EY675209

Overview
NameEY675209
Unique NameEY675209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1047
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675209 vs. ExPASy Swiss-Prot
Match: ATX3H_ARATH (Ataxin-3 homolog OS=Arabidopsis thaliana GN=At3g54130 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 7.991e-71
Identity = 131/178 (73.60%), Postives = 148/178 (83.15%), Query Frame = 2
Query:   11 GDFSIHLLQKALEVWDLQVLPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKECPI-SSSDSSNGYGQWLSPEDAERITKSCNT----REGPKRIKLTQQHSDPFLSAEEADRLLEMEDEDLKAAIAASLL 529
            GDFSI +LQKALEVWDLQV+PLNCP AEPAQIDPELE+AFICHLHDHWFCIRKVNGEWYNFDSL AAP+HLSKFYLSA+LDSLKG GWSIFIV+GNFP+ECP+ SSS++SN +GQWLSPEDAERI K+ ++    R       + QQ  +  LS EE     EMED+DLKAAIAASLL
Sbjct:   80 GDFSIQVLQKALEVWDLQVIPLNCPDAEPAQIDPELESAFICHLHDHWFCIRKVNGEWYNFDSLLAAPQHLSKFYLSAFLDSLKGAGWSIFIVKGNFPQECPMSSSSEASNSFGQWLSPEDAERIRKNTSSGSSARNKRSNDNVNQQRRNQALSREEVQAFSEMEDDDLKAAIAASLL 257          
BLAST of EY675209 vs. ExPASy Swiss-Prot
Match: ATX3_ORYSJ (Putative ataxin-3 homolog OS=Oryza sativa subsp. japonica GN=Os01g0851400 PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 1.082e-59
Identity = 112/180 (62.22%), Postives = 137/180 (76.11%), Query Frame = 2
Query:   11 GDFSIHLLQKALEVWDLQVLPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKECPISSSDSSNGYGQWLSPEDAERITKSCNTREGPKRIKLTQQHSDPFLSAEEADRLLEM-------EDEDLKAAIAASLL 529
            GDFSI +LQKALEVWDLQV+PL+ P       DPELE AFICHL DHWFCIRKVNGEWYNF+SLY APEHLSKFYLSA++D+LKG GWSIF VRGNFPKECP+ +++ SNG+GQWL+P+DA RIT SCN      +++   Q +   L A++++ + EM       E+ DL AAIAASL+
Sbjct:   86 GDFSIQVLQKALEVWDLQVIPLDSPDVGSCLFDPELETAFICHLQDHWFCIRKVNGEWYNFNSLYPAPEHLSKFYLSAFIDTLKGSGWSIFAVRGNFPKECPM-ATEGSNGFGQWLTPDDARRITSSCN------QVQTPTQQAGVSLVADQSEEMSEMDMIAAQQEEADLNAAIAASLM 258          
BLAST of EY675209 vs. ExPASy Swiss-Prot
Match: ATX3_HUMAN (Ataxin-3 OS=Homo sapiens GN=ATXN3 PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 2.207e-20
Identity = 57/175 (32.57%), Postives = 97/175 (55.43%), Query Frame = 2
Query:    8 SGDFSIHLLQKALEVWDLQVLPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKECPISSSDSSNGYGQWLSPEDAERITKSCNTREGPKRIKLTQQHS---DPFLSAEEADRLLEMEDEDLKAAIAAS 523
            SG FSI ++  AL+VW L+++  N P  +  +IDP  E +FIC+  +HWF +RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P +C            Q L     +++ +     E   ++K  + H    +  L A +   +L+ ++EDL+ A+A S
Sbjct:   72 SGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP-DCEAD---------QLLQMIRVQQMHRPKLIGEELAQLKEQRVHKTDLERVLEANDGSGMLDEDEEDLQRALALS 236          
BLAST of EY675209 vs. ExPASy Swiss-Prot
Match: ATX3_CHICK (Ataxin-3 OS=Gallus gallus GN=ATXN3 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 8.385e-20
Identity = 55/191 (28.80%), Postives = 98/191 (51.31%), Query Frame = 2
Query:    8 SGDFSIHLLQKALEVWDLQVLPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP----------------KECPISSSDSSNGYGQWLSPEDAERITKSCNTREGPKRIKLTQQHSDPFLSAEEADRLLEMEDEDLKAAIAASLLG 532
            SG FSI ++  AL+VW L+++  N P  +   IDP  E +FIC+  +HWF +RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P                +   +   +++    Q L   D ++  +  +  +G   +   +++    L+    +  +E E+ DL+ AI  S+ G
Sbjct:   72 SGFFSIQVISNALKVWGLELILFNSPEYQRLGIDPINEKSFICNYKEHWFTVRKLGKQWFNLNSLLMGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQMIRVQQVQRPKLIGEETAQSRDQRLPRSDVDQAIEVSHPFDGTGMLDEDEENFQRALALSRQEIDMEDEEADLRRAIQLSMQG 262          
BLAST of EY675209 vs. ExPASy Swiss-Prot
Match: ATX3_RAT (Ataxin-3 OS=Rattus norvegicus GN=Atxn3 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.440e-19
Identity = 59/192 (30.73%), Postives = 96/192 (50.00%), Query Frame = 2
Query:    8 SGDFSIHLLQKALEVWDLQVLPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKECPISSSDSSNGYGQWLSPE-----------------DAERITKSCNTREGPKRIKLTQQHSDPFLSAEEADRLLEMEDEDLKAAIAASLLG 532
            SG FSI ++  AL+VW L+++  N P  +  +IDP  E +FIC+  +HWF +RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P +C            Q   P+                 D ER+ ++    +GP      +      L+    +  +E E+ DL+ AI  S+ G
Sbjct:   72 SGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP-DCEADQLLQMIKVQQMHRPKLIGEELAHLKEQSALKADLERVLEAA---DGPGMFDDDEDDLQRALAMSRQEIDMEDEEADLRRAIQLSMQG 259          
BLAST of EY675209 vs. ExPASy Swiss-Prot
Match: ATX3_MOUSE (Ataxin-3 OS=Mus musculus GN=Atxn3 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 4.161e-19
Identity = 53/172 (30.81%), Postives = 92/172 (53.49%), Query Frame = 2
Query:    8 SGDFSIHLLQKALEVWDLQVLPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKECPISSSDSSNGYGQWLSPEDAERITKSCNTREGPKRIKLTQQHSDPFLSAEEADRLLEMEDEDLKAAIAAS 523
            SG FSI ++  AL+VW L+++  N P  +  +IDP  E +FIC+  +HWF +RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P +C       ++   Q +  +   R           K     +   +  L A +   + + +++DL+ A+A S
Sbjct:   72 SGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP-DC------EADQLLQMIKVQQMHRPKLIGEELAHLKEQSALKADLERVLEAADGSGIFDEDEDDLQRALAIS 236          
BLAST of EY675209 vs. ExPASy Swiss-Prot
Match: ATX3L_HUMAN (Putative ataxin-3-like protein OS=Homo sapiens GN=ATXN3L PE=5 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.748e-17
Identity = 58/187 (31.02%), Postives = 91/187 (48.66%), Query Frame = 2
Query:    8 SGDFSIHLLQKALEVWDLQVLPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKEC---------PISSSDSSNGYGQWLSPEDAERITKSC--NTREGPKRIKLTQQHSDPFLSAEEADRL-LEMEDEDLKAAIAASLLG 532
            +G FSI ++  AL+ W L+++  N P  +   IDP  E +FIC+   HWF IRK    W+N +SL A PE +S   L+ +L  L+   +S+F+V+G+ P +C          +   D+    G+ L  +   R+ K+      E       + Q  + F  A E  R     EDE L++ I  S+ G
Sbjct:   72 TGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHWFTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLP-DCEADQLLQIISVEEMDTPKLNGKKLVKQKEHRVYKTVLEKVSEESDESGTSDQDEEDFQRALELSRQETNREDEHLRSTIELSMQG 257          
BLAST of EY675209 vs. ExPASy Swiss-Prot
Match: ATX3_CAEEL (Ataxin-3 homolog OS=Caenorhabditis elegans GN=atx-3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.385e-14
Identity = 37/100 (37.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:    8 SGDFSIHLLQKALEVWDLQVLPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPK 307
            SG FSI +L+KALE + L++  +  P     + +P    A+IC+L +HWF +RK   +W+  +S+   P+ LS  Y+S +L  +   G+SIF+V+G  P+
Sbjct:   70 SGYFSIQVLEKALETFSLKLTNIENPAMVDYKNNPLTARAYICNLREHWFVLRKFGNQWFELNSVNRGPKLLSDTYVSMFLHQVSSEGYSIFVVQGVLPR 169          
BLAST of EY675209 vs. ExPASy Swiss-Prot
Match: ATX3_CAEBR (Ataxin-3 homolog OS=Caenorhabditis briggsae GN=atx-3 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.602e-13
Identity = 33/99 (33.33%), Postives = 58/99 (58.59%), Query Frame = 2
Query:    8 SGDFSIHLLQKALEVWDLQVLPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP 304
            SG FSI +++KALE +DL+++ +  P     + +P    A++ +L +HWF +RK   +W+  +S+   P+ L+  Y+  YL       +SIF+V+G  P
Sbjct:   71 SGFFSIQVIEKALETFDLKLINMENPAMAEFKANPLTARAYVLNLREHWFVLRKFGNQWFELNSVKNGPKLLTDTYVKEYLHQFAAENYSIFVVQGILP 169          
The following BLAST results are available for this feature:
BLAST of EY675209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ATX3H_ARATH7.991e-7173.60Ataxin-3 homolog OS=Arabidopsis thaliana GN=At3g54... [more]
ATX3_ORYSJ1.082e-5962.22Putative ataxin-3 homolog OS=Oryza sativa subsp. j... [more]
ATX3_HUMAN2.207e-2032.57Ataxin-3 OS=Homo sapiens GN=ATXN3 PE=1 SV=3[more]
ATX3_CHICK8.385e-2028.80Ataxin-3 OS=Gallus gallus GN=ATXN3 PE=2 SV=1[more]
ATX3_RAT2.440e-1930.73Ataxin-3 OS=Rattus norvegicus GN=Atxn3 PE=2 SV=1[more]
ATX3_MOUSE4.161e-1930.81Ataxin-3 OS=Mus musculus GN=Atxn3 PE=1 SV=2[more]
ATX3L_HUMAN1.748e-1731.02Putative ataxin-3-like protein OS=Homo sapiens GN=... [more]
ATX3_CAEEL1.385e-1437.00Ataxin-3 homolog OS=Caenorhabditis elegans GN=atx-... [more]
ATX3_CAEBR7.602e-1333.33Ataxin-3 homolog OS=Caenorhabditis briggsae GN=atx... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-007-F04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675209 ID=EY675209; Name=EY675209; organism=Citrus sinensis; type=EST; length=1047bp
CCACGCGTCCGGCGATTTCAGTATCCACCTTCTGCAAAAGGCTTTAGAGG
TGTGGGATCTGCAAGTCCTTCCCCTTAACTGCCCAATTGCTGAACCTGCC
CAGATTGACCCTGAGCTAGAAAATGCGTTTATCTGTCATTTGCACGACCA
CTGGTTCTGTATCAGGAAAGTGAATGGAGAATGGTATAATTTTGACAGTC
TTTATGCAGCCCCAGAGCACCTCTCAAAGTTTTACCTGTCAGCCTATCTG
GATTCGCTAAAAGGCTTTGGCTGGAGTATTTTCATTGTGAGGGGAAACTT
CCCGAAAGAGTGCCCCATCTCATCCTCTGATTCTTCCAATGGTTATGGGC
AGTGGCTTTCTCCTGAAGATGCGGAGAGGATTACCAAATCATGCAACACA
AGAGAGGGCCCAAAGAGAATCAAATTGACTCAACAGCATTCTGATCCATT
TCTTTCTGCGGAGGAGGCAGATAGGCTTTTGGAGATGGAAGACGAGGACT
TGAAGGCTGCAATAGCTGCAAGTCTGTTGGGATTTCTTCCCCGCCGAACC
TACTGCAGAAGCTAACAGCACCACAGCAAGCAACCTGGAAAAATGGAAAA
AAAATTAACAAAAAAAAAAACCGGCACAGAAAAATAATTCGGGTTCCTAC
CATTTATCGGCCGGGTGAATTGAAGGTAAAAAATTGAATGCCAAAATAAA
AGGTGAAACTTGGAAAATGATCCCTTGGAAAAAAAGGATTTTTTTGGTTT
AAAAAAATTTCAATAATTGAATCTTTTAAAAAAAAAAAAAAAAAGGGGCG
GGCCCCCCCTAAAGGAGACCCCAGCTTTCTCTTCCCCCGTCGATGGGGAC
AACCAAAAACTTTTTTCTTAGAATGGCCCCCCAAAATTAACAATATCCCC
GGGGGGCCCGCACTTTTTTAAAACGCGGCGGTGGCCGGGGGGAAAAAACA
CCCGGGGGGGAGTCACCGCCCCACTTTTATAAGCCCCCCCCTTGCCCCAA
CCCTCCTCCTACCCCCCCCCTTTTCTCCCCCCGGGCGCGGGTGAGGG
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