DY306104

Overview
NameDY306104
Unique NameDY306104
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length966
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306104 vs. ExPASy Swiss-Prot
Match: RPG1_ARATH (Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.319e-32
Identity = 72/202 (35.64%), Postives = 119/202 (58.91%), Query Frame = 1
Query:    1 PAKTFWHIVQRRSTEEFESIPYISKLLNAYFWVWYG--IVKPNSVLVASVNGFGAALEIIYVIIFLIFAPPMMRGRTAVLAGVC-DVVFPGTTVLVTQIFFDRD-VQIKVSGFLSLCFSMVAYSSPLSAMKTVVVTKSVEYMPFLLSFILFINGAVWTVYAVLTK-DLFIGIPNGSGFIPGAAQLVLYVMYWKPKSSSKKIQ 591
            PAKTFW I +++S EEF  +PY++ ++N   WV+YG  +V  +S+LV+++NG G  +E+ YV ++L++       R  +L  +  +V+     +L+T      D V+    G +   F++  Y +P  A+  VV TKSVEYMPFLLS + F+N  +WT Y+++ K D ++   NG G     +QL++Y MY+K     K ++
Sbjct:   26 PAKTFWRIFKKKSVEEFSYVPYVATVMNCMLWVFYGLPVVHKDSILVSTINGVGLVIELFYVGVYLMYCGHKKNHRRNILGFLALEVILVVAIILITLFALKGDFVKQTFVGVICDVFNIAMYGAPSLAIIKVVKTKSVEYMPFLLSLVCFVNAGIWTTYSLIFKIDYYVLASNGIGTFLALSQLIVYFMYYKSTPKEKTVK 227          
BLAST of DY306104 vs. ExPASy Swiss-Prot
Match: R1AP1_DROPS (RAG1-activating protein 1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=slv PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.767e-17
Identity = 54/185 (29.19%), Postives = 93/185 (50.27%), Query Frame = 1
Query:   25 VQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPPMMRGRTAVLAGVCDVVFPGTTVLVTQIFFDRDVQIKVSGFLSLCFSMVAYSSPLSAMKTVVVTKSVEYMPFLLSFILFINGAVWTVYAVLTKDLFIGIPNGSGFIPGAAQLVLYVMYWKPKSSS 579
            +Q++ST +   +P+I   L+  FW+ YG++     +V  VN  G+ L +IY +I+ +F     R      A V  V+     V   ++   RD  I+++G      ++  +++PL+ +  V+  K+ E +P  L    F+    W +Y +L  D FI IPN  G +    QL L+V+Y  P+S S
Sbjct:   32 IQKKSTGDSSGVPFICGFLSCSFWLRYGVLTEEQSIVL-VNIIGSTLFLIYTLIYYVFTVNK-RAFVRQFAFVLAVLIAVVVVYTNRLADQRDEMIRITGIFCCIVTVCFFAAPLATLLHVIRAKNSESLPLPLIATSFLVSLQWLIYGILISDSFIQIPNFLGCLLSMLQLSLFVVY-PPRSYS 213          
BLAST of DY306104 vs. ExPASy Swiss-Prot
Match: R1AP1_DROME (RAG1-activating protein 1 homolog OS=Drosophila melanogaster GN=slv PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.034e-16
Identity = 55/186 (29.57%), Postives = 94/186 (50.54%), Query Frame = 1
Query:   25 VQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPPMMRGRTAVLA-GVCDVVFPGTTVLVTQIFFDRDVQIKVSGFLSLCFSMVAYSSPLSAMKTVVVTKSVEYMPFLLSFILFINGAVWTVYAVLTKDLFIGIPNGSGFIPGAAQLVLYVMYWKPKSSS 579
            +Q++ST +   +P+I   L+  FW+ YG++  N   +  VN  G+ L ++Y +I+ +F    +  R  V   G    V     V   ++   RD  I V+G +    ++  +++PL+++  V+  K+ E +P  L    F+    W +Y +L  D FI IPN  G I    QL L+V+Y  P+S S
Sbjct:   33 IQKKSTGDSSGVPFICGFLSCSFWLRYGVLT-NEQSIVLVNIIGSTLFLVYTLIYYVFT---VNKRACVKQFGFVLTVLVVVIVYTNRLEDQRDRMIHVTGIVCCIVTVCFFAAPLASLLHVIRAKNSESLPLPLIATSFVVSLQWLIYGILISDSFIQIPNFLGCILSLLQLGLFVLY-PPRSYS 213          
BLAST of DY306104 vs. ExPASy Swiss-Prot
Match: R1AP1_MOUSE (RAG1-activating protein 1 OS=Mus musculus GN=Rag1ap1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.263e-15
Identity = 50/195 (25.64%), Postives = 100/195 (51.28%), Query Frame = 1
Query:   19 HIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPPM--MRGRTAVLAGVCDVVFPGTTVLVTQIFFDRDVQIKVSGFLSLCFSMVAYSSPLSAMKTVVVTKSVEYMPFLLSFILFINGAVWTVYAVLTKDLFIGIPNGSGFIPGAAQLVLYVMYWKPKSSSKKIQMM 597
            H+ + RS +  + +P+++  +N   W+ YG++K +  L+  VN  GA L+ +Y++ +L ++P    +  +TA L  V  + +    +LV     D + +++  G     F++  Y SPL+ +  +V TKS + + F L+       A W++Y    +D +I +PN  G +    +L L+  Y  P    +K +++
Sbjct:   32 HMQRTRSVDNIQFLPFLTTDVNNLSWLSYGVLKGDGTLII-VNSVGAVLQTLYILAYLHYSPQKHGVLLQTATLLAVLLLGYGYFWLLVP----DLEARLQQLGLFCSVFTISMYLSPLADLAKIVQTKSTQRLSFSLTIATLFCSASWSIYGFRLRDPYITVPNLPGILTSLIRLGLFCKY--PPEQDRKYRLL 219          
BLAST of DY306104 vs. ExPASy Swiss-Prot
Match: R1AP1_XENLA (RAG1-activating protein 1 homolog OS=Xenopus laevis GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.712e-14
Identity = 46/179 (25.70%), Postives = 92/179 (51.40%), Query Frame = 1
Query:   22 IVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPPMMRGRTAVLAGVCDVVFPGTTVLVTQIFFDRDVQIKVSGFLSLCFSMVAYSSPLSAMKTVVVTKSVEYMPFLLSFILFINGAVWTVYAVLTKDLFIGIPNGSGFIPGAAQLVLYVMY 558
            +V +RS E  + +P+++  LN   W +YG +K +  L+  VN  GA+L+ +Y+  +L+++P      + VL  +  V+  G       I  D + ++   G     F++  Y SPL+ +  ++ +KS + + F L+   F+  + W +Y ++  DL+I +PN  G +    +  L+  +
Sbjct:   29 MVAQRSVENIQYLPFLTTDLNNLGWFYYGYLKGDGTLMI-VNVIGASLQSLYMGAYLLYSPERRYVGSQVLVSL-GVLLLGYCYFTLWIL-DLNSRLNQLGLFCSVFTISMYLSPLADLAQIIRSKSTKCLSFPLTVATFLTSSSWVLYGLVQSDLYITVPNFPGIVTSLVRFWLFSQF 204          
BLAST of DY306104 vs. ExPASy Swiss-Prot
Match: R1AP1_HUMAN (RAG1-activating protein 1 OS=Homo sapiens GN=RAG1AP1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.054e-13
Identity = 46/184 (25.00%), Postives = 95/184 (51.63%), Query Frame = 1
Query:   19 HIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPP--MMRGRTAVLAGVCDVVFPGTTVLVTQIFFDRDVQIKVSGFLSLCFSMVAYSSPLSAMKTVVVTKSVEYMPFLLSFILFINGAVWTVYAVLTKDLFIGIPNGSGFIPGAAQLVLYVMYWK 564
            H+   RS +  + +P+++  +N   W+ YG +K + +L+  VN  GAAL+ +Y++ +L + P   ++  +TA L GV  + +    +LV     + + +++  G     F++  Y SPL+ +  V+ TKS + + + L+    +  A W +Y    +D +I + N  G +      + + ++WK
Sbjct:   32 HMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGDGILIV-VNTVGAALQTLYILAYLHYCPRKRVVLLQTATLLGVLLLGYGYFWLLVP----NPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIV---TSFIRFWLFWK 207          
BLAST of DY306104 vs. ExPASy Swiss-Prot
Match: R1AP1_CAEEL (RAG1-activating protein 1 homolog OS=Caenorhabditis elegans GN=K02D7.5 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.989e-13
Identity = 41/170 (24.12%), Postives = 82/170 (48.24%), Query Frame = 1
Query:   46 EFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPPMMRGRTAVLAGVCDVVFPGTTVLVTQIFFDRDVQIKVSGFLSLCFSMVAYSSPLSAMKTVVVTKSVEYMPFLLSFILFINGAVWTVYAVLTKDLFIGIPNGSGFIPGAAQLVLYVM 555
            +   +P++  +L   FW+ YG++K + V++  VN  G A    Y + FLI++ P            C ++   +T+    ++      +   G + + F+++ + +PL+ +  V+  + V  +P  +    F+  + W +Y  L  D++I IPNG G      QL L+V+
Sbjct:   39 DISGVPFLMGVLGGSFWLRYGLLKMDYVMII-VNVVGVACMAFYCVFFLIYSLPKK-------TFTCQLILVTSTIGGMVLWIALKPNLDYLGVICMTFNIMNFGAPLAGLGVVLKNREVSTLPLPMCVANFLVSSQWCLYGNLVSDIYIIIPNGIGMFLAIVQLALFVV 200          
BLAST of DY306104 vs. ExPASy Swiss-Prot
Match: R1AP1_DICDI (RAG1-activating protein 1 homolog OS=Dictyostelium discoideum GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.210e-13
Identity = 48/188 (25.53%), Postives = 89/188 (47.34%), Query Frame = 1
Query:    1 PAKTFWHIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPPMMRGRTAVLAGVCDVVFPGTTVLVT--QIFFDRDVQIKVSGFLSLCFSMVAYSSPLSAMKTVVVTKSVEYMPFLLSFILFINGAVWTVYAVLTKDLFIGIPNGSGFIPGAAQLVLYVMY 558
            P KT   I+++++      + +IS +LN + W+ Y ++  N+ ++  VN  G    I YV  +      +   R  +   +   V   T + ++      D D +I   GFLS    ++ ++SPL  M  V+ +K+ E M   ++ +  + G  WT++ +L  D++I +PN    I    QL L  +Y
Sbjct:   28 PLKTIRLIIEKKNVGTVAGLQFISSVLNCFLWISYALLTSNTTMLF-VNSIGMMFSIYYVFNYWKNINQVRASRDYLKKVMIACVLAITIISISYYNTVDDLDTRISRLGFLSSVVCVLMFASPLEKMAIVIQSKNSEGMIINVAILSLLCGLSWTIFGLLLNDIYIYLPNILASILSFVQLTLIKLY 214          
BLAST of DY306104 vs. ExPASy Swiss-Prot
Match: R1AP1_DANRE (RAG1-activating protein 1 homolog OS=Danio rerio GN=rag1ap1 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.804e-13
Identity = 45/176 (25.57%), Postives = 84/176 (47.73%), Query Frame = 1
Query:   34 RSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPPMMRGRTAVLAGVCDVVFPGTTVLVTQIFFDRDVQIKVSGFLSLCFSMVAYSSPLSAMKTVVVTKSVEYMPFLLSFILFINGAVWTVYAVLTKDLFIGIPNGSGFIPGAAQLVLYVMYW 561
            +S +  + +P+++  LN   W++YG++K +  ++  VN  GA L+ +Y+  +  +     R  T  L  V   V     V  + +    + Q+   G     F++  Y SPL+ +  ++ TKSVE + F L+   F     WT+Y +   D +I +PN  G       L+ + ++W
Sbjct:   33 QSADNVQFLPFLTTCLNNLGWLYYGLLKGDGTVIF-VNIIGAFLQTVYIATYCHYTKEKRRVYTQTLLMVS--VLCVAWVYFSLVISPGEAQLSQLGLTCSVFTISMYLSPLADLLDIMRTKSVERLSFSLTVATFFTSTSWTLYGLQLGDYYIMVPNTPGIF---TSLIRFFLFW 202          
BLAST of DY306104 vs. ExPASy Swiss-Prot
Match: R1AP1_CAEBR (RAG1-activating protein 1 homolog OS=Caenorhabditis briggsae GN=CBG13500 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.887e-13
Identity = 39/184 (21.20%), Postives = 88/184 (47.83%), Query Frame = 1
Query:   46 EFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPPMMRGRTAVLAGVCDVVFPGTTVLVTQIFFDRDVQIKVSGFLSLCFSMVAYSSPLSAMKTVVVTKSVEYMPFLLSFILFINGAVWTVYAVLTKDLFIGIPNGSGFIPGAAQLVLYVMYWKPKSSSKKIQMM 597
            +   +P++  +L   FW+ YG++K +  ++  VN  G     +Y I FLI++ P            C ++   +T+    ++      +   G + + F+++ + +PL+ +  V+  + V  +P  +    F+  + W +Y  L +D++I IPNG G      QL L+++  + ++    ++ +
Sbjct:   39 DISGVPFLMGVLGGSFWLRYGLLKMDYTMII-VNVVGVFCMAVYCIFFLIYSLPKK-------TFTCQLILVTSTITGMVVWIAFKPNLDYLGIICMTFNIMNFGAPLAGLGVVLRNREVSTLPLPMCVANFLVSSQWCLYGNLVQDIYIIIPNGIGMFLAIVQLSLFIVLPRRENEKSPLEQL 214          
The following BLAST results are available for this feature:
BLAST of DY306104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RPG1_ARATH1.319e-3235.64Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis tha... [more]
R1AP1_DROPS7.767e-1729.19RAG1-activating protein 1 homolog OS=Drosophila ps... [more]
R1AP1_DROME5.034e-1629.57RAG1-activating protein 1 homolog OS=Drosophila me... [more]
R1AP1_MOUSE3.263e-1525.64RAG1-activating protein 1 OS=Mus musculus GN=Rag1a... [more]
R1AP1_XENLA4.712e-1425.70RAG1-activating protein 1 homolog OS=Xenopus laevi... [more]
R1AP1_HUMAN3.054e-1325.00RAG1-activating protein 1 OS=Homo sapiens GN=RAG1A... [more]
R1AP1_CAEEL3.989e-1324.12RAG1-activating protein 1 homolog OS=Caenorhabditi... [more]
R1AP1_DICDI5.210e-1325.53RAG1-activating protein 1 homolog OS=Dictyostelium... [more]
R1AP1_DANRE6.804e-1325.57RAG1-activating protein 1 homolog OS=Danio rerio G... [more]
R1AP1_CAEBR8.887e-1321.20RAG1-activating protein 1 homolog OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3CD01RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306104 ID=DY306104; Name=DY306104; organism=Citrus sinensis; type=EST; length=966bp
CCTGCGAAAACGTTTTGGCACATAGTACAGCGTAGATCAACGGAGGAATT
TGAGAGCATTCCTTATATAAGCAAATTACTGAATGCATACTTTTGGGTTT
GGTATGGAATTGTGAAGCCCAACAGTGTGCTTGTGGCCTCTGTTAATGGT
TTTGGAGCCGCCCTGGAGATTATTTATGTCATTATATTTCTCATTTTTGC
TCCTCCGATGATGAGGGGTAGAACTGCCGTACTTGCCGGTGTTTGCGATG
TGGTGTTTCCCGGCACAACAGTGTTGGTGACTCAAATATTTTTCGACAGG
GATGTGCAAATCAAGGTCTCAGGTTTCTTGTCTTTGTGTTTCAGCATGGT
CGCCTATAGTTCACCTCTTTCAGCCATGAAAACAGTGGTGGTGACAAAGA
GTGTGGAGTACATGCCATTTCTTCTCTCATTTATCCTATTCATAAATGGG
GCAGTTTGGACAGTCTATGCTGTGCTCACAAAAGACCTTTTCATTGGAAT
ACCAAATGGGAGTGGATTTATTCCTGGCGCCGCTCAATTAGTGCTTTATG
TGATGTATTGGAAGCCAAAGTCATCGTCAAAGAAAATTCAGATGATGCTT
TGGAGGAAGGGAGGGCAACTGACCGCCTTAATTCGGCTGAAAATCGTGAA
AAACGTGAAGGCTAAATAAATAAATTAATAAAACTCTTTTAATTAAAAAA
TTGAAAAGTTAAGGGGGCCTTAACCCATTGGTGCCAAAAATTGCCAATAA
TTTCCCCCCATTTTGGTGCCCTTGAAAGGAAAATTTCCCCTTTCCAAAAT
AAATTTTTGGAAACCAAAGAAAAAAAAATGGGATTTTGCCCGGGGGGTAA
AAATTTTTTTAATTAATTTAAATTAACAAAAAACCCCTTTTTTTATTTCT
GTTTGGGCGCCCTTATAGGCCCCTAAAAATACAAAAGGGGGCCGCGAAAA
AATTTCTTTTTTTTCC
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