CX300890

Overview
NameCX300890
Unique NameCX300890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300890_ssr521 microsatellite CX300890_ssr521:521..532. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOA_EMENI (GTP-binding protein rhoA OS=Emericella nidulans GN=rhoA PE=3 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 8.267e-80
Identity = 140/162 (86.42%), Postives = 150/162 (92.59%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGACGKTCLLIVFSKG FPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVIL+CF+VD+PDSL+NVQEKWISEVLHFCQGLPIILVGCK+DLR D KTIEEL K  QKPV+ E+G  V  KIGAYKYLECSAR+ +GV+EVFE
Sbjct:   11 VGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCQGLPIILVGCKKDLRHDPKTIEELNKTSQKPVTPEQGEEVRKKIGAYKYLECSARTNEGVREVFE 172          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHO1_SCHPO (GTP-binding protein rho1 OS=Schizosaccharomyces pombe GN=rho1 PE=1 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 2.940e-77
Identity = 135/162 (83.33%), Postives = 148/162 (91.36%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGACGKTCLLIVFSKG FPEVYVPTVFENYVADVEVDG+HVELALWDTAGQEDYDRLRPLSYPDSHVIL+CF+VD+PDSL+NVQEKWISEVLHFC  LPI+LV CK DLR+D K IEEL+K  Q PV+ EEG AVA KIGAYKYLECSA++ +GV+EVFE
Sbjct:   12 VGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLVACKADLRNDPKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFE 173          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHO5_SCHPO (GTP-binding protein rho5 OS=Schizosaccharomyces pombe GN=rho5 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 5.016e-77
Identity = 134/162 (82.72%), Postives = 147/162 (90.74%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGACGKTCLLIVFSKG FPEVYVPTVFENYVADVEVDG+H+ELALWDTAGQEDYDRLRPLSYPDSHV+L+CFSVD P+SL+NVQEKWISEVLHFC  LPI+LVGCK DLR+D KTIEEL+K  QKP++ EEG  VA KIGAYKYLECSA+  +GV EVFE
Sbjct:   12 VGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPILLVGCKVDLRNDPKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFE 173          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHO1_CANAL (GTP-binding protein RHO1 OS=Candida albicans GN=RHO1 PE=3 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.156e-73
Identity = 132/162 (81.48%), Postives = 145/162 (89.51%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGACGKTCLLIVFSKG FPEVYVPTVFENYVADVEVDG+ VELALWDTAGQEDYDRLRPLSYPDS+VIL+CFSVD+PDSL+NV EKWISEVLHFCQG+PIILVGCK DLRDD  TIE L + +Q+PVS  EG  VA +IGA  YLECSA++G GV+EVFE
Sbjct:   15 VGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRKVELALWDTAGQEDYDRLRPLSYPDSNVILICFSVDSPDSLDNVLEKWISEVLHFCQGVPIILVGCKSDLRDDPHTIEALRQQQQQPVSTSEGQQVAQRIGAADYLECSAKTGRGVREVFE 176          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHO1_YEAST (GTP-binding protein RHO1 OS=Saccharomyces cerevisiae GN=RHO1 PE=1 SV=3)

HSP 1 Score: 273.092 bits (697), Expect = 7.495e-73
Identity = 128/162 (79.01%), Postives = 148/162 (91.36%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGACGKTCLLIVFSKG+FPEVYVPTVFENYVADVEVDG+ VELALWDTAGQEDYDRLRPLSYPDS+V+L+CFS+D PDSLENVQEKWI+EVLHFCQG+PIILVGCK DLR+D +TIE+L +  Q+PV+ +EG +VA +IGA  Y ECSA++G GV+EVFE
Sbjct:   16 VGDGACGKTCLLIVFSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFE 177          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHO1_CAEEL (Ras-like GTP-binding protein rhoA OS=Caenorhabditis elegans GN=rho-1 PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 2.666e-70
Identity = 125/182 (68.68%), Postives = 146/182 (80.22%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFEHXXXXXXXXXXXXXXGCLIL 547
            VGDGACGKTCLLIVFSK +FP+VYVPTVFENYVAD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFS+D+PDSLEN+ EKW  EV HFC  +PIILVG KRDLR D +T+ ELAK KQ+PV  E+G A+A +IGA+ YLECSA++ DG++EVFE                C+IL
Sbjct:   11 VGDGACGKTCLLIVFSKDQFPDVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVRHFCPNVPIILVGNKRDLRSDPQTVRELAKMKQEPVKPEQGRAIAEQIGAFAYLECSAKTKDGIREVFEKATQAALQQKKKKKSKCMIL 192          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHO1_ASHGO (GTP-binding protein RHO1 OS=Ashbya gossypii GN=RHO1 PE=3 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 3.481e-70
Identity = 122/162 (75.31%), Postives = 146/162 (90.12%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGACGKTCLLIVF+KG+FP+VYVPTVF+NYVADVEVDG+ VELALWDTAGQEDYDRLRPLSYPDS+V+L+C+S+D PDSLENV EKWISEVL+FCQG+PIILVGCK DLR+D + IE+L +  Q+PVSQ +   VA +IGA +Y+ECSA++G GV+EVFE
Sbjct:   17 VGDGACGKTCLLIVFAKGKFPQVYVPTVFDNYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICYSIDLPDSLENVMEKWISEVLYFCQGVPIILVGCKADLRNDPQVIEQLRQQGQQPVSQAQAQEVADQIGAVEYIECSAKTGFGVREVFE 178          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHO1_KLULA (GTP-binding protein Rho1 OS=Kluyveromyces lactis GN=RHO1 PE=3 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 7.756e-70
Identity = 122/162 (75.31%), Postives = 143/162 (88.27%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGACGKTCLLIVF+KG+FP+VYVPTVF+NYVADVEVDG+ VELALWDTAGQEDYDRLRPLSYPDS+V+L+C+S+D PDSLENV EKWISEVLHFCQG+PIILVGCK DLR+D + +EEL     +PVSQ +   VA +IGA  Y+ECSA++G GV+EVFE
Sbjct:   18 VGDGACGKTCLLIVFAKGKFPQVYVPTVFDNYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICYSIDLPDSLENVMEKWISEVLHFCQGVPIILVGCKADLRNDPQVVEELRAQGLQPVSQAQAQEVADQIGAVDYIECSAKTGYGVREVFE 179          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHO1_DROME (Ras-like GTP-binding protein Rho1 OS=Drosophila melanogaster GN=Rho1 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 2.947e-69
Identity = 126/182 (69.23%), Postives = 145/182 (79.67%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFEHXXXXXXXXXXXXXXGCLIL 547
            VGDGACGKTCLLIVFSK +FPEVYVPTVFENYVAD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFSVD+PDSLEN+ EKW  EV HFC  +PIILVG K+DLR+D  TI +LAK KQ+PV  +EG A+A KI A+ YLECSA+S +GV++VFE                CL+L
Sbjct:   11 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIRDLAKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVRDVFETATRAALQVKKRKKTRCLLL 192          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHO_APLCA (Ras-like GTP-binding protein RHO OS=Aplysia californica GN=RHO PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 6.566e-69
Identity = 124/182 (68.13%), Postives = 144/182 (79.12%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFEHXXXXXXXXXXXXXXGCLIL 547
            VGDGACGKTCLLIVFSK +FPEVYVPTVFENYVAD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFS+D+PDSLEN+ EKW  EV HFC  +PIILVG K+DLR+D  T  EL K KQ+PV  E+G A+A KI AY YLECSA++ +GV++VFE               GC++L
Sbjct:   11 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVRHFCPNVPIILVGNKKDLRNDESTKRELMKMKQEPVRPEDGRAMAEKINAYSYLECSAKTKEGVRDVFETATRAALQVKKKKKGGCVVL 192          
The following BLAST results are available for this feature:
BLAST of CX300890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 427
Match NameE-valueIdentityDescription
RHOA_EMENI8.267e-8086.42GTP-binding protein rhoA OS=Emericella nidulans GN... [more]
RHO1_SCHPO2.940e-7783.33GTP-binding protein rho1 OS=Schizosaccharomyces po... [more]
RHO5_SCHPO5.016e-7782.72GTP-binding protein rho5 OS=Schizosaccharomyces po... [more]
RHO1_CANAL1.156e-7381.48GTP-binding protein RHO1 OS=Candida albicans GN=RH... [more]
RHO1_YEAST7.495e-7379.01GTP-binding protein RHO1 OS=Saccharomyces cerevisi... [more]
RHO1_CAEEL2.666e-7068.68Ras-like GTP-binding protein rhoA OS=Caenorhabditi... [more]
RHO1_ASHGO3.481e-7075.31GTP-binding protein RHO1 OS=Ashbya gossypii GN=RHO... [more]
RHO1_KLULA7.756e-7075.31GTP-binding protein Rho1 OS=Kluyveromyces lactis G... [more]
RHO1_DROME2.947e-6969.23Ras-like GTP-binding protein Rho1 OS=Drosophila me... [more]
RHO_APLCA6.566e-6968.13Ras-like GTP-binding protein RHO OS=Aplysia califo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08003D04SK PhyRootSw1 Citrus sinensis cDNA clone C08003D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300890 ID=CX300890; Name=CX300890; organism=Citrus sinensis; type=EST; length=599bp
TGTTGGTGACGGTGCCTGCGGAAAGACCTGTCTCCTCATTGTCTTCTCAA
AGGGAGAGTTCCCAGAGGTCTATGTGCCCACGGTGTTTGAGAACTACGTC
GCTGATGTTGAGGTCGATGGAAAGCACGTCGAGCTGGCCCTTTGGGATAC
TGCTGGTCAGGAGGATTACGACCGTCTGCGCCCTCTGTCATACCCCGATT
CACACGTGATCCTTGTGTGCTTCTCCGTAGACAACCCGGACTCGCTGGAA
AACGTCCAGGAAAAGTGGATTTCTGAGGTTCTCCACTTCTGCCAGGGGCT
TCCCATCATCCTTGTGGGTTGCAAGAGGGATCTGAGAGACGACGCCAAAA
CCATTGAGGAGCTCGCCAAGAACAAGCAGAAGCCCGTTTCCCAAGAGGAA
GGAGCGGCCGTGGCTGCGAAGATCGGCGCCTACAAATACCTCGAGTGCTC
TGCTAGGTCGGGAGATGGAGTGAAGGAGGTGTTCGAGCATGCTACTAGGG
CTGCCCTCCTCACCAAGGCCAAGAAGAAGAAGGGTTGCTTGATCCTCTAA
ACGAAGGGGAGCCGATTCCGATTCTCTTCGCTTTTTTTCTTTTTCTTCT
back to top