EY675147

Overview
NameEY675147
Unique NameEY675147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1033
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.886e-56
Identity = 99/140 (70.71%), Postives = 119/140 (85.00%), Query Frame = 3
Query:   90 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKIS 509
            N S+   DPEI+DL+ KEK+RQ  G+ELIASENFTS AV+E++GS  TNKY+EG+PG RYYGGNE +D++ENLC  RAL+TF+L+P +WGVNVQPYSGS ANFAA+T +L+PHDRIMGLDLPSGGHLTHGY T   KKIS
Sbjct:   31 NRSVSESDPEIYDLMMKEKQRQFTGLELIASENFTSRAVMESIGSCFTNKYAEGLPGARYYGGNEVVDQLENLCIKRALETFNLNPEEWGVNVQPYSGSTANFAAFTGLLKPHDRIMGLDLPSGGHLTHGYQTD-KKKIS 169          

HSP 2 Score: 30.4166 bits (67), Expect = 1.886e-56
Identity = 16/59 (27.12%), Postives = 30/59 (50.85%), Query Frame = 2
Query:  497 EKNIGRTSIYFESLPYKVEFQILGILITISWEEKRRWKFLGQKLIILRGGGGFPRDGEY 673
            +K I  TSI+FES+PY+V          + + +      L +  +++ G   +PR+ +Y
Sbjct:  165 KKKISATSIFFESMPYQVNETGY-----VDYNKMEANAALFRPKLLIAGASAYPREWDY 218          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 207.223 bits (526), Expect = 2.085e-56
Identity = 100/141 (70.92%), Postives = 113/141 (80.14%), Query Frame = 3
Query:   87 GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKIS 509
            G  SL   DPE+ +L+++EK RQCRG+ELIASENF S A +EALGS L NKYSEG PG RYYGG E +DEIE LC+ RAL+ F LDP QWGVNVQPYSGSPAN A YTA+L+PHDRIMGLDLP GGHLTHG Y S  K+IS
Sbjct:   45 GQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHG-YMSDVKRIS 184          

HSP 2 Score: 28.1054 bits (61), Expect = 2.085e-56
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  500 KNIGRTSIYFESLPYKV 550
            K I  TSI+FES+PYK+
Sbjct:  181 KRISATSIFFESMPYKL 197          

HSP 3 Score: 24.6386 bits (52), Expect = 2.085e-56
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 1
Query:  556 PNTGYIDYNKLGGKKALEIFRPKV 627
            P TG IDYN+L       +FRP++
Sbjct:  199 PKTGLIDYNQLA--LTARLFRPRL 220          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.207e-55
Identity = 101/141 (71.63%), Postives = 113/141 (80.14%), Query Frame = 3
Query:   87 GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKIS 509
            G  SL   DPE+ +L+ +EK RQCRG+ELIASENF S A +EALGS L NKYSEG PG RYYGG E +DEIE LC+ RAL+ F LDP QWGVNVQPYSGSPAN AAYTA+L+PHDRIMGLDLP GGHLTHG Y S  K+IS
Sbjct:   45 GQESLSDSDPEMWELLRREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHG-YMSDVKRIS 184          

HSP 2 Score: 28.4906 bits (62), Expect = 1.207e-55
Identity = 12/20 (60.00%), Postives = 15/20 (75.00%), Query Frame = 2
Query:  500 KNIGRTSIYFESLPYKVEFQ 559
            K I  TSI+FES+PYK+  Q
Sbjct:  181 KRISATSIFFESMPYKLNPQ 200          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 2.051e-55
Identity = 104/168 (61.90%), Postives = 123/168 (73.21%), Query Frame = 3
Query:   18 PFFSFSVNPENGKKEKM---DPVNEW-GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKIS 509
            P    +V  ++GK  +    +    W G  SL   DPE+ +L+++EK RQCRG+ELIASENF   A +EALGS L NKYSEG PG RYYGG E +DEIE LC+ RAL+ F LDP QWGVNVQPYSGSPAN AAYTA+L+PHDRIMGLDLP GGHLTHG Y S  K++S
Sbjct:   18 PLVRTAVRAQHGKAAQTQTGEASRGWTGQESLSDTDPEMWELLQREKDRQCRGLELIASENFCIRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHG-YMSDVKRVS 184          

HSP 2 Score: 28.4906 bits (62), Expect = 2.051e-55
Identity = 19/58 (32.76%), Postives = 31/58 (53.45%), Query Frame = 2
Query:  500 KNIGRTSIYFESLPYKVEFQILGILITISWEEKRRWKFLGQKLIILRGGGGFPRDGEY 673
            K +  TSI+FES+PYK+  Q  G+   I +E+      L +  +I+ G   + R  +Y
Sbjct:  181 KRVSATSIFFESMPYKLNPQ-TGL---IDYEQLALTARLFRPRLIIAGTSAYARLIDY 234          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 1.086e-54
Identity = 97/137 (70.80%), Postives = 111/137 (81.02%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKIS 509
            L+  D E++ +I+KE  RQ  G+ELIASENF S AV+EALGS+L NKYSEG PG RYYGG EFIDE+E LC+ RALQ +HLDP  WGVNVQPYSGSPANFA YTA++EPH RIMGLDLP GGHLTHG+ T   KKIS
Sbjct:   20 LKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSSLNNKYSEGYPGQRYYGGTEFIDELEMLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTD-KKKIS 155          

HSP 2 Score: 29.6462 bits (65), Expect = 1.086e-54
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 2
Query:  497 EKNIGRTSIYFESLPYKV 550
            +K I  TSI+FES+PYKV
Sbjct:  151 KKKISATSIFFESMPYKV 168          

HSP 3 Score: 23.8682 bits (50), Expect = 1.086e-54
Identity = 10/24 (41.67%), Postives = 17/24 (70.83%), Query Frame = 1
Query:  556 PNTGYIDYNKLGGKKALEIFRPKV 627
            P TGYI+Y++L  ++   +F PK+
Sbjct:  170 PETGYINYDQL--EENASLFHPKL 191          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.054e-54
Identity = 96/137 (70.07%), Postives = 110/137 (80.29%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKIS 509
            L+  D E++++I+KE  RQ  G+EL ASENF S AV+EALGS L NKYSEG PG RYYGG EFIDE+E LC+ RALQ + LDP  WGVNVQPYSGSPANFA YTA++EPH RIMGLDLP GGHLTHG+ T G KKIS
Sbjct:   26 LKDSDVEVYNIIKKESNRQRVGLELFASENFASQAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMT-GKKKIS 161          

HSP 2 Score: 29.6462 bits (65), Expect = 4.054e-54
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 2
Query:  497 EKNIGRTSIYFESLPYKV 550
            +K I  TSI+FES+PYKV
Sbjct:  157 KKKISATSIFFESMPYKV 174          

HSP 3 Score: 24.2534 bits (51), Expect = 4.054e-54
Identity = 10/24 (41.67%), Postives = 18/24 (75.00%), Query Frame = 1
Query:  556 PNTGYIDYNKLGGKKALEIFRPKV 627
            P+TGYI+Y++L  ++   +F PK+
Sbjct:  176 PDTGYINYDQL--EENARLFHPKL 197          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 8.395e-54
Identity = 100/159 (62.89%), Postives = 120/159 (75.47%), Query Frame = 3
Query:   42 PENGKKEKMDPVNEWG---NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKIS 509
            P+    +K +P   W    NS LE +DPEI D+IE EK RQ +G+ELI SENFTS +V++A+GS +TNKYSEG PG RYYGGNE+ID  E LC+ RAL+ F LDP +WGVNVQP SGSP+NF  YTA+L+PHDRIM LDLP GGHL+HGY T   KKIS
Sbjct:   34 PDEAVYDKENPRVTWPKQLNSPLEVIDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTD-TKKIS 191          

HSP 2 Score: 25.409 bits (54), Expect = 8.395e-54
Identity = 15/58 (25.86%), Postives = 31/58 (53.45%), Query Frame = 2
Query:  500 KNIGRTSIYFESLPYKVEFQILGILITISWEEKRRWKFLGQKLIILRGGGGFPRDGEY 673
            K I   SI+FE++PY+++ +  G    I +++  +   L +  +I+ G   + R  +Y
Sbjct:  188 KKISAVSIFFETMPYRLD-ESTGY---IDYDQLEKSATLFRPKLIVAGASAYARLYDY 241          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 4.120e-53
Identity = 103/165 (62.42%), Postives = 120/165 (72.73%), Query Frame = 3
Query:   24 FSFSVNPENGKKEKMDPVNEWG---NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKIS 509
            +S S  P     EK  P   W    N+ LE VDPEI D+IE EK RQ +G+ELI SENFTS +V++A+GS +TNKYSEG PG RYYGGNE+ID  E LC+ RAL+ F LDP +WGVNVQP SGSPANF  YTA+L+ HDRIM LDLP GGHL+HGY T   KKIS
Sbjct:   28 YSMSSLPSEAVYEKERPGVTWPKQLNAPLEVVDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHLSHGYQTD-TKKIS 191          

HSP 2 Score: 24.6386 bits (52), Expect = 4.120e-53
Identity = 15/58 (25.86%), Postives = 30/58 (51.72%), Query Frame = 2
Query:  500 KNIGRTSIYFESLPYKVEFQILGILITISWEEKRRWKFLGQKLIILRGGGGFPRDGEY 673
            K I   SI+FE++PY++  +  G    I +++  +   L +  +I+ G   + R  +Y
Sbjct:  188 KKISAVSIFFETMPYRLN-ESTGY---IDYDQLEKSATLFRPKLIVAGASAYARLYDY 241          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 9.126e-53
Identity = 96/140 (68.57%), Postives = 113/140 (80.71%), Query Frame = 3
Query:   90 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKIS 509
            N+ LE VDPEI D+IE EK RQ +G+ELI SENFTS +V++A+GS +TNKYSEG PG RYYGGNE+ID  E LC+ RAL+ F LDP +WGVNVQP SGSPANF  YTA+L+PH+RIM LDLP GGHL+HGY T   KKIS
Sbjct:   53 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTD-TKKIS 191          

HSP 2 Score: 25.409 bits (54), Expect = 9.126e-53
Identity = 15/58 (25.86%), Postives = 31/58 (53.45%), Query Frame = 2
Query:  500 KNIGRTSIYFESLPYKVEFQILGILITISWEEKRRWKFLGQKLIILRGGGGFPRDGEY 673
            K I   SI+FE++PY+++ +  G    I +++  +   L +  +I+ G   + R  +Y
Sbjct:  188 KKISAVSIFFETMPYRLD-ESTGY---IDYDQLEKSATLFRPKLIVAGASAYARLYDY 241          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 9.600e-53
Identity = 101/146 (69.18%), Postives = 118/146 (80.82%), Query Frame = 3
Query:   87 GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISGELRF 524
            GN+ L+ VD EI +L+ +EK RQ +G+ELIASENFTS AV+EALGS  TNKY+EG PG+RYYGG E +DE+E LC+ RAL+ F LD ++WGVNVQPYSGSPANFA YTA+L PHDRIMGLDLPSGGHLTHGY T   KKIS    F
Sbjct:    6 GNTPLKEVDNEIFELMNREKDRQFKGLELIASENFTSRAVMEALGSHFTNKYAEGYPGSRYYGGTEVVDELETLCQKRALKAFRLDESKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGYQTD-KKKISASSIF 150          
The following BLAST results are available for this feature:
BLAST of EY675147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC2_DICDI1.886e-5670.71Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYM_HUMAN2.085e-5670.92Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_BOVIN1.207e-5571.63Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_RABIT2.051e-5561.90Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_MOUSE1.086e-5470.80Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]
GLYC_PONAB4.054e-5470.07Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYM_PEA8.395e-5462.89Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_FLAPR4.120e-5362.42Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYM_SOLTU9.126e-5368.57Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC1_DICDI9.600e-5369.18Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-F12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675147 ID=EY675147; Name=EY675147; organism=Citrus sinensis; type=EST; length=1033bp
CCACGCGTCCGCATTTTCCCTTTTTTTCGTTTTCAGTGAATCCAGAAAAC
GGAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATCTCT
TGAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGCGCC
GACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCCTTC
GCCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGAGGG
AATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGATCG
AGAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCCACC
CAGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTTCGC
CGCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGGACT
TGCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCTGGCGGGAAA
AAAATATCGGGCGAACTTCGATTTACTTCGAGAGCTTGCCGTACAAGGTG
GAATTCCAAATACTGGGTATATTGATTACAATAAGTTGGGAGGAAAAAAG
GCGTTGGAAATTTTTAGGCCAAAAGTTGATTATTTTGCGGGGGGGAGGGG
GTTTCCCAAGGGATGGGGAATATGGCTAATTTCAAAGCCGTTGGCTAATA
AAAGGGGGGGGCCCCTTTTGCCCGAGGGAAAAGGGGGCAAAAAGACAAGG
GGCTTGGGTGGGGGCCCAAGGAAGACAGGAAAACCCCTTTTGAATAAAAG
GTACATTAAGATCACAACCCCCGATACTCTCAAAAAAACATGGGGGGGGG
GCCCATCAGGGGCGAGGGGAGGAGTATTTTTTCACCCAGGAAAGGGGGGC
CAAAAAACACAAAGGACCAAAAGAGGGGGAGAGAAACACAAAAAGAGGGG
GGGGGGGAGAATCATAAAAAGGTGTCTGTAAAACATAAAACAGACTAAGT
ACTAGCATGAGCGTTTGAATGATGAGAATACTA
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