CX301033

Overview
NameCX301033
Unique NameCX301033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL23_DANRE (60S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.727e-61
Identity = 110/136 (80.88%), Postives = 128/136 (94.12%), Query Frame = 3 
Query:   75 KGRGGAVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSI 482
            +GRGG+ G KFR +LGLPVGAV+NCADNTGAK+L IISV GIKGRLN+LPSA VGD+VMA+ KKGKPELRKKVHPAV++RQRK++RRK+G+++YFEDNAGVIVNNKGEMKGSA+ GPVAKECADLWPRIASN+GSI
Sbjct:    4 RGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL23_RAT (60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.076e-61
Identity = 109/136 (80.15%), Postives = 128/136 (94.12%), Query Frame = 3 
Query:   75 KGRGGAVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSI 482
            +GRGG+ G KFR +LGLPVGAV+NCADNTGAK+L IISV GIKGRLN+LP+A VGD+VMA+ KKGKPELRKKVHPAV++RQRK++RRK+G+++YFEDNAGVIVNNKGEMKGSA+ GPVAKECADLWPRIASN+GSI
Sbjct:    4 RGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL23_PIG (60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.076e-61
Identity = 109/136 (80.15%), Postives = 128/136 (94.12%), Query Frame = 3 
Query:   75 KGRGGAVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSI 482
            +GRGG+ G KFR +LGLPVGAV+NCADNTGAK+L IISV GIKGRLN+LP+A VGD+VMA+ KKGKPELRKKVHPAV++RQRK++RRK+G+++YFEDNAGVIVNNKGEMKGSA+ GPVAKECADLWPRIASN+GSI
Sbjct:    4 RGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL23_MOUSE (60S ribosomal protein L23 OS=Mus musculus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.076e-61
Identity = 109/136 (80.15%), Postives = 128/136 (94.12%), Query Frame = 3 
Query:   75 KGRGGAVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSI 482
            +GRGG+ G KFR +LGLPVGAV+NCADNTGAK+L IISV GIKGRLN+LP+A VGD+VMA+ KKGKPELRKKVHPAV++RQRK++RRK+G+++YFEDNAGVIVNNKGEMKGSA+ GPVAKECADLWPRIASN+GSI
Sbjct:    4 RGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL23_ICTPU (60S ribosomal protein L23 OS=Ictalurus punctatus GN=rpl23 PE=2 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 6.076e-61
Identity = 109/136 (80.15%), Postives = 128/136 (94.12%), Query Frame = 3 
Query:   75 KGRGGAVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSI 482
            +GRGG+ G KFR +LGLPVGAV+NCADNTGAK+L IISV GIKGRLN+LP+A VGD+VMA+ KKGKPELRKKVHPAV++RQRK++RRK+G+++YFEDNAGVIVNNKGEMKGSA+ GPVAKECADLWPRIASN+GSI
Sbjct:    4 RGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL23_HUMAN (60S ribosomal protein L23 OS=Homo sapiens GN=RPL23 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.076e-61
Identity = 109/136 (80.15%), Postives = 128/136 (94.12%), Query Frame = 3 
Query:   75 KGRGGAVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSI 482
            +GRGG+ G KFR +LGLPVGAV+NCADNTGAK+L IISV GIKGRLN+LP+A VGD+VMA+ KKGKPELRKKVHPAV++RQRK++RRK+G+++YFEDNAGVIVNNKGEMKGSA+ GPVAKECADLWPRIASN+GSI
Sbjct:    4 RGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL23_BOVIN (60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 6.076e-61
Identity = 109/136 (80.15%), Postives = 128/136 (94.12%), Query Frame = 3 
Query:   75 KGRGGAVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSI 482
            +GRGG+ G KFR +LGLPVGAV+NCADNTGAK+L IISV GIKGRLN+LP+A VGD+VMA+ KKGKPELRKKVHPAV++RQRK++RRK+G+++YFEDNAGVIVNNKGEMKGSA+ GPVAKECADLWPRIASN+GSI
Sbjct:    4 RGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL23_PONAB (60S ribosomal protein L23 OS=Pongo abelii GN=RPL23 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.768e-60
Identity = 108/136 (79.41%), Postives = 128/136 (94.12%), Query Frame = 3 
Query:   75 KGRGGAVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSI 482
            +GRGG+ G KFR +LGLPVGAV+NCADNTGAK+L IISV GIKG+LN+LP+A VGD+VMA+ KKGKPELRKKVHPAV++RQRK++RRK+G+++YFEDNAGVIVNNKGEMKGSA+ GPVAKECADLWPRIASN+GSI
Sbjct:    4 RGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGQLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL23_CANFA (60S ribosomal protein L23 OS=Canis familiaris GN=RPL23 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.687e-59
Identity = 106/136 (77.94%), Postives = 125/136 (91.91%), Query Frame = 3 
Query:   75 KGRGGAVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSI 482
            +GRGG+ G KFR +LGLPVGAV+NCADNTGAK+L IISV GIKGRLN+LP+A VGD+VMA+ KKGKP LRKKVHPAV++RQRK++RRK+G+++YFEDNAGVIVNNKGEMKGSA+ GPV KECADLWP IASN+GSI
Sbjct:    4 RGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPXLRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVXKECADLWPXIASNAGSI 139
[Close]
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL23_CAEEL (60S ribosomal protein L23 OS=Caenorhabditis elegans GN=rpl-23 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.401e-57
Identity = 105/136 (77.21%), Postives = 122/136 (89.71%), Query Frame = 3 
Query:   75 KGRGGAVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSI 482
            +GRGGA G KFR +LGLPVGAV+NCADNTGAK+L +ISVYGI+GRLN+LPSA VGD+ + S KKGKPELRKKV   V++RQRK +RRK+G +IYFEDNAGVIVNNKGEMKGSA+ GPVAKECADLWPRIA+N+GSI
Sbjct:    4 RGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIAANAGSI 139
The following BLAST results are available for this feature:
BLAST of CX301033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL23_DANRE2.727e-6180.8860S ribosomal protein L23 OS=Danio rerio GN=rpl23 ... [more]
RL23_RAT6.076e-6180.1560S ribosomal protein L23 OS=Rattus norvegicus GN=... [more]
RL23_PIG6.076e-6180.1560S ribosomal protein L23 OS=Sus scrofa GN=RPL23 P... [more]
RL23_MOUSE6.076e-6180.1560S ribosomal protein L23 OS=Mus musculus GN=Rpl23... [more]
RL23_ICTPU6.076e-6180.1560S ribosomal protein L23 OS=Ictalurus punctatus G... [more]
RL23_HUMAN6.076e-6180.1560S ribosomal protein L23 OS=Homo sapiens GN=RPL23... [more]
RL23_BOVIN6.076e-6180.1560S ribosomal protein L23 OS=Bos taurus GN=RPL23 P... [more]
RL23_PONAB1.768e-6079.4160S ribosomal protein L23 OS=Pongo abelii GN=RPL23... [more]
RL23_CANFA5.687e-5977.9460S ribosomal protein L23 OS=Canis familiaris GN=R... [more]
RL23_CAEEL1.401e-5777.2160S ribosomal protein L23 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionC08005A04SK PhyRootSw1 Citrus sinensis cDNA clone C08005A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301033 ID=CX301033; Name=CX301033; organism=Citrus sinensis; type=EST; length=663bp
GAATTCGGCACGAGGAATTAGTTGTGTTTTCACGAGTATATCTCCATATT
TAATCCACTAGAAAAGAAATGGGAAAAGGAAGAGGAGGTGCTGTCGGACT
TAAGTTCCGAACTACTTTAGGTCTTCCAGTTGGAGCCGTTGTTAACTGTG
CTGACAACACTGGTGCCAAGTCTTTAATGATTATCTCTGTATATGGAATC
AAGGGTAGATTGAACAAGTTACCATCTGCTTCCGTTGGTGATTTAGTCAT
GGCCTCCTGTAAGAAGGGTAAACCAGAGTTAAGAAAGAAGGTTCACCCAG
CCGTCATCGTTCGTCAACGTAAGACCTGGAGAAGAAAGGAAGGTCTTTAC
ATCTATTTCGAAGATAATGCTGGTGTTATTGTCAATAATAAGGGTGAAAT
GAAGGGATCTGCCGTCGCAGGACCTGTCGCCAAGGAGTGTGCTGATTTAT
GGCCTCGTATTGCTTCCAACTCTGGTTCCATCCTTTAAATGCAATCACGT
GGAATAAAAAATATTCATAAACACTACTTCCTTATTCTCTATACATAATG
AAGTTCTCATCGATGAAACAATGCATCCAGAGCATAGAAGTGAATAAACA
TCTGAGAATCCAACTGAAACACACTAATTAAATAAAAACTGGTTAAAAAA
AAAAAAAAAAAAA
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