DR405034

Overview
NameDR405034
Unique NameDR405034
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405034 vs. ExPASy Swiss-Prot
Match: CI041_MOUSE (UPF0586 protein C9orf41 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.426e-46
Identity = 86/181 (47.51%), Postives = 119/181 (65.75%), Query Frame = 1
Query:   52 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPACAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRI 591
            D+DK++  ++  VRDW+  GK ERD CYKPI++E+   FP  R   S    LVPGAGLGRLA E++ LG+  QGNE+S++M+  S+F+LN      ++ +YPWIH   N+   +DQ+RP+  PD+ P        FSM  GDF E+Y   S+  AWD + TCFFIDTAHN+++YI+ I RI
Sbjct:  145 DMDKLKSTLKQFVRDWSETGKAERDACYKPIIKEIIKNFPKERWDPSKVNILVPGAGLGRLAWEVAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFSNNRRSADQIRPILFPDVDPHSLPPGSNFSMTAGDFQEIY---SECNAWDCIATCFFIDTAHNVIDYIDTIWRI 322          
BLAST of DR405034 vs. ExPASy Swiss-Prot
Match: CI041_RAT (UPF0586 protein C9orf41 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.844e-46
Identity = 86/181 (47.51%), Postives = 118/181 (65.19%), Query Frame = 1
Query:   52 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPACAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRI 591
            D+DK++  ++  VRDW+  GK ERD CYKPI++E+   FP  R   S    LVPGAGLGRLA EI+ LG+  QGNE+S++M+  S+F+LN      ++ +YPWIH   N+   +DQ+RP+  PD+ P        FSM  GDF E+Y   S+   WD + TCFFIDTAHN+++YI+ I RI
Sbjct:  145 DMDKLKSTLKQFVRDWSGTGKAERDACYKPIIKEIIKNFPKERWDPSKVNILVPGAGLGRLAWEIAMLGYACQGNEWSFFMLFSSNFVLNRCSEVDKYKLYPWIHQFSNNRRSADQIRPIFFPDVDPHSLPPGSNFSMTAGDFQEIY---SECNTWDCIATCFFIDTAHNVIDYIDTIWRI 322          
BLAST of DR405034 vs. ExPASy Swiss-Prot
Match: CI041_HUMAN (UPF0586 protein C9orf41 OS=Homo sapiens GN=C9orf41 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.461e-45
Identity = 84/181 (46.41%), Postives = 118/181 (65.19%), Query Frame = 1
Query:   52 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPACAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRI 591
            D+DK++  ++  VRDW+  GK ERD CY+PI++E+   FP  R   S    LVPGAGLGRLA EI+ LG+  QGNE+S++M+  S+F+LN      ++ +YPWIH   N+   +DQ+RP+  PD+ P        FSM  GDF E+Y   S+   WD + TCFFIDTAHN+++YI+ I +I
Sbjct:  154 DMDKLKSTLKQFVRDWSETGKAERDACYQPIIKEILKNFPKERWDPSKVNILVPGAGLGRLAWEIAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFSNNRRSADQIRPIFFPDVDPHSLPPGSNFSMTAGDFQEIY---SECNTWDCIATCFFIDTAHNVIDYIDTIWKI 331          
BLAST of DR405034 vs. ExPASy Swiss-Prot
Match: U586_DROME (UPF0586 protein CG11596 OS=Drosophila melanogaster GN=CG11596 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.056e-39
Identity = 79/186 (42.47%), Postives = 117/186 (62.90%), Query Frame = 1
Query:   37 NVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPA-CLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPACAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRI 591
            NV   D+D+ +  ++ I RDW+ EG  ER+Q YKPI++ + A F +   E      LVPGAGLGRL  E++ LG+  +GNEFSY+M+I S+F+LN  +   ++ +YPW+H   N+L   DQ+ PV  PD+ P        F +  GDF+EVY  P+   A++ V TCFFID A+N++++I  I +I
Sbjct:  119 NVRHGDMDQAQSTLKLIARDWSTEGALEREQSYKPIIDSIVAYFKHSDFELKDIKILVPGAGLGRLTYELACLGYSCEGNEFSYFMLIASNFVLNLCDNENKYVLYPWVHQYVNNLRREDQVAPVRFPDVCPLKNPPKGHFEIAAGDFLEVYKTPN---AYNCVATCFFIDCANNVIDFIRTIYKI 301          
BLAST of DR405034 vs. ExPASy Swiss-Prot
Match: YOI7_SCHPO (UPF0586 protein C1778.07 OS=Schizosaccharomyces pombe GN=SPBC1778.07 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.959e-37
Identity = 82/194 (42.27%), Postives = 119/194 (61.34%), Query Frame = 1
Query:    7 CDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKE-SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA-CAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEII 582
            C   D +   +V +  + KV   ++ I RDW+ E   ER   Y P +EEL++LFP+ S + S    LVPG+GLGRLA +I+  GF  QGNEFSY+M++ S FILN  +   ++ +YP+IHS  N +   DQ+R ++IPD  P+     ++ FSM  GDF+EVY       ++  V TCFFIDT  NI++Y++ I
Sbjct:   85 CSDFDQNELFHVNVDMMQKVSSTLKQIARDWSTECVEERRTTYAPFIEELNSLFPSDSIDRSKIRVLVPGSGLGRLAFDIAVEGFACQGNEFSYFMLLTSHFILNCVKQENQFLVYPYIHSFSNHVMRDDQVRSLNIPDAVPSQYLRNSQNFSMAAGDFLEVYGTEESRDSFQVVATCFFIDTTKNILDYLDTI 278          
BLAST of DR405034 vs. ExPASy Swiss-Prot
Match: U586_DICDI (UPF0586 protein OS=Dictyostelium discoideum GN=DDB_G0282239 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.482e-36
Identity = 84/190 (44.21%), Postives = 119/190 (62.63%), Query Frame = 1
Query:   55 VDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNR--SKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI---------HPACAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRI 591
            +D+++  IR +VR+W+ EGK ERDQ ++PI ++L  ++ +    + S      PGAGLGRL LEI+ LGF SQG E+S+ M+I S+F+LN  E   E+ I+P+IH   N L D DQLR V+IPD+         +PA       FSM  GDF +   + S    +D + TCFFIDTA NI+EY++ IS+I
Sbjct:  206 MDQLKSTIRQLVREWSEEGKLERDQAFEPIKQQLLEIYGHIPFQERSKIRVYSPGAGLGRLCLEIASLGFSSQGIEYSFMMLIVSNFMLNKVEKINEFKIHPYIHQTVNVLRDIDQLRTVTIPDVLSSELLPKNNPALE-----FSMSAGDFTKNIEENS----FDCICTCFFIDTAPNILEYVDCISKI 386          
BLAST of DR405034 vs. ExPASy Swiss-Prot
Match: YNJ2_YEAST (UPF0586 protein YNL092W OS=Saccharomyces cerevisiae GN=YNL092W PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.549e-22
Identity = 63/201 (31.34%), Postives = 101/201 (50.25%), Query Frame = 1
Query:   52 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPACAGITEG-FSMCGGDFVEVY--------------------SDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRI 591
            D+ K   ++  + R+W+AE  +ER+     ++  L  L P ++       L+PG G GRL +++S +G+  +GNEFSY+M++ S ++LN      +  IYP+IH   +     DQL P+ +PDI    +    G  S+C G FV+ Y                    S      + D VVT FFIDT  NI++Y++ I  +
Sbjct:   98 DMSKTCSLLTQVYREWSAEAISERNCLNSRLVPFLKTLSPPKAD-----ILIPGCGTGRLLVDLSRMGYNCEGNEFSYHMLLVSQYMLNAGLLQNQIIIYPFIHCFSHWKKIEDQLSPIKVPDIEAWSSNKGMGSMSICAGSFVDCYGRNQGTKISSHYTFSRRMQLSRAKAENSKDVVVTNFFIDTGSNILDYLDTIGHV 293          
The following BLAST results are available for this feature:
BLAST of DR405034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CI041_MOUSE3.426e-4647.51UPF0586 protein C9orf41 homolog OS=Mus musculus PE... [more]
CI041_RAT5.844e-4647.51UPF0586 protein C9orf41 homolog OS=Rattus norvegic... [more]
CI041_HUMAN6.461e-4546.41UPF0586 protein C9orf41 OS=Homo sapiens GN=C9orf41... [more]
U586_DROME4.056e-3942.47UPF0586 protein CG11596 OS=Drosophila melanogaster... [more]
YOI7_SCHPO4.959e-3742.27UPF0586 protein C1778.07 OS=Schizosaccharomyces po... [more]
U586_DICDI5.482e-3644.21UPF0586 protein OS=Dictyostelium discoideum GN=DDB... [more]
YNJ2_YEAST1.549e-2231.34UPF0586 protein YNL092W OS=Saccharomyces cerevisia... [more]
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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240C19 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240C19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405034 ID=DR405034; Name=DR405034; organism=Citrus sinensis; type=EST; length=593bp
CCGGCTTGTGACTGGTTGGATCCGTCAATTCAGTTGAATGTTCCGTTAGC
TGACGTTGATAAGGTCCGTTGTATAATAAGGAATATAGTTAGAGACTGGG
CAGCAGAGGGAAAAACAGAACGTGATCAATGCTACAAGCCTATTCTTGAA
GAACTTGACGCTCTATTCCCAAATCGATCCAAGGAGAGCCCCCCTGCCTG
TTTAGTCCCTGGTGCTGGTCTTGGGCGGCTGGCTTTGGAGATCTCCCATC
TAGGTTTTATAAGCCAGGGAAACGAATTTTCCTACTACATGATGATATGC
TCAAGTTTTATTCTTAATCATACTGAAACTGCTGGAGAGTGGAATATATA
TCCTTGGATCCACAGCAATTGCAATTCACTTTCTGACAGTGACCAACTTC
GTCCTGTTTCAATCCCAGACATTCATCCAGCATGTGCTGGGATTACTGAA
GGTTTTTCTATGTGTGGTGGTGACTTTGTTGAAGTCTACAGTGACCCAAG
CCAAGTAGGAGCTTGGGATGCAGTTGTAACTTGCTTCTTTATTGATACTG
CACATAACATTGTTGAATACATTGAAATAATATCAAGAATTCT
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