVNAAYEAG-VEKFIYVSTDEVYGGSLDQEF---DESSPKQPTNPYASSKAAAECFVQSYWERYKFPVVITRSSNVYGPHQYPERVIPKFIS 212          
BLAST of EY744215 vs. ExPASy Swiss-Prot
Match: TGDS_HUMAN (dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.074e-50
Identity = 100/199 (50.25%), Postives = 133/199 (66.83%), Query Frame = 1
Query:   67 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNHFPEKTKSKSLS 663
            K +L+TG AGFIASH+   L+ +YP Y I+ LDKLDYC++LKNL       N+KF++GDI  +  V  L  TE ID ++HFAAQTHVD SF  +FEFT  N+YGTHVL+ A     ++ +FI+VSTDEVYG + +       E+S   PTNPY+++KA AE  V +Y   Y  PV+ TR +NVYGP+ +PEK   K +S
Sbjct:   18 KRVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAH-EARVEKFIYVSTDEVYGGSLDKEF---DESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPEKVIPKFIS 212          
BLAST of EY744215 vs. ExPASy Swiss-Prot
Match: TGDS_BOVIN (dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.074e-50
Identity = 100/199 (50.25%), Postives = 133/199 (66.83%), Query Frame = 1
Query:   67 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNHFPEKTKSKSLS 663
            K +L+TG AGFIASH+   L+ +YP Y I+ LDKLDYC++LKNL       N+KF++GDI  +  V  L  TE ID ++HFAAQTHVD SF  +FEFT  N+YGTHVL+ A     ++ +FI+VSTDEVYG + +       E+S   PTNPY+++KA AE  V +Y   Y  PV+ TR +NVYGP+ +PEK   K +S
Sbjct:   18 KRVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAH-EARVEKFIYVSTDEVYGGSLDKEF---DESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPEKVIPKFIS 212          
BLAST of EY744215 vs. ExPASy Swiss-Prot
Match: TGDS_DICDI (dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium discoideum GN=tgds PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.832e-50
Identity = 105/207 (50.72%), Postives = 137/207 (66.18%), Query Frame = 1
Query:   67 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYG--------ETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNHFPEKTKSKSLS 663
            + ILITG AGFI SH+   L + +   KI+VLDKLDYCSN+ NL       NFKF KG+I  ++L+  +   E ID ++H AA THVDNSF  S +FT+NNI GTH LLE CK   ++++FI+VSTDEVYG        + +      ++E S L PTNPYSA+KAGAE LV +Y +S+ LPVI TR NN+YGP  +PEK   K ++
Sbjct:   10 QKILITGGAGFIGSHLAIYLTKKFKNSKIIVLDKLDYCSNINNLGCVLKELNFKFYKGNILDSELLENIFEKEKIDIVIHLAAYTHVDNSFKQSIKFTENNILGTHYLLETCK-NYKLKKFIYVSTDEVYGSGLIEDNDDNNNSINQSSNEKSILNPTNPYSASKAGAEHLVQSYYKSFKLPVIITRANNIYGPKQYPEKIIPKFIN 215          
BLAST of EY744215 vs. ExPASy Swiss-Prot
Match: TGDS_MIMIV (Putative dTDP-D-glucose 4,6-dehydratase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R141 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.988e-48
Identity = 99/200 (49.50%), Postives = 131/200 (65.50%), Query Frame = 1
Query:   67 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNHFPEKTKSKSLSS 666
            KNIL+TG  GFI S+  N +   Y    I V D  DYC++++N+   + ++  K +KGDI + DL+   L    IDTI+HFAA +HVDNSF NS  FT+ N++GTHVLLE  ++ G+++ F H+STDEVYGE D      + E S L PTNPY+ATKAGAE +V +Y  SY LP+I  R NNVYG N +PEK   K + S
Sbjct:    2 KNILVTGGLGFIGSNFVNHISSKYDNVNIYVYDIGDYCASVENV---EWNNRTKLIKGDIRNFDLIMHTLTEHEIDTIVHFAAHSHVDNSFKNSLAFTETNVFGTHVLLECSRMYGKLKLFFHMSTDEVYGEIDTTDT--SREVSLLCPTNPYAATKAGAEHIVKSYFLSYKLPIIIARCNNVYGRNQYPEKLIPKFICS 196          
BLAST of EY744215 vs. ExPASy Swiss-Prot
Match: ACBB_ACTS5 (dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain 50/110) GN=acbB PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 2.743e-38
Identity = 88/195 (45.13%), Postives = 118/195 (60.51%), Query Frame = 1
Query:   73 ILITGAAGFIASHVCNRLIRN-----YPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNHFPEK 642
            IL+TG AGFI SH    LI        P  ++ V+DKL Y  NL+NL  + A   F FV+GDI    L+  L+     DT+ HFAA+THVD S   S  F  +N+ GT VLL+A  +   I RF+HVSTDEVYG  D  +    H    L P +PY+A+KAG+++L +AY +++G+ V+ TR +N YGP  FPEK
Sbjct:    3 ILVTGGAGFIGSHFVTSLISGDIATPQPVTQVTVVDKLGYGGNLRNLAEASADPRFSFVRGDICDEGLIEGLMARH--DTVAHFAAETHVDRSVVASGPFVASNLVGTQVLLDAA-LRHHIGRFLHVSTDEVYGSIDTGSWAEGHP---LAPNSPYAASKAGSDLLALAYHQTHGMDVVVTRCSNNYGPRQFPEK 191          
BLAST of EY744215 vs. ExPASy Swiss-Prot
Match: RFBB_SHIFL (dTDP-glucose 4,6-dehydratase OS=Shigella flexneri GN=rfbB PE=3 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.558e-33
Identity = 84/205 (40.98%), Postives = 113/205 (55.12%), Query Frame = 1
Query:   73 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK--------VTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLL-------PTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNHFPEK 642
            IL+TG AGFI S V   +I N  +  +V +DKL Y  NL++L     S  + F   DI  A  ++ +      D +MH AA++HVD S      F + NI GT+VLLEA +           +  RF H+STDEVYG+        N+EA  L        P++PYSA+KA ++ LV A+ R+YGLP I T  +N YGP HFPEK
Sbjct:    3 ILVTGGAGFIGSAVVRHIINNTQD-SVVNVDKLTYAGNLESLADVSDSERYAFEHADICDAVAMSRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALNDEKKKSFRFHHISTDEVYGDLPHPDEANNNEALPLFTETTAYAPSSPYSASKASSDHLVRAWKRTYGLPTIVTNCSNNYGPYHFPEK 206          
The following BLAST results are available for this feature:
BLAST of EY744215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RHM1_ARATH6.848e-10677.07Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
RHM3_ARATH4.439e-10582.43Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM2_ARATH1.428e-10376.14Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
TGDS_MOUSE9.712e-5251.26dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=... [more]
TGDS_HUMAN1.074e-5050.25dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=... [more]
TGDS_BOVIN1.074e-5050.25dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TG... [more]
TGDS_DICDI1.832e-5050.72dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium di... [more]
TGDS_MIMIV4.988e-4849.50Putative dTDP-D-glucose 4,6-dehydratase OS=Acantha... [more]
ACBB_ACTS52.743e-3845.13dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (... [more]
RFBB_SHIFL1.558e-3340.98dTDP-glucose 4,6-dehydratase OS=Shigella flexneri ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-B08-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744215 ID=EY744215; Name=EY744215; organism=Citrus sinensis; type=EST; length=967bp
CCACGCGTCCGATTTATGTACTTTTTATCATGTAGAAGTTGATTTGCAAT
GGCTACGTATACCCCGAAGAACATCCTCATCACTGGGGCTGCTGGGTTCA
TTGCTTCCCATGTATGCAACCGGCTGATTCGTAACTATCCCGAGTACAAA
ATTGTTGTGCTTGACAAGCTTGATTATTGTTCGAATCTGAAAAACCTAAT
ACCCTCCAAAGCATCCTCCAACTTTAAGTTTGTTAAGGGGGACATTGCCA
GTGCTGACCTTGTCAACTTTCTTCTCATCACTGAGTCCATTGACACTATT
ATGCACTTTGCTGCGCAAACTCATGTGGACAACTCTTTTGGAAATAGTTT
TGAGTTTACCAAGAACAATATCTATGGTACTCATGTCCTCCTTGAAGCCT
GCAAAGTGACTGGGCAGATCCGGAGGTTCATCCATGTCAGCACAGATGAG
GTCTATGGGGAGACTGACGAGGATGCTGTTGTGGGTAACCATGAAGCTTC
CCAACTCCTGCCAACAAATCCTTATTCTGCAACTAAAGCTGGAGCAGAAA
TGCTTGTTATGGCTTATGGTAGGTCATATGGGCTACCAGTGATTACAACC
CGTGGAAACAATGTTTATGGACCAAATCATTTCCCTGAAAAAACTAAATC
CAAAAGTTTATCCTCTTGGCCATGAAGGGGTTTGCCTCTTTCCCATTCAT
GGGTGATGGGTTCTAATGGGGAAAAGTTTATTTATACTGGGAAGGATGTT
TCCTGAGGCTTTTTGAATGCTTTCCTCTCAAGGGGAAAAAATTGGGCCAT
GTTTTAAAATGTTTGGTACAAAAAAAGGAAAAGGAAAAAGGATTGGATGG
GGGACAAAAAAAATTTTCAAAACTCTTTTCCAAGGGAACCCCCGGAAAAC
AACCATCCAATTTTTGTTAAAAAAAAAAGGGCCCTTTTTAAAAATATAAA
GAAGAGTTATTTTTTTT
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