DR908084

Overview
NameDR908084
Unique NameDR908084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6316 contig Csv1_Contig6316:1..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908084 vs. ExPASy Swiss-Prot
Match: FUCO1_ORYSJ (Putative alpha-L-fucosidase 1 OS=Oryza sativa subsp. japonica GN=Os04g0560400 PE=3 SV=2)

HSP 1 Score: 289.656 bits (740), Expect = 2.995e-86
Identity = 132/221 (59.73%), Postives = 159/221 (71.95%), Query Frame = 1
Query:    1 LDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVTHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINIFSDAGPDVRWVGNEKGFAGSTCWSTINRTSLSIGNGSIVDYLSTGDAKGTDWLPAECDVSIRKGWFWHKSEHPRN*VSFL 663
            LDA QW   AA  G   ++LTAKHHDGFCLWPS  T +SV  SPWK G GDVV EL  AA+A G+ +GLYLSPWDRH+P YG  + YNE+YL Q+ ELLTRYGDV E+W DGAKG    +M Y F  WFA++ +LQ  + IFSDAGPD RWVG+E G AG TCWS  N+++++IG+  I +Y   GD  G DW+PAECDVSIR GWFWH SE P+N  + L
Sbjct:   83 LDAGQWARAAAAGGFGRVVLTAKHHDGFCLWPSALTNYSVAASPWKGGAGDVVGELAAAARAEGIGLGLYLSPWDRHEPVYGDTVAYNEHYLGQMTELLTRYGDVEEVWLDGAKG-EGKDMDYMFDAWFALIHQLQQRVVIFSDAGPDTRWVGDEAGVAGYTCWSPFNKSTVTIGH-IIPEYSRCGDPFGQDWVPAECDVSIRPGWFWHASEKPKNATTLL 301          

HSP 2 Score: 50.8322 bits (120), Expect = 2.995e-86
Identity = 20/31 (64.52%), Postives = 27/31 (87.10%), Query Frame = 3
Query:  639 PKKLSELLEIYYNSVGRNCVMLLNVPPNTTG 731
            PK  + LL+IYY SVGRNC+++LNVPPN++G
Sbjct:  294 PKNATTLLDIYYKSVGRNCLLILNVPPNSSG 324          
BLAST of DR908084 vs. ExPASy Swiss-Prot
Match: FUCO1_ARATH (Alpha-L-fucosidase 1 OS=Arabidopsis thaliana GN=FUC1 PE=1 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.971e-78
Identity = 128/221 (57.92%), Postives = 165/221 (74.66%), Query Frame = 1
Query:    1 LDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVTHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINIFSDAGPDVRWVGNEKGFAGSTCWSTINRTSLSIGNGSIVDYLSTGDAKGTDWLPAECDVSIRKGWFWHKSEHPRN*VSFL 663
            L+A+QWV  A ++G S +ILTAKHHDGFCLWPS++T++SV  S W++G GDVV  L +AAK  G+ +GLYLSPWDRH+  YG  L+YNE+YL+Q+ ELLT+YG+++E+W DGAKG    +M Y+F  WF+++ +LQ    IFSDAGPDVRW+G+E G AGSTCWS  NRT+  IG+ +   Y   GD  G DW+PAECDVSIR GWFWH SE P+  V  L
Sbjct:   81 LNASQWVQIAKDSGFSRVILTAKHHDGFCLWPSEYTDYSVKSSQWRNGAGDVVAGLASAAKEAGIGLGLYLSPWDRHEQCYGKTLEYNEFYLSQMTELLTKYGEIKEVWLDGAKGDGEKDMEYFFDTWFSLIHQLQPKAVIFSDAGPDVRWIGDEAGLAGSTCWSLFNRTNAKIGD-TEPSYSQEGDGYGQDWVPAECDVSIRPGWFWHASESPKPAVQLL 300          
The following BLAST results are available for this feature:
BLAST of DR908084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FUCO1_ORYSJ2.995e-8659.73Putative alpha-L-fucosidase 1 OS=Oryza sativa subs... [more]
FUCO1_ARATH2.971e-7857.92Alpha-L-fucosidase 1 OS=Arabidopsis thaliana GN=FU... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16212 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-32_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908084 ID=DR908084; Name=DR908084; organism=Citrus sinensis; type=EST; length=732bp
CTAGATGCAAACCAGTGGGTTAACACAGCGGCTGAAGCTGGGGTTTCGCT
GATGATTCTGACAGCAAAACACCACGATGGTTTTTGCCTTTGGCCTTCGA
AATTTACTGAGCATTCTGTGACTCATAGTCCCTGGAAACATGGACGCGGC
GACGTCGTGCAAGAGCTTGTCAATGCGGCTAAAGCCCGTGGAGTCGATGT
GGGGTTGTATTTATCACCCTGGGATCGCCATGATCCAAGATATGGTCATG
ACTTGCAATACAATGAATATTATTTAGCTCAGTTGCAAGAATTGCTCACA
AGATATGGGGATGTGAGGGAGATTTGGTTTGATGGAGCAAAAGGTTCAAA
TGCGCCAAACATGTCATATTATTTTACAGATTGGTTTGCGATGGTGAAGG
AGCTGCAGAGCTCAATTAACATTTTCTCCGACGCCGGTCCCGACGTTAGA
TGGGTTGGTAATGAAAAGGGCTTCGCCGGAAGCACTTGCTGGTCCACGAT
AAATCGAACTTCACTGTCAATCGGAAATGGAAGCATTGTTGACTATCTAA
GCACTGGCGATGCGAAAGGGACAGATTGGTTGCCAGCAGAATGTGACGTT
TCAATTAGAAAGGGGTGGTTTTGGCATAAATCCGAACACCCAAGAAATTG
AGTGAGCTTCTTGAGATTTACTATAACTCGGTGGGAAGAAATTGTGTGAT
GCTGCTCAATGTGCCGCCCAATACAACCGGGC
back to top