DY305444
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_ORYSJ (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=THF1 PE=2 SV=1) HSP 1 Score: 329.331 bits (843), Expect = 2.853e-89 Identity = 164/222 (73.87%), Postives = 183/222 (82.43%), Query Frame = 1 Query: 4 DVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXXEYVDXXXXXXXXXTEPHKANEAIKK 669 DVPPTVAETKMNFLK YKRPI SIY+TVLQEL+VQQHLMRYK TYQYD VFALGFVTVYD+LMEGYPS+EDR+AIF+AYITAL EDPEQYR DAQK+EEWAR Q +SLVEF SK+GE+E IL DI+ERA GKG+FSYSRFFAVGLFRLLELANATEPT+L+KLCA LN+NKRSVDRDLDVYRN EYV+ +E K+NEA+ K Sbjct: 56 DVPPTVAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYDAVFALGFVTVYDQLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGNSLVEFSSKDGEIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRSVDRDLDVYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTK 277
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_ARATH (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=1 SV=1) HSP 1 Score: 327.405 bits (838), Expect = 1.084e-88 Identity = 163/231 (70.56%), Postives = 187/231 (80.95%), Query Frame = 1 Query: 1 ADVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXXEYVDXXXXXXXXXTEPHKANEAIKKCLGEYLYS 693 ADVPP V+ETK FLK YKRPIPSIYNTVLQELIVQQHLMRYK+TY+YDPVFALGFVTVYD+LMEGYPSD+DR+AIF+AYI AL EDP+QYRIDAQK+EEWAR QT++SLV+F SKEG++E +L DIA RA K FSYSRFFAVGLFRLLELA+AT+PTVL+KLCA LN+NK+SVDRDLDVYRN EYV+ + KANE I KCLG+ LY+ Sbjct: 62 ADVPP-VSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFVTVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKEGDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVDRDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGDTLYN 291
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_SOLTU (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1) HSP 1 Score: 315.464 bits (807), Expect = 4.264e-85 Identity = 157/227 (69.16%), Postives = 178/227 (78.41%), Query Frame = 1 Query: 13 PTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXXEYVDXXXXXXXXXTEPHKANEAIKKCLGEYLYS 693 PTVA+TK+ FL YKRPIP++YNTVLQELIVQQHL RYK++YQYDPVFALGFVTVYD+LMEGYPS+EDR AIF+AYI ALKEDPEQYR DAQKLEEWAR Q A++LV+F SKEGE+E I DIA+RA K F YSR FAVGLFRLLELAN T+PT+LEKLCA LNVNK+SVDRDLDVYRN EYV+ E KANE + KCLG+Y Y+ Sbjct: 66 PTVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFALGFVTVYDQLMEGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNANTLVDFSSKEGEIENIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKKSVDRDLDVYRNLLSKLVQAKELLKEYVE-REKKKRGERETQKANETVTKCLGDYQYA 291
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_ACAM1 (Protein thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1 PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 9.329e-32 Identity = 72/191 (37.70%), Postives = 118/191 (61.78%), Query Frame = 1 Query: 16 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEG-----EVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELA--NATE-----PTVLEKLCAVLNVNKRSVDRDLDVYR 552 TV++TK F ++ RP+ S+Y V++EL+V+ HL+R ++YDP+FALG T +DR M+GY + D++AIF A A + DP Q + D Q+L E A+ ++A ++++ ++ E++ L +IA+ F YSR FA+GLF LLEL+ N T+ L +C VLN+++ + +DL++YR Sbjct: 6 TVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSFDRFMDGYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSGGDELQWQLRNIAQNP----KFKYSRLFAIGLFTLLELSEGNITQDEESLAEFLPNICTVLNISESKLQKDLEIYR 192
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_TRIEI (Protein thf1 OS=Trichodesmium erythraeum (strain IMS101) GN=thf1 PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 1.347e-30 Identity = 74/187 (39.57%), Postives = 108/187 (57.75%), Query Frame = 1 Query: 16 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEF--PSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANA-------TEPTVLEKLCAVLNVNKRSVDRDLDVY 549 TV++TK F + RPI SIYN V++EL+V+ HL+ Y Y+P +ALG VT +DR M+GY ED+ +IF A I +EDP +YR DA+ LE+ A +AS ++ + SK + L D S F YSR FA+GLF LLE+ + L+K+C LN+ + + +D+D+Y Sbjct: 6 TVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAFDRFMQGYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNIDNTQYLQDDLRAISENSKFRYSRLFAIGLFTLLEIVDTELIKEQEKRTEALKKICQSLNLVEEKLLKDIDLY 192
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_ANASP (Protein thf1 OS=Anabaena sp. (strain PCC 7120) GN=thf1 PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 1.489e-29 Identity = 68/189 (35.98%), Postives = 113/189 (59.79%), Query Frame = 1 Query: 16 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV--EGILNDIAERASGKGNFSYSRFFAVGLFRLLELAN-------ATEPTVLEKLCAVLNVNKRSVDRDLDVYRN 555 TV++TK F L+ RPI +IY V++EL+V+ HL+ + Y+P++ALG VT +DR MEGY + D+E+IF A A++++P++YR DA++L+ A+ + LV + S+ + + L + + NF YSR FA+GLF LLE +N L+ + A L+++ +DL++YR+ Sbjct: 6 TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFMEGYQPERDKESIFSAICQAVEQEPQRYRQDAERLQAVAQSLPVNDLVAWLSQANHLQQDADLQAQLQAIANNSNFKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKSIAAGLHLSDDKFSKDLELYRS 194
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_ANAVT (Protein thf1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=thf1 PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 5.660e-29 Identity = 67/189 (35.45%), Postives = 114/189 (60.32%), Query Frame = 1 Query: 16 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV--EGILNDIAERASGKGNFSYSRFFAVGLFRLLELAN-------ATEPTVLEKLCAVLNVNKRSVDRDLDVYRN 555 TV++TK F L+ RPI +IY V++EL+V+ HL+ + Y+P++ALG VT +DR M+GY + D+E+IF A A++++P++YR DA++L+ A+ + LV + S+ + + L + + NF YSR FA+GLF LLE +N L+ + A L+++ + +DL++YR+ Sbjct: 6 TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFMQGYQPERDKESIFSAICQAVEQEPQRYRQDAERLKAVAQSLPVNDLVAWLSQANHLQQDADLQAQLQAIASNPNFKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKTIAAGLHLSDDKLSKDLELYRS 194
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_NOSP7 (Protein thf1 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=thf1 PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 7.392e-29 Identity = 69/193 (35.75%), Postives = 117/193 (60.62%), Query Frame = 1 Query: 16 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV------EFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELAN----ATEPTVLEKLCAV---LNVNKRSVDRDLDVYRN 555 TV++TK F L+ RPI +IY V++EL+V+ HL+ + Y+P++ALG VT +DR M+GY + D+E+IF A A+++DP+ YR DA++L+ A+G L+ + ++ +++ L IA NF Y+R FA+G+F LLE ++ E + E L A+ L+V+ +++DL++YR+ Sbjct: 6 TVSDTKRTFYNLHTRPINTIYRRVVEELMVEMHLLSVNIDFSYNPIYALGVVTTFDRFMQGYEPERDQESIFNALCRAIEQDPQHYRQDAERLQAIAKGLPVKDLIGWLGQTTYLDRDADLQAQLQAIANNP----NFKYNRLFAIGVFSLLEQSDPELVKDEKQLTEALKAIAAGLHVSDDKLNKDLELYRS 194
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_CYAP4 (Protein thf1 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=thf1 PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 9.654e-29 Identity = 77/190 (40.53%), Postives = 112/190 (58.95%), Query Frame = 1 Query: 10 PPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERA-SGKGNFSYSRFFAVGLFRLLELA-------NATEPTVLEKLCAVLNVNKRSVDRDLDVYRN 555 P TV++TK F + RPI SIY V++EL+V+ HL+R +T+ YDPVFALG VT ++R M+GY D+ +IF A A + DP+Q + DAQ+L RGQ+ SL+++ S + G RA + F YSR FAVGLF LLE A A VL+++ V+++ + +DL+ YR+ Sbjct: 4 PRTVSDTKRAFYHNHARPINSIYRRVVEELLVEIHLLRVNQTFVYDPVFALGVVTTFERFMQGYHPPADQTSIFNAICLAQELDPQQVQQDAQELLGRVRGQSLESLLDWISTAASLGGDEQQNRLRAIASNPTFKYSRLFAVGLFTLLEQAEPELGKDEARLLQVLQQVGEVMHLPVEKMQKDLEQYRS 193
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_CYAP7 (Protein thf1 OS=Cyanothece sp. (strain PCC 7424) GN=thf1 PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 3.106e-27 Identity = 67/190 (35.26%), Postives = 113/190 (59.47%), Query Frame = 1 Query: 16 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGN---FSYSRFFAVGLFRLL-----ELANATE--PTVLEKLCAVLNVNKRSVDRDLDVYRN 555 TV+++K +F + RPI S+Y V++EL+V+ HL+ +QYDPV+ALG VT + R M+GY D D+E+IF A ++ DP+QYR DA+++ E A+ +A L+ + N I + G N + Y+R FA+G++ +L E+ TE V++++ VL++ + + +DLD+YR+ Sbjct: 6 TVSDSKRDFYTKHTRPINSVYRRVVEELMVEMHLLSVNSDFQYDPVYALGVVTSFQRFMQGYRPDADKESIFNALCQSVGGDPQQYRQDAERMIESAKQLSAQQLLFNLESASDSSSGENQILQTLIGIANAPKYKYTRLFAIGIYTILAETDPEMLKNTEKREEVVKQIAKVLHLPEEKMQKDLDLYRS 195 The following BLAST results are available for this feature:
BLAST of DY305444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 25
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Sequences
The
following sequences are available for this feature:
EST sequence >DY305444 ID=DY305444; Name=DY305444; organism=Citrus sinensis; type=EST; length=1249bpback to top |