CX070089
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX070089 vs. ExPASy Swiss-Prot
Match: NOLC1_HUMAN (Nucleolar and coiled-body phosphoprotein 1 OS=Homo sapiens GN=NOLC1 PE=1 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 6.019e-20 Identity = 64/189 (33.86%), Postives = 98/189 (51.85%), Query Frame = -1 Query: 146 KSGRTESKNDRNK--TSEEDTTDKERKGSKKRKR--------LASEEKDSEPNDKMEVEESKRRKTEGSEELKINDDQVNGTDKNEEKSAPNKTRKKQANG-----SAEPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFN 667 K G+ ES N + +SEE+ + KGS + + L ++ + N + E EE K+ S+ + + N K E K + + N E ++ F+RV+ +E+E D R+ DNS+ AK GA +G +A +VL +G+ FRHEKTKKKRGSYRGG I +Q +S+KF+ Sbjct: 510 KKGKAESSNSSSSDDSSEEEEEKLKGKGSPRPQAPKANGTSALTAQNGKAAKNSEEEEEEKKKAAVVVSKSGSLKKRKQNEAAKEAETPQAKKIKLQTPNTFPKRKKGEKRASSPFRRVREEEIE-VDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFD 697
BLAST of CX070089 vs. ExPASy Swiss-Prot
Match: NOLC1_RAT (Nucleolar and coiled-body phosphoprotein 1 OS=Rattus norvegicus GN=Nolc1 PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.751e-19 Identity = 59/178 (33.15%), Postives = 93/178 (52.25%), Query Frame = -1 Query: 146 QKSGRTESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTEGSEELKIN---DDQVNGTDKNEEKSAPNKTRKKQANGSAEPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFN 670 + S E K ++K + + K + A +E + E D + +++ K ++ K N D+ K + PN K++ E ++ F+RV+ +E+E D R+ DNS+ AK GA +G +A +VL +G+ FRHEKTKKKRGSYRGG I +Q +SVKF+ Sbjct: 529 EDSSEEEKKKPKSKATPKPQAGKANGVPASQNGKAGKESEEEEEDTEQNKKAAGTKPGSGKKRKHNETADEAATPQSKKVKLQTPNTFPKRK---KGEKRASSPFRRVREEEIE-VDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSVKFD 702
BLAST of CX070089 vs. ExPASy Swiss-Prot
Match: SRP40_YEAST (Suppressor protein SRP40 OS=Saccharomyces cerevisiae GN=SRP40 PE=1 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 7.614e-15 Identity = 57/180 (31.67%), Postives = 86/180 (47.78%), Query Frame = -1 Query: 149 SGRTESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTEGSEELKINDDQVNGTDKNEEKSAPNKTRKKQAN------GSAEPKSV--KAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKF 664 S ++S +D + +S+ D++ S + E S+ +D +S ++E ++ + T + +S P+ + AN G+ E K K F RV ++ F L DN+Y GA +G KA E LG+VRG+DF K K KRGSYRGG I L+S S KF Sbjct: 229 SSSSDSDSDSDSSSDSDSSGSSDSSSSSDSS-SDESTSSDSSDSDSDSDSGSSSELETKEATADESKAEETPASSNESTPSASSSSSANKLNIPAGTDEIKEGQRKHFSRVDRSKINFEAWELTDNTY---KGAAGTWGEKANEKLGRVRGKDFTKNKNKMKRGSYRGGSITLESGSYKF 404
BLAST of CX070089 vs. ExPASy Swiss-Prot
Match: YNY5_SCHPO (LisH domain-containing protein C1711.05 OS=Schizosaccharomyces pombe GN=SPBC1711.05 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.755e-11 Identity = 54/194 (27.84%), Postives = 79/194 (40.72%), Query Frame = -1 Query: 149 EIGEQKSGRTESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTEGSEELKINDDQVNGTDKNEEKSAPN--------KTRKKQANGSAEPKSVKAFQRVKV--------DEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKF 682 E + S + + +D S D++D E + S + S DS+ + E S T E N T E S + K+ K++ S K+ + K + +F L+DNS+ +D YG A L RG+ FR EK KKKRGSYRGG+I+ + S KF Sbjct: 264 ESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSA--QSSTNSTSSEESTSVKDEDSSKIHDKSLKRKHEDDESSTSTKSSRTTKTPFTRVGDPSQWDFASPALRDNSFNFEDD----YGTLANRDLIVTRGKGFRQEKNKKKRGSYRGGRINTEVRSFKF 451 The following BLAST results are available for this feature:
BLAST of CX070089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX070089 ID=CX070089; Name=CX070089; organism=Citrus sinensis; type=EST; length=835bpback to top |