CX300880

Overview
NameCX300880
Unique NameCX300880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300880 vs. ExPASy Swiss-Prot
Match: KCC1D_HUMAN (Calcium/calmodulin-dependent protein kinase type 1D OS=Homo sapiens GN=CAMK1D PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.809e-35
Identity = 71/147 (48.30%), Postives = 88/147 (59.86%), Query Frame = 2
Query:    2 ACGTPGYVAPEILRGTAYGKQVDLWSIGVILYILLCGFPPFYDDNNKKLFAQIINANYSFPDPYWTNISPLAKDLVSKLLIVDPNKRLNADQILAHPWMHEDGXXXXXXXXXXXXXYN---ARRRFRSAIRAVQITQLLRKLHPGAS 433
            ACGTPGYVAPE+L    Y K VD WSIGVI YILLCG+PPFYD+N+ KLF QI+ A Y F  PYW +IS  AKD +  L+  DPNKR   +Q   HPW+  D                   A+ ++R A  A  + + +RKLH G+S
Sbjct:  181 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALNKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLHLGSS 327          
BLAST of CX300880 vs. ExPASy Swiss-Prot
Match: MYLKA_DICDI (Myosin light chain kinase A OS=Dictyostelium discoideum GN=mlkA PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.284e-33
Identity = 63/99 (63.64%), Postives = 74/99 (74.75%), Query Frame = 2
Query:    2 ACGTPGYVAPEILRGTAYGKQVDLWSIGVILYILLCGFPPFYDDNNKKLFAQIINANYSFPDPYWTNISPLAKDLVSKLLIVDPNKRLNADQILAHPWM 298
            ACGTP YVAPE+L  T Y K+VD+WSIGVI YILLCGFPPFY D   ++F QI+ ANY FP+ YW  IS  AKD + KLL+VD +KRLNA   L HPW+
Sbjct:  167 ACGTPSYVAPEVLNATGYDKEVDMWSIGVITYILLCGFPPFYGDTVPEIFEQIMEANYEFPEEYWGGISKEAKDFIGKLLVVDVSKRLNATNALNHPWL 265          
BLAST of CX300880 vs. ExPASy Swiss-Prot
Match: KCC4_MOUSE (Calcium/calmodulin-dependent protein kinase type IV OS=Mus musculus GN=Camk4 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.284e-33
Identity = 81/215 (37.67%), Postives = 115/215 (53.49%), Query Frame = 2
Query:    5 CGTPGYVAPEILRGTAYGKQVDLWSIGVILYILLCGFPPFYDDNNKK-LFAQIINANYSFPDPYWTNISPLAKDLVSKLLIVDPNKRLNADQILAHPWM--HEDGXXXXXXXXXXXXXYNARRRFRSAIRAVQITQLLRKLHPG---------ASAKPVSILSAVESEETSGENTTQPNTSNHSNEGSEPATHANSFKS-PLESDS---EEDTNT 601
            CGTPGY APEILRG AYG +VD+WS+G+I YILLCGF PFYD+   + +F +I+N  Y F  P+W  +S  AKDLV KL+++DP KRL   Q L HPW+                   +NARR+ ++A++AV  +  L               AS+ P S   A +S +  G+   + +      E    A      +S  +E D+   EE+T++
Sbjct:  198 CGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVKKLIVLDPKKRLTTFQALQHPWVTGKAANFVHMDTAQKKLQEFNARRKLKAAVKAVVASSRLGSASSSHTSIQENHKASSDPPSTQDAKDSTDLLGKKMQEEDQEEDQVEAEASADEMRKLQSEEVEKDAGVKEEETSS 412          
BLAST of CX300880 vs. ExPASy Swiss-Prot
Match: KCC1D_MOUSE (Calcium/calmodulin-dependent protein kinase type 1D OS=Mus musculus GN=Camk1d PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.284e-33
Identity = 69/147 (46.94%), Postives = 87/147 (59.18%), Query Frame = 2
Query:    2 ACGTPGYVAPEILRGTAYGKQVDLWSIGVILYILLCGFPPFYDDNNKKLFAQIINANYSFPDPYWTNISPLAKDLVSKLLIVDPNKRLNADQILAHPWMHEDGXXXXXXXXXXXXXYN---ARRRFRSAIRAVQITQLLRKLHPGAS 433
            ACGTPGYVAPE+L    Y K VD WSIGVI YILLCG+PPFYD+N+ KLF QI+ A Y F  PYW +IS  AKD +  L+  DPNKR   +Q   HPW+  D                   A+ ++R A  A  + + +R+L  G+S
Sbjct:  181 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRRLQLGSS 327          
BLAST of CX300880 vs. ExPASy Swiss-Prot
Match: MYLKB_DICDI (Probable myosin light chain kinase DDB_G0271550 OS=Dictyostelium discoideum GN=DDB_G0271550 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.677e-33
Identity = 79/205 (38.54%), Postives = 109/205 (53.17%), Query Frame = 2
Query:    2 ACGTPGYVAPEILRGTAYGKQVDLWSIGVILYILLCGFPPFYDDNNKKLFAQIINANYSFPDPYWTNISPLAKDLVSKLLIVDPNKRLNADQILAHPWM---HEDGXXXXXXXXXXXXXYNARRRFRSA--IRAVQITQLLRKLHPGASAKPVSILSAVESEE-TSGENTTQPNTSNHSNEGSEPATHANSFKSPLESDSEEDTN 598
            ACGTP YVAPEIL    Y   VD+WSIGVI YILLCGF PFY D + +LF +I++  Y FP+P W  I+ LAKD +S+LLI++P +R  A Q + HPW+   H D                 R R  S   I  ++ +Q    LH   S    + LS+  S   TS  N    N SN+SN  +  + + N+  +   +++  + N
Sbjct:  180 ACGTPDYVAPEILECKPYDTSVDMWSIGVITYILLCGFAPFYADTHHELFQKILDLEYDFPEPEWNGITDLAKDFISQLLIINPEERWTASQCIKHPWLAENHGDKELKSLDSAISSMKDYVRNREASTSNILKMRASQSTPNLHSANSNTNTNSLSSSNSNNTTSNSNNNNNNNSNNSNNNNNNSNNNNNINNNNNNNNNNNNN 384          
BLAST of CX300880 vs. ExPASy Swiss-Prot
Match: KCC1A_RAT (Calcium/calmodulin-dependent protein kinase type 1 OS=Rattus norvegicus GN=Camk1 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.861e-33
Identity = 69/147 (46.94%), Postives = 86/147 (58.50%), Query Frame = 2
Query:    2 ACGTPGYVAPEILRGTAYGKQVDLWSIGVILYILLCGFPPFYDDNNKKLFAQIINANYSFPDPYWTNISPLAKDLVSKLLIVDPNKRLNADQILAHPWMHEDGXXXXXXXXXXXXXYN---ARRRFRSAIRAVQITQLLRKLHPGAS 433
            ACGTPGYVAPE+L    Y K VD WSIGVI YILLCG+PPFYD+N+ KLF QI+ A Y F  PYW +IS  AKD +  L+  DP KR   +Q L HPW+  D                   A+ +++ A  A  + + +RKL  G S
Sbjct:  178 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQHPWIAGDTALDKNIHQSVSEQIKKNFAKSKWKQAFNATAVVRHMRKLQLGTS 324          
BLAST of CX300880 vs. ExPASy Swiss-Prot
Match: KCC1A_MOUSE (Calcium/calmodulin-dependent protein kinase type 1 OS=Mus musculus GN=Camk1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.861e-33
Identity = 69/147 (46.94%), Postives = 86/147 (58.50%), Query Frame = 2
Query:    2 ACGTPGYVAPEILRGTAYGKQVDLWSIGVILYILLCGFPPFYDDNNKKLFAQIINANYSFPDPYWTNISPLAKDLVSKLLIVDPNKRLNADQILAHPWMHEDGXXXXXXXXXXXXXYN---ARRRFRSAIRAVQITQLLRKLHPGAS 433
            ACGTPGYVAPE+L    Y K VD WSIGVI YILLCG+PPFYD+N+ KLF QI+ A Y F  PYW +IS  AKD +  L+  DP KR   +Q L HPW+  D                   A+ +++ A  A  + + +RKL  G S
Sbjct:  178 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQHPWIAGDTALDKNIHQSVSEQIKKNFAKSKWKQAFNATAVVRHMRKLQLGTS 324          
BLAST of CX300880 vs. ExPASy Swiss-Prot
Match: KCC1A_HUMAN (Calcium/calmodulin-dependent protein kinase type 1 OS=Homo sapiens GN=CAMK1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.861e-33
Identity = 69/147 (46.94%), Postives = 86/147 (58.50%), Query Frame = 2
Query:    2 ACGTPGYVAPEILRGTAYGKQVDLWSIGVILYILLCGFPPFYDDNNKKLFAQIINANYSFPDPYWTNISPLAKDLVSKLLIVDPNKRLNADQILAHPWMHEDGXXXXXXXXXXXXXYN---ARRRFRSAIRAVQITQLLRKLHPGAS 433
            ACGTPGYVAPE+L    Y K VD WSIGVI YILLCG+PPFYD+N+ KLF QI+ A Y F  PYW +IS  AKD +  L+  DP KR   +Q L HPW+  D                   A+ +++ A  A  + + +RKL  G S
Sbjct:  178 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQHPWIAGDTALDKNIHQSVSEQIKKNFAKSKWKQAFNATAVVRHMRKLQLGTS 324          
BLAST of CX300880 vs. ExPASy Swiss-Prot
Match: KCC4_RAT (Calcium/calmodulin-dependent protein kinase type IV OS=Rattus norvegicus GN=Camk4 PE=1 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 6.373e-33
Identity = 77/200 (38.50%), Postives = 110/200 (55.00%), Query Frame = 2
Query:    5 CGTPGYVAPEILRGTAYGKQVDLWSIGVILYILLCGFPPFYDDNNKK-LFAQIINANYSFPDPYWTNISPLAKDLVSKLLIVDPNKRLNADQILAHPWM--HEDGXXXXXXXXXXXXXYNARRRFRSAIRAVQITQLLRKLHPGASAKPVSILSAVESEET-SGENTTQPNTSNHSNEGSEPATHANSFKSPLESDSEED 592
            CGTPGY APEILRG AYG +VD+WS+G+I YILLCGF PFYD+   + +F +I+N  Y F  P+W  +S  AKDLV KL+++DP KRL   Q L HPW+                   +NARR+ ++A++AV  +  L       +    S  ++ E++    G++ T P  +       E A  A      L+S+  E+
Sbjct:  198 CGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVKKLIVLDPKKRLTTFQALQHPWVTGKAANFVHMDTAQKKLQEFNARRKLKAAVKAVVASSRLGSASSSHTNIQESNKASSEAQPAQDGKDKTDPLENKMQAGDHEAAKAAADETMKLQSEEVEE 397          
BLAST of CX300880 vs. ExPASy Swiss-Prot
Match: KCC4_HUMAN (Calcium/calmodulin-dependent protein kinase type IV OS=Homo sapiens GN=CAMK4 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.131e-32
Identity = 65/132 (49.24%), Postives = 86/132 (65.15%), Query Frame = 2
Query:    5 CGTPGYVAPEILRGTAYGKQVDLWSIGVILYILLCGFPPFYDDNNKK-LFAQIINANYSFPDPYWTNISPLAKDLVSKLLIVDPNKRLNADQILAHPWM--HEDGXXXXXXXXXXXXXYNARRRFRSAIRAV 391
            CGTPGY APEILRG AYG +VD+WS+G+I YILLCGF PFYD+   + +F +I+N  Y F  P+W  +S  AKDLV KL+++DP KRL   Q L HPW+                   +NARR+ ++A++AV
Sbjct:  202 CGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQHPWVTGKAANFVHMDTAQKKLQEFNARRKLKAAVKAV 333          
The following BLAST results are available for this feature:
BLAST of CX300880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KCC1D_HUMAN6.809e-3548.30Calcium/calmodulin-dependent protein kinase type 1... [more]
MYLKA_DICDI1.284e-3363.64Myosin light chain kinase A OS=Dictyostelium disco... [more]
KCC4_MOUSE1.284e-3337.67Calcium/calmodulin-dependent protein kinase type I... [more]
KCC1D_MOUSE1.284e-3346.94Calcium/calmodulin-dependent protein kinase type 1... [more]
MYLKB_DICDI1.677e-3338.54Probable myosin light chain kinase DDB_G0271550 OS... [more]
KCC1A_RAT2.861e-3346.94Calcium/calmodulin-dependent protein kinase type 1... [more]
KCC1A_MOUSE2.861e-3346.94Calcium/calmodulin-dependent protein kinase type 1... [more]
KCC1A_HUMAN2.861e-3346.94Calcium/calmodulin-dependent protein kinase type 1... [more]
KCC4_RAT6.373e-3338.50Calcium/calmodulin-dependent protein kinase type I... [more]
KCC4_HUMAN4.131e-3249.24Calcium/calmodulin-dependent protein kinase type I... [more]

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Properties
Property NameValue
Genbank descriptionC08003C04SK PhyRootSw1 Citrus sinensis cDNA clone C08003C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300880 ID=CX300880; Name=CX300880; organism=Citrus sinensis; type=EST; length=630bp
AGCTTGTGGCACCCCAGGATATGTAGCTCCAGAAATTTTACGCGGTACGG
CCTACGGGAAACAAGTCGATCTATGGTCCATTGGTGTGATTCTATACATT
CTATTATGTGGGTTCCCACCTTTTTATGACGACAATAATAAAAAACTCTT
TGCTCAGATTATAAATGCAAATTATTCATTCCCTGATCCCTACTGGACGA
ATATTTCGCCATTAGCAAAAGATTTAGTATCAAAATTATTAATAGTCGAT
CCTAATAAACGATTAAATGCTGATCAGATTTTAGCTCATCCATGGATGCA
TGAAGACGGATCAAAATTATCATTAGATTTAAAATCGAATTTAAAATCAT
ATAATGCACGAAGAAGATTTAGATCAGCGATTAGAGCTGTACAAATAACA
CAATTATTACGAAAATTACATCCTGGTGCATCAGCAAAACCAGTTTCTAT
TCTCTCTGCAGTCGAATCAGAGGAAACGAGTGGTGAGAATACCACACAAC
CAAATACTAGCAATCATAGTAATGAAGGCAGTGAACCTGCAACACATGCA
AACTCTTTTAAATCACCTTTAGAATCTGATTCAGAAGAAGATACGAATAC
AACTGCTGCTAGTAGCATTGGGAATATAGG
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