EY659795

Overview
NameEY659795
Unique NameEY659795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2035 contig Csv1_Contig2035:15..586. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 8.695e-52
Identity = 106/126 (84.13%), Postives = 107/126 (84.92%), Query Frame = 2 
Query:  143 PKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQEF 520
            PKASKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKG+IGSASQEF
Sbjct:   14 PKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGEIGSASQEF 139
[Close]
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.093e-49
Identity = 102/126 (80.95%), Postives = 103/126 (81.75%), Query Frame = 2 
Query:  143 PKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQEF 520
            PKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNK  RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLP KVGK KGDIGSASQEF
Sbjct:   17 PKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142
[Close]
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 6.889e-49
Identity = 101/126 (80.16%), Postives = 103/126 (81.75%), Query Frame = 2 
Query:  143 PKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQEF 520
            PKA+KSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAP                  GNAARDNK  RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLP KVGK KGDIGSASQEF
Sbjct:   17 PKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142
[Close]
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.895e-47
Identity = 98/125 (78.40%), Postives = 102/125 (81.60%), Query Frame = 2 
Query:  146 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQEF 520
            K++KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNK NRIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ LLPKK GK KG+IGSASQEF
Sbjct:   14 KSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSGKDKGEIGSASQEF 138
[Close]
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.459e-46
Identity = 97/125 (77.60%), Postives = 100/125 (80.00%), Query Frame = 2 
Query:  146 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQEF 520
            K SKSVSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAP                  GNAARDNK NRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNIHQTLLPKK GK K DIGSASQEF
Sbjct:   14 KGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
[Close]
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.459e-46
Identity = 97/125 (77.60%), Postives = 100/125 (80.00%), Query Frame = 2 
Query:  146 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQEF 520
            K SKSVSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAP                  GNAARDNK NRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNIHQTLLPKK GK K DIGSASQEF
Sbjct:   14 KGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
[Close]
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.942e-43
Identity = 94/125 (75.20%), Postives = 99/125 (79.20%), Query Frame = 2 
Query:  146 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQEF 520
            K +K+VSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAP                  GNAARDNK NRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNI Q LLPKK G GKGDIGSASQEF
Sbjct:   14 KTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 137
[Close]
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.942e-43
Identity = 94/125 (75.20%), Postives = 99/125 (79.20%), Query Frame = 2 
Query:  146 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQEF 520
            K +K+VSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAP                  GNAARDNK NRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNI Q LLPKK G GKGDIGSASQEF
Sbjct:   14 KTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 137
[Close]
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2A3_ARATH (Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.949e-39
Identity = 84/114 (73.68%), Postives = 85/114 (74.56%), Query Frame = 2 
Query:  149 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGK 490
            A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNK  RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK G  K
Sbjct:   13 AKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSK 126
[Close]
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2A6_ARATH (Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.440e-38
Identity = 83/114 (72.81%), Postives = 85/114 (74.56%), Query Frame = 2 
Query:  149 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGK 490
            A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNK  RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK G  K
Sbjct:   13 AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGASK 126
The following BLAST results are available for this feature:
BLAST of EY659795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2AX_CICAR8.695e-5284.13Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1[more]
H2AXB_ARATH3.093e-4980.95Probable histone H2AXb OS=Arabidopsis thaliana GN=... [more]
H2AXA_ARATH6.889e-4980.16Probable histone H2AXa OS=Arabidopsis thaliana GN=... [more]
H2AX_PICAB2.895e-4778.40Histone H2AX OS=Picea abies PE=2 SV=1[more]
H2AXB_ORYSJ5.459e-4677.60Probable histone H2AXb OS=Oryza sativa subsp. japo... [more]
H2AXB_ORYSI5.459e-4677.60Probable histone H2AXb OS=Oryza sativa subsp. indi... [more]
H2AXA_ORYSJ1.942e-4375.20Probable histone H2AXa OS=Oryza sativa subsp. japo... [more]
H2AXA_ORYSI1.942e-4375.20Probable histone H2AXa OS=Oryza sativa subsp. indi... [more]
H2A3_ARATH4.949e-3973.68Probable histone H2A.3 OS=Arabidopsis thaliana GN=... [more]
H2A6_ARATH1.440e-3872.81Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-B08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659795 ID=EY659795; Name=EY659795; organism=Citrus sinensis; type=EST; length=572bp
TTCAGTAGCGGACGCGTCCGCACCGATCTTCCTAAAAAAGGGACTTTCAA
TCGCTTCAAACCAAACCGAAATCTAAGGTTAGGTTTTCTCTGTAATAAGA
ATGAGTTCAACTGGAGGGTCAACGAAGGGCGGCAGGGGTAAGCCGAAGGC
TTCGAAATCGGTCTCGCGGTCGCATAAGGCGGGCCTTCAGTTCCCGGTGG
GCAGGATCGCTAGGTTTTTGAAGGCCGGAAAGTACGCTGAGCGAGTCGGC
GCCGGAGCTCCTGTTTACCTCTCTGCCGTGCTTGAGTACCTCGCTGCTGA
GGTTCTGGAGCTTGCTGGCAATGCAGCAAGGGACAACAAGAACAACCGTA
TAGTGCCAAGGCATATTCAGCTTGCAGTTCGAAATGATGAGGAATTGAGC
AAGCTGCTGGGCTCGGTTACCATTGCCAATGGAGGTGTTTTACCCAACAT
TCACCAGACGCTGCTTCCCAAGAAGGTGGGGAAAGGAAAGGGTGACATTG
GTTCTGCTTCTCAAGAGTTCTAGACTCTGCTCTGTCAGAATTTTACTAGT
ATCTGTAAAAAAAAAAAAAAAA
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