EY659601
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RR1_SPIOL (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1) HSP 1 Score: 324.709 bits (831), Expect = 3.313e-88 Identity = 166/177 (93.79%), Postives = 173/177 (97.74%), Query Frame = 1 Query: 40 KFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLNSDGILGPLSPDLPADGLDLTDISPA 570 KFVEVDEEQSRLV+SNRKAMADSQAQLGIGSVV GTVQSLKPYGAFIDIGGINGLLHVSQISHDRV+DIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTL+SDGILGPL+ DLPA+GLDL+ + PA Sbjct: 232 KFVEVDEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAEGLDLSVVPPA 408
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_SYNP6 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4) HSP 1 Score: 160.999 bits (406), Expect = 6.335e-39 Identity = 75/132 (56.82%), Postives = 107/132 (81.06%), Query Frame = 1 Query: 40 KFVEVDEEQSRLVLSNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQ 432 KF+EVDE+++RLVLS+R+A+ + + +L +G VV+G V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KVMI+ D ERGR+SLSTK+LEP PGDM+RNP++V+EKAEEMA +R+++ Q Sbjct: 167 KFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEPGDMVRNPEVVYEKAEEMAAQYREKLKQ 298
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1A_SYNY3 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803) GN=rps1A PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 5.550e-35 Identity = 74/137 (54.01%), Postives = 106/137 (77.37%), Query Frame = 1 Query: 40 KFVEVDEEQSRLVLSNRKAMADSQAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQ-RIAQAEAM 444 KF+EVDEE++RLVLS+R+A+ + + L + VV+G+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KVMI+ D ERGR+SLSTK+LEP PG M+++ LV E A+EMA+ FRQ R+A+A+ + Sbjct: 166 KFLEVDEERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIKVMIIDLDAERGRISLSTKQLEPEPGAMLKDRDLVNEMADEMAEIFRQKRLAEAQGI 302
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_LEULA (40S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 1.467e-19 Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 1 Query: 46 VEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGD 357 +E+D +RL+LS RKA+A + ++L +G VV GTV L +GAF+D+GG++GL+HVS+ISHDRV + A VL GD + V IL+ D E+GR+SLS K + P D Sbjct: 196 IEIDPANARLILS-RKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWD 307 HSP 2 Score: 73.9442 bits (180), Expect = 1.018e-12 Identity = 44/109 (40.37%), Postives = 67/109 (61.47%), Query Frame = 1 Query: 40 KFVEVDEEQSRLVLS----NRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351 K + +D E+ R+ LS R ++ Q+ GSV+ GTV+ +K +GAF++I GI GL+HVSQIS+ R+ + + VL+ GD ++V +L R+SLS K LE P Sbjct: 283 KILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKP 391
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_SYNE7 (30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsA PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.282e-19 Identity = 46/129 (35.66%), Postives = 81/129 (62.79%), Query Frame = 1 Query: 43 FVEVDEEQSRLVLSNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRI 426 F+EV+ +LVLS R+A + ++ +G ++ G V LKP+G F+D+GG LL ++QIS VAD+ + + GD ++ ++++ D +GR+SLSTK LE PG+++ N + A + A+ R+++ Sbjct: 164 FLEVNRADKKLVLSERQAARTALVREIEVGQLINGKVTGLKPFGVFVDLGGATALLPINQISQKFVADVGAIFKIGDPIQALVVAIDNTKGRISLSTKVLENHPGEILENVAELQASAADRAERARKQL 292
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1H_BACSU (30S ribosomal protein S1 homolog OS=Bacillus subtilis GN=ypfD PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.622e-18 Identity = 49/114 (42.98%), Postives = 73/114 (64.04%), Query Frame = 1 Query: 46 VEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI 363 VE+D +++R++LS+R + QA L +GSV+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G +KV +LS DR+ R+SLS K P P + I Sbjct: 153 VELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIKDTLPGPWNQI 266 HSP 2 Score: 73.1738 bits (178), Expect = 1.737e-12 Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = 1 Query: 40 KFVEVDEEQSRLVLSNRKAMADSQAQLGI----GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351 K + VD + R+ LS + + Q+G G V+ GTVQ L +GAF++I G+ GL+H+SQIS+ + VL+ G T+KV +L + R+SLS ++LE TP Sbjct: 240 KVLSVDRDNERISLSIKDTLPGPWNQIGEKVKPGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRELEETP 348
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1H_BACC1 (30S ribosomal protein S1 homolog OS=Bacillus cereus (strain ATCC 10987) GN=BCE_1625 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.622e-18 Identity = 50/116 (43.10%), Postives = 77/116 (66.38%), Query Frame = 1 Query: 40 KFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI 363 K VE+D E++R++LS++ + DS+ + I G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV +LS D + R+SLS K +P P + I Sbjct: 152 KIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENI 267
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1B_SYNY3 (30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC 6803) GN=rps1b PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.842e-16 Identity = 43/120 (35.83%), Postives = 73/120 (60.83%), Query Frame = 1 Query: 46 VEVDEEQSRLVLSNRKAM-ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEM 402 +E +++ ++LVL+ R+ A+S ++ G++ G V ++PYG F++I G+ GLLHVSQ+S RV + T+ G + V + D + R+SLST+ LE PG+++ EK +EM Sbjct: 166 LEANQDNNKLVLTQRRIQQAESMGKIAAGNIYEGKVAKIQPYGVFVEIEGVTGLLHVSQVSGTRVDSLNTLFAFGQAISVYVQEIDEYKNRISLSTRILETYPGELV-------EKFDEM 278
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_STAAW (30S ribosomal protein S1 OS=Staphylococcus aureus (strain MW2) GN=rpsA PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15 Identity = 49/118 (41.53%), Postives = 69/118 (58.47%), Query Frame = 1 Query: 40 KFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366 K E+D E +R++LS RKA+ + L G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G +KV I S DR+ R+SLS K PTP + I+ Sbjct: 157 KVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIK 273
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_STAAS (30S ribosomal protein S1 OS=Staphylococcus aureus (strain MSSA476) GN=rpsA PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15 Identity = 49/118 (41.53%), Postives = 69/118 (58.47%), Query Frame = 1 Query: 40 KFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366 K E+D E +R++LS RKA+ + L G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G +KV I S DR+ R+SLS K PTP + I+ Sbjct: 157 KVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIK 273 The following BLAST results are available for this feature:
BLAST of EY659601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 43
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Sequences
The
following sequences are available for this feature:
EST sequence >EY659601 ID=EY659601; Name=EY659601; organism=Citrus sinensis; type=EST; length=752bpback to top |