EY659262
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY659262 vs. ExPASy Swiss-Prot
Match: PR40A_HUMAN (Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens GN=PRPF40A PE=1 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 1.639e-18 Identity = 53/133 (39.85%), Postives = 74/133 (55.64%), Query Frame = 3 Query: 54 PMSQMH-VPSNPAGGQLGVSISQSTSTPLQH---TNEQVAANTASTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELK 440 PM QM + S+ G + +SQ++ P + VAA TAS A++ W EH + DGR YYYN T+QSTW+KP +L TP E+ + WKE+ S G+ YYYN TK+S+W+ P EL+ Sbjct: 96 PMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNSMDVAAGTASG------------AKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELE 216
BLAST of EY659262 vs. ExPASy Swiss-Prot
Match: PR40A_MOUSE (Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.652e-18 Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 3 Query: 54 PMSQMH-VPSNPAGGQLGVSISQSTSTPLQH---TNEQVAANTASTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELK 440 PM QM + S+ G + +SQ++ P + VAA AS A++ W EH + DGR YYYN T+QSTW+KP +L TP E+ + WKE+ S G+ YYYN TK+S+W+ P EL+ Sbjct: 96 PMGQMPGMMSSVMSGMMMSHMSQASMQPALPPGVNSMDVAAGAASG------------AKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELE 216
BLAST of EY659262 vs. ExPASy Swiss-Prot
Match: PRP40_SCHPO (Pre-mRNA-processing protein prp40 OS=Schizosaccharomyces pombe GN=prp40 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.534e-16 Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 3 Query: 207 AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLA-----REQAERASTKGTQSEASPNLQT 512 ++ +DW E D R YYYN TR+S W+KP ELM E+ + WKE+ + DG+KY+YN T++S W IPDE K A +Q + S+K ++ P +Q+ Sbjct: 29 SKTVASDWHEVKTEDSRVYYYNSVTRKSVWEKPEELMNDFEKKLSKLAWKEYATADGKKYWYNVNTRESVWDIPDEYKAALVDEPEQQKKALSSKIKSNDNKPAVQS 135
BLAST of EY659262 vs. ExPASy Swiss-Prot
Match: YO61_CAEEL (WW domain-containing protein ZK1098.1 OS=Caenorhabditis elegans GN=ZK1098.1 PE=4 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 8.419e-15 Identity = 37/97 (38.14%), Postives = 59/97 (60.82%), Query Frame = 3 Query: 204 SAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAA----SDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGT 482 S+ ++DW HT G YY+N+ T+Q++W KP L TP+ER+ + WKEF S DG+ YYYN +TK+++W PD ++ + + + A+ T Sbjct: 76 SSPSVESDWSVHTNEKGTPYYHNRVTKQTSWIKPDVLKTPLERSTSGQPQQGQWKEFMSDDGKPYYYNTLTKKTQWVKPDGEEITKGEQKPAAKAAT 172
BLAST of EY659262 vs. ExPASy Swiss-Prot
Match: PR40B_MOUSE (Pre-mRNA-processing factor 40 homolog B OS=Mus musculus GN=Prpf40b PE=2 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 7.127e-14 Identity = 42/134 (31.34%), Postives = 64/134 (47.76%), Query Frame = 3 Query: 126 STPLQHTNEQVAANTASTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPNLQTSNSVP 527 + P+ A +S +A T P++ W EH A DGR YYYN +QS W+KP L + E + WKE+ S G+ YYYN +++S+W+ P +L ++ S Q++ LQ P Sbjct: 70 AVPVTAATAPGADTASSAVAGTGPPRAL------WSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSQESRWTRPKDLDDLEALVKQESAGKQQTQQLQTLQPQPPQP 197
BLAST of EY659262 vs. ExPASy Swiss-Prot
Match: PR40B_HUMAN (Pre-mRNA-processing factor 40 homolog B OS=Homo sapiens GN=PRPF40B PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 7.127e-14 Identity = 42/134 (31.34%), Postives = 63/134 (47.01%), Query Frame = 3 Query: 126 STPLQHTNEQVAANTASTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPNLQTSNSVP 527 + P+ A +S +A T P++ W EH A DGR YYYN +QS W+KP L + E + WKE+ S G+ YYYN +K+S+W+ P +L ++ + Q + LQ P Sbjct: 70 AVPVTAATAPGADTASSAVAGTGPPRAL------WSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKESRWTRPKDLDDLEVLVKQEAAGKQQQQLPQTLQPQPPQP 197
BLAST of EY659262 vs. ExPASy Swiss-Prot
Match: PRP40_YEAST (Pre-mRNA-processing protein PRP40 OS=Saccharomyces cerevisiae GN=PRP40 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.712e-12 Identity = 34/92 (36.96%), Postives = 51/92 (55.43%), Query Frame = 3 Query: 228 WIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPN 503 W E A GR YYYN T++STW+KP EL++ E + WK + DG+ YYYN T+++ W+IP K AE+ + ++ + N Sbjct: 4 WKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWTIPAFEKKVEPIAEQKHDTVSHAQVNGN 95
BLAST of EY659262 vs. ExPASy Swiss-Prot
Match: WBP4_RAT (WW domain-binding protein 4 OS=Rattus norvegicus GN=Wbp4 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.311e-11 Identity = 45/152 (29.61%), Postives = 69/152 (45.39%), Query Frame = 3 Query: 111 ISQSTSTPLQHTNEQVAANTASTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDEL------KLAREQAERASTKGTQSEASPNLQTSNSVPSSAVTAS 548 IS+ T +P+ +T Q + K E ++ W+E ADG YYY+ T S W+KP +++ A + W E S DG YYYN T +SKW PD+ L+ + +E+ S++S + S+ A AS Sbjct: 89 ISEPTISPVTNT-VQPTPTANQQKEKKKKKKKKEASKGRWVEGVTADGHCYYYDLVTGASQWEKPEGFQGNLKKTAAKAIWVEGLSEDGYTYYYNTETGESKWEKPDDFIPHGGDVLSSKDSEKLPDTLEDSKSSDSHSDSDDEQKKAGEAS 239
BLAST of EY659262 vs. ExPASy Swiss-Prot
Match: WBP4_MOUSE (WW domain-binding protein 4 OS=Mus musculus GN=Wbp4 PE=1 SV=3) HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11 Identity = 36/107 (33.64%), Postives = 51/107 (47.66%), Query Frame = 3 Query: 156 VAANTASTMASTFQP--------------KSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 434 ++ T S + ST QP K E ++ W+E ADG YYY+ T S W+KP +++ A + W E S DG YYYN T +SKW P++ Sbjct: 91 ISEPTVSPVISTVQPTPTSNQQKEKKKKKKKKEASKGGWVEGVTADGHCYYYDLITGASQWEKPKGFQGNLKKTAAKAVWVEGLSEDGYTYYYNTETGESKWEKPED 197 The following BLAST results are available for this feature:
BLAST of EY659262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY659262 ID=EY659262; Name=EY659262; organism=Citrus sinensis; type=EST; length=894bpback to top |