EY659602
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RR1_SPIOL (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1) HSP 1 Score: 321.242 bits (822), Expect = 3.326e-87 Identity = 165/177 (93.22%), Postives = 172/177 (97.18%), Query Frame = 2 Query: 41 KFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLNSDGILGPLSPDLPADGLDLTDISPA 571 KFVEVDEEQSRLV+SNRKAMADSQAQLGIGSVV GTVQSLKPYGAFIDIGGINGLLHVSQISHDRV+DIATVLQPGDTLKVMILSHDR RGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTL+SDGILGPL+ DLPA+GLDL+ + PA Sbjct: 232 KFVEVDEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAEGLDLSVVPPA 408
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_SYNP6 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4) HSP 1 Score: 157.532 bits (397), Expect = 6.361e-38 Identity = 74/132 (56.06%), Postives = 106/132 (80.30%), Query Frame = 2 Query: 41 KFVEVDEEQSRLVLSNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQ 433 KF+EVDE+++RLVLS+R+A+ + + +L +G VV+G V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KVMI+ D RGR+SLSTK+LEP PGDM+RNP++V+EKAEEMA +R+++ Q Sbjct: 167 KFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEPGDMVRNPEVVYEKAEEMAAQYREKLKQ 298
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1A_SYNY3 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803) GN=rps1A PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 5.573e-34 Identity = 73/137 (53.28%), Postives = 105/137 (76.64%), Query Frame = 2 Query: 41 KFVEVDEEQSRLVLSNRKAMADSQAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQ-RIAQAEAM 445 KF+EVDEE++RLVLS+R+A+ + + L + VV+G+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KVMI+ D RGR+SLSTK+LEP PG M+++ LV E A+EMA+ FRQ R+A+A+ + Sbjct: 166 KFLEVDEERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIKVMIIDLDAERGRISLSTKQLEPEPGAMLKDRDLVNEMADEMAEIFRQKRLAEAQGI 302
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_SYNE7 (30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsA PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18 Identity = 46/129 (35.66%), Postives = 81/129 (62.79%), Query Frame = 2 Query: 44 FVEVDEEQSRLVLSNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRI 427 F+EV+ +LVLS R+A + ++ +G ++ G V LKP+G F+D+GG LL ++QIS VAD+ + + GD ++ ++++ D +GR+SLSTK LE PG+++ N + A + A+ R+++ Sbjct: 164 FLEVNRADKKLVLSERQAARTALVREIEVGQLINGKVTGLKPFGVFVDLGGATALLPINQISQKFVADVGAIFKIGDPIQALVVAIDNTKGRISLSTKVLENHPGEILENVAELQASAADRAERARKQL 292
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_LEULA (40S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18 Identity = 52/113 (46.02%), Postives = 74/113 (65.49%), Query Frame = 2 Query: 47 VEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGD 358 +E+D +RL+LS RKA+A + ++L +G VV GTV L +GAF+D+GG++GL+HVS+ISHDRV + A VL GD + V IL+ D +GR+SLS K + P D Sbjct: 196 IEIDPANARLILS-RKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWD 307 HSP 2 Score: 72.7886 bits (177), Expect = 2.061e-12 Identity = 44/109 (40.37%), Postives = 67/109 (61.47%), Query Frame = 2 Query: 41 KFVEVDEEQSRLVLS----NRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTP 352 K + +D E+ R+ LS R ++ Q+ GSV+ GTV+ +K +GAF++I GI GL+HVSQIS+ R+ + + VL+ GD ++V +L R+SLS K LE P Sbjct: 283 KILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKP 391
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1H_BACSU (30S ribosomal protein S1 homolog OS=Bacillus subtilis GN=ypfD PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18 Identity = 49/114 (42.98%), Postives = 72/114 (63.16%), Query Frame = 2 Query: 47 VEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMI 364 VE+D +++R++LS+R + QA L +GSV+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G +KV +LS DR R+SLS K P P + I Sbjct: 153 VELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIKDTLPGPWNQI 266 HSP 2 Score: 71.633 bits (174), Expect = 4.591e-12 Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = 2 Query: 41 KFVEVDEEQSRLVLSNRKAMADSQAQLGI----GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTP 352 K + VD + R+ LS + + Q+G G V+ GTVQ L +GAF++I G+ GL+H+SQIS+ + VL+ G T+KV +L + R+SLS ++LE TP Sbjct: 240 KVLSVDRDNERISLSIKDTLPGPWNQIGEKVKPGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRELEETP 348
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1H_BACC1 (30S ribosomal protein S1 homolog OS=Bacillus cereus (strain ATCC 10987) GN=BCE_1625 PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18 Identity = 50/116 (43.10%), Postives = 76/116 (65.52%), Query Frame = 2 Query: 41 KFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMI 364 K VE+D E++R++LS++ + DS+ + I G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV +LS D R+SLS K +P P + I Sbjct: 152 KIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENI 267
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1B_SYNY3 (30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC 6803) GN=rps1b PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.525e-15 Identity = 43/120 (35.83%), Postives = 73/120 (60.83%), Query Frame = 2 Query: 47 VEVDEEQSRLVLSNRKAM-ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEM 403 +E +++ ++LVL+ R+ A+S ++ G++ G V ++PYG F++I G+ GLLHVSQ+S RV + T+ G + V + D + R+SLST+ LE PG+++ EK +EM Sbjct: 166 LEANQDNNKLVLTQRRIQQAESMGKIAAGNIYEGKVAKIQPYGVFVEIEGVTGLLHVSQVSGTRVDSLNTLFAFGQAISVYVQEIDEYKNRISLSTRILETYPGELV-------EKFDEM 278
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RR1_PORPU (30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea GN=rps1 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14 Identity = 38/102 (37.25%), Postives = 69/102 (67.65%), Query Frame = 2 Query: 41 KFVEVDEEQSRLVLSNRKAM-ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLE 343 K + V+E+ + L+LS+R+A+ A + + L +G+++ G + + PYG FI G + GL+H+S+I+ +V I + + GDT+K +I+ D+ +GR+SLS K L+ Sbjct: 162 KLLNVEEKSNNLILSHRRALIAQASSNLIVGNIIEGVINQITPYGLFIKAGNLKGLVHISEINVKQVERIPSQFKIGDTIKAVIIHVDKKQGRLSLSMKHLK 263
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_STAAW (30S ribosomal protein S1 OS=Staphylococcus aureus (strain MW2) GN=rpsA PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14 Identity = 49/118 (41.53%), Postives = 68/118 (57.63%), Query Frame = 2 Query: 41 KFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIR 367 K E+D E +R++LS RKA+ + L G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G +KV I S DR R+SLS K PTP + I+ Sbjct: 157 KVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIK 273 The following BLAST results are available for this feature:
BLAST of EY659602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 41
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Sequences
The
following sequences are available for this feature:
EST sequence >EY659602 ID=EY659602; Name=EY659602; organism=Citrus sinensis; type=EST; length=709bpback to top |