DR908167

Overview
NameDR908167
Unique NameDR908167
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10917 contig Csv1_Contig10917:61..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908167 vs. ExPASy Swiss-Prot
Match: UFD1_DICDI (Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum GN=ufd1 PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.999e-60
Identity = 107/187 (57.22%), Postives = 143/187 (76.47%), Query Frame = 3
Query:  102 FEQSYRCYPASFI--EKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPEKPIASA 656
            +EQ ++ +P SF+  EK  +ESG KI++PPSAL+ L+ L+I YPMLFE+ N  + + SHCGVLEFIAEEG+ Y+P WMM+NL L+EG+ + +KN TL KGT+VK+QP T +F+DISNPKA+LE +LR ++ LT  D IM+ YNN KYY+ ++E KP+NAISIIE D  VDFAPP+D KE   P  S+
Sbjct:   25 YEQKFKAFPISFLPKEKHSLESGGKILLPPSALNALSRLNIQYPMLFEISNPISGKKSHCGVLEFIAEEGICYLPLWMMQNLQLKEGEFIDIKNATLAKGTFVKIQPRTSNFIDISNPKAVLENSLRKFATLTKDDEIMIDYNNTKYYLKVVELKPANAISIIEADVSVDFAPPMDSKEATSPSTSS 211          
BLAST of DR908167 vs. ExPASy Swiss-Prot
Match: UFD1_RAT (Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus GN=Ufd1l PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.770e-59
Identity = 106/191 (55.50%), Postives = 140/191 (73.30%), Query Frame = 3
Query:  102 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPEKPIASASS 662
            F   YRC+  S +  P     +E G KIIMPPSALD+L+ L+I YPMLF+L N  ++R++HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L   TY K QP + DFLDI+NPKA+LE  LRN++CLTTGD I + YN K Y + ++ETKP  A+SIIE D  VDF  PL YKEPE+P+    S
Sbjct:   19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPERPVQHEES 209          
BLAST of DR908167 vs. ExPASy Swiss-Prot
Match: UFD1_MOUSE (Ubiquitin fusion degradation protein 1 homolog OS=Mus musculus GN=Ufd1l PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.871e-58
Identity = 104/191 (54.45%), Postives = 140/191 (73.30%), Query Frame = 3
Query:  102 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPEKPIASASS 662
            F   YRC+  S +  P     +E G KIIMPPSALD+L+ L+I YPMLF+L N  ++R++HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L   TY K QP + DFLDI+NPKA+LE  LRN++C+TTGD I + YN K Y + ++ETKP  A+SIIE D  VDF  PL YKEP++P+    S
Sbjct:   19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACMTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPKRPVQHEES 209          
BLAST of DR908167 vs. ExPASy Swiss-Prot
Match: UFD1_HUMAN (Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens GN=UFD1L PE=1 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 3.192e-58
Identity = 105/191 (54.97%), Postives = 139/191 (72.77%), Query Frame = 3
Query:  102 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPEKPIASASS 662
            F   YRC+  S +  P     +E G KIIMPPSALD+L+ L+I YPMLF+L N  ++R++HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L   TY K QP + DFLDI+NPKA+LE  LRN++CLTTGD I + YN K Y + ++ETKP  A+SIIE D  VDF  PL YKEPE+ +    S
Sbjct:   19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPERQVQHEES 209          
BLAST of DR908167 vs. ExPASy Swiss-Prot
Match: UFD1_DROME (Ubiquitin fusion degradation protein 1 homolog OS=Drosophila melanogaster GN=Ufd1-like PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.529e-57
Identity = 108/214 (50.47%), Postives = 146/214 (68.22%), Query Frame = 3
Query:   42 FEYSFTVKMFFDGYGYHGTSFEQSYRCYPASFI---EKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPEKPIASASSRATA 674
            F +S    MF +G  +H      +Y+C+  S +   E+  +E G KIIMPPSALD L  L+++YPMLF+L N    R SH GVLEF+A+EG  Y+P+WMMENLLL EGDI+ +++V+LP  T+ K QPH+ DFLDI+NPKA+LE  LRN++CLT GD I + YN K Y + ++ETKP NA+SIIE D  V+F  P+ YK+  +  AS S +  A
Sbjct:    2 FHFSGFNMMFPEGRNFHA-----NYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEYPMLFKLTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLLLGEGDILNIESVSLPVATFSKFQPHSTDFLDITNPKAVLENALRNFACLTRGDVIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAPVGYKDHSETQASGSGQQGA 210          
BLAST of DR908167 vs. ExPASy Swiss-Prot
Match: UFD1_SCHPO (Ubiquitin fusion degradation protein 1 OS=Schizosaccharomyces pombe GN=ufd1 PE=2 SV=4)

HSP 1 Score: 197.593 bits (501), Expect = 5.457e-50
Identity = 91/183 (49.73%), Postives = 132/183 (72.13%), Query Frame = 3
Query:  102 FEQSYRCYPASFI---EKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNA---ISIIETDCEVDFAPPLDYKE 632
            F+  YRCYP + I   E+P +  G K+I+PPSAL++L+ L++ YPMLF+  N AAE+ +H GVLEFIAEEG +Y+PYWMM  L L+ GD+VRV N  + +G+YVKLQP + +FLDI++ +A+LE  LRN+S LT  D   + YN++ Y I +I+ +P ++   +S++ETD  VDF PP+ Y+E
Sbjct:   32 FDTRYRCYPVAMIPGEERPNVNYGGKVILPPSALEKLSRLNVSYPMLFDFENEAAEKKTHGGVLEFIAEEGRVYLPYWMMTTLSLEPGDLVRVINTDIAQGSYVKLQPQSVNFLDITDHRAVLENALRNFSTLTKSDIFEILYNDQVYQIKVIDVQPDDSRHVVSVVETDLVVDFDPPIGYEE 214          
BLAST of DR908167 vs. ExPASy Swiss-Prot
Match: UFD1_YEAST (Ubiquitin fusion degradation protein 1 OS=Saccharomyces cerevisiae GN=UFD1 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.755e-48
Identity = 95/187 (50.80%), Postives = 128/187 (68.45%), Query Frame = 3
Query:   99 SFEQSYRCYPASF----IEKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKP---SNAISIIETDCEVDFAPPLDYKEPE 638
            +FE+ +RCYP +     I K     G KI +PPSAL +L+ L+I YPMLF+L  N   RV+H GVLEFIAEEG +Y+P WMME L +Q G ++++ +  +P G +VKL+P + DFLDIS+PKA+LE  LRN+S LT  D I ++YN K + I I+E KP   S +I +IETD   DFAPP+ Y EP+
Sbjct:   20 TFEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVTHGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVDFLDISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDFAPPVGYVEPD 206          
BLAST of DR908167 vs. ExPASy Swiss-Prot
Match: UFD1_CAEEL (Ubiquitin fusion degradation protein 1 homolog OS=Caenorhabditis elegans GN=ufd-1 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.898e-41
Identity = 85/204 (41.67%), Postives = 127/204 (62.25%), Query Frame = 3
Query:   99 SFEQSYRCYPASFIEKP------QIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPEKPIASASSRATAKAEEAS 692
            +++Q++  Y   F+         +I  G KI++P SAL+ L   +I  PMLF+L N A +RV+HCGVLEF A EG   +P WMM+ L L +GD +R+++ TLPK T+ KL+P + +FL+I+NPKA+LE  LR Y+CLT  D I  +Y  +     +++ KP+N++ IIE D  +DF PP  Y E  + +  A + A   A +AS
Sbjct:   20 NYDQTFVVYGPVFLPNATQSKISEINYGGKILLPSSALNLLMQYNIPMPMLFKLTNMAVQRVTHCGVLEFSAPEGQAILPLWMMQQLGLDDGDTIRIESATLPKATFAKLKPMSLEFLNITNPKAVLEVELRKYACLTKNDRIPTSYAGQTLEFLVVDLKPANSVCIIECDVNLDFDPPEGYVEQPRQVTPAVT-AKPPAPDAS 222          
The following BLAST results are available for this feature:
BLAST of DR908167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
UFD1_DICDI1.999e-6057.22Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_RAT3.770e-5955.50Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_MOUSE1.871e-5854.45Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_HUMAN3.192e-5854.97Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_DROME3.529e-5750.47Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_SCHPO5.457e-5049.73Ubiquitin fusion degradation protein 1 OS=Schizosa... [more]
UFD1_YEAST1.755e-4850.80Ubiquitin fusion degradation protein 1 OS=Saccharo... [more]
UFD1_CAEEL7.898e-4141.67Ubiquitin fusion degradation protein 1 homolog OS=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16295 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-24_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908167 ID=DR908167; Name=DR908167; organism=Citrus sinensis; type=EST; length=705bp
TCTCCGTCTCTCTTCGGGAGCTGAAAGGTTGACTATCTTGGTTTGAATAC
TCATTCACAGTAAAAATGTTTTTTGATGGATATGGATATCATGGGACATC
ATTTGAGCAGAGTTACCGATGTTACCCTGCATCATTTATTGAAAAGCCAC
AAATAGAAAGTGGTGACAAAATTATAATGCCTCCTTCAGCCCTTGATCGC
CTTGCATCTTTGCATATTGATTATCCAATGTTGTTTGAGCTACGTAATAA
TGCGGCTGAGCGGGTTTCCCACTGTGGAGTTCTTGAGTTTATTGCAGAGG
AAGGCATGATCTATATGCCATACTGGATGATGGAGAACCTGCTTTTACAA
GAGGGAGATATTGTGCGAGTGAAAAATGTGACACTTCCAAAGGGAACATA
TGTCAAACTTCAACCTCACACAAAGGACTTTCTCGATATTTCTAATCCCA
AAGCCATCTTGGAGACGACGTTAAGGAATTATTCCTGCTTGACCACTGGG
GACAGTATTATGGTGGCATATAACAATAAGAAATATTACATTGACATTAT
AGAGACGAAGCCTTCTAATGCAATAAGCATCATTGAGACTGACTGTGAGG
TAGATTTTGCACCTCCTCTGGATTATAAGGAACCTGAAAAACCAATTGCA
TCTGCTTCAAGTAGGGCAACAGCAAAAGCTGAAGAGGCTTCTGTTGAGAC
CGAAC
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