DR403912

Overview
NameDR403912
Unique NameDR403912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig440 contig Csv1_Contig440:822..1436. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSJ (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 2.232e-104
Identity = 174/190 (91.58%), Postives = 183/190 (96.32%), Query Frame = 2 
Query:    5 GQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRW 574
            GQSP+FIA+TFM QGGIPP+TNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRP FKGSAPINLSDRLNQVLRWALG +EILLSRHCPIWYGYNGRLKLLERLAYINTIVYP+TS+PLIAYC LPA CLLTNKFIIPEISN+A M+FILLF SIFATGILE+RW
Sbjct:  718 GQSPIFIASTFMTQGGIPPSTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPCFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPITSIPLIAYCVLPAICLLTNKFIIPEISNYAGMFFILLFASIFATGILELRW 907

HSP 2 Score: 26.9498 bits (58), Expect = 2.232e-104
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1 
Query:  580 GLVFEDWWRNEQ 615
            G+  EDWWRNEQ
Sbjct:  909 GVGIEDWWRNEQ 920
[Close]
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSI (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 2.232e-104
Identity = 174/190 (91.58%), Postives = 183/190 (96.32%), Query Frame = 2 
Query:    5 GQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRW 574
            GQSP+FIA+TFM QGGIPP+TNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRP FKGSAPINLSDRLNQVLRWALG +EILLSRHCPIWYGYNGRLKLLERLAYINTIVYP+TS+PLIAYC LPA CLLTNKFIIPEISN+A M+FILLF SIFATGILE+RW
Sbjct:  718 GQSPIFIASTFMTQGGIPPSTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPCFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPITSIPLIAYCVLPAICLLTNKFIIPEISNYAGMFFILLFASIFATGILELRW 907

HSP 2 Score: 26.9498 bits (58), Expect = 2.232e-104
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1 
Query:  580 GLVFEDWWRNEQ 615
            G+  EDWWRNEQ
Sbjct:  909 GVGIEDWWRNEQ 920
[Close]
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CESA1_ARATH (Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 3.800e-104
Identity = 173/190 (91.05%), Postives = 185/190 (97.37%), Query Frame = 2 
Query:    5 GQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRW 574
            GQSPVFIAATFMEQGGIPPTTNPA+LLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYC PPRPAFKGSAPINLSDRLNQVLRWALG IEILLSRHCPIWYGY+GRL+LLER+AYINTIVYP+TS+PLIAYC LPAFCL+T++FIIPEISN+AS+WFILLFISI  TGILE+RW
Sbjct:  723 GQSPVFIAATFMEQGGIPPTTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCNPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYHGRLRLLERIAYINTIVYPITSIPLIAYCILPAFCLITDRFIIPEISNYASIWFILLFISIAVTGILELRW 912

HSP 2 Score: 27.335 bits (59), Expect = 3.800e-104
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1 
Query:  580 GLVFEDWWRNEQ 615
            G+  EDWWRNEQ
Sbjct:  914 GVSIEDWWRNEQ 925
[Close]
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CESAA_ARATH (Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 6.554e-98
Identity = 164/190 (86.32%), Postives = 179/190 (94.21%), Query Frame = 2 
Query:    5 GQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRW 574
            GQSPVFIAATFMEQGG+P TTNP +LLKEAIHVISCGYE KT+WGKEIGWIYGSVTEDILTGFKMHARGWISIYC+P RPAFKGSAPINLSDRLNQVLRWALG IEILLSRHCPIWYGYNGRLKLLER+AYINTIVYP+TS+PL+AYC LPAFCL+TN FIIPEISN AS+ F+LLF SI+A+ ILE++W
Sbjct:  710 GQSPVFIAATFMEQGGLPSTTNPLTLLKEAIHVISCGYEAKTDWGKEIGWIYGSVTEDILTGFKMHARGWISIYCVPSRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLLAYCMLPAFCLITNTFIIPEISNLASLCFMLLFASIYASAILELKW 899

HSP 2 Score: 25.7942 bits (55), Expect = 6.554e-98
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 1 
Query:  583 LVFEDWWRNEQ 615
            +  EDWWRNEQ
Sbjct:  902 VALEDWWRNEQ 912
[Close]
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 7.211e-94
Identity = 158/190 (83.16%), Postives = 168/190 (88.42%), Query Frame = 2 
Query:    5 GQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRW 574
            GQS  F+A+T ME GG+P +  P SLLKEAIHVISCGYEDKTEWG EIGWIYGSVTEDILTGFKMHARGW SIYCMP RPAFKGSAPINLSDRLNQVLRWALG +EIL SRHCPIWYGY GRLK LER AYINT +YPLTS+PL+ YC LPA CLLT KFIIPEISNFAS+WFI LFISIFATGILE+RW
Sbjct:  724 GQSAAFVASTLMEYGGVPQSATPESLLKEAIHVISCGYEDKTEWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYINTTIYPLTSIPLLIYCVLPAICLLTGKFIIPEISNFASIWFISLFISIFATGILEMRW 913

HSP 2 Score: 24.2534 bits (51), Expect = 7.211e-94
Identity = 7/12 (58.33%), Postives = 10/12 (83.33%), Query Frame = 1 
Query:  580 GLVFEDWWRNEQ 615
            G+  ++WWRNEQ
Sbjct:  915 GVGIDEWWRNEQ 926
[Close]
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 3.554e-93
Identity = 156/190 (82.11%), Postives = 169/190 (88.95%), Query Frame = 2 
Query:    5 GQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRW 574
            GQS VF+A+T ME GG+P +  P SLLKEAIHVISCGYEDK++WG EIGWIYGSVTEDILTGFKMHARGW SIYCMP RPAFKGSAPINLSDRLNQVLRWALG +EIL SRHCPIWYGY GRLK LER AYINT +YPLTS+PL+ YC LPA CLLT KFIIPEISNFAS+WFI LF+SIFATGILE+RW
Sbjct:  716 GQSSVFVASTLMEYGGVPQSATPESLLKEAIHVISCGYEDKSDWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYINTTIYPLTSIPLLLYCILPAICLLTGKFIIPEISNFASIWFISLFLSIFATGILEMRW 905

HSP 2 Score: 24.2534 bits (51), Expect = 3.554e-93
Identity = 7/12 (58.33%), Postives = 10/12 (83.33%), Query Frame = 1 
Query:  580 GLVFEDWWRNEQ 615
            G+  ++WWRNEQ
Sbjct:  907 GVGIDEWWRNEQ 918
[Close]
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 3.554e-93
Identity = 156/190 (82.11%), Postives = 169/190 (88.95%), Query Frame = 2 
Query:    5 GQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRW 574
            GQS VF+A+T ME GG+P +  P SLLKEAIHVISCGYEDK++WG EIGWIYGSVTEDILTGFKMHARGW SIYCMP RPAFKGSAPINLSDRLNQVLRWALG +EIL SRHCPIWYGY GRLK LER AYINT +YPLTS+PL+ YC LPA CLLT KFIIPEISNFAS+WFI LF+SIFATGILE+RW
Sbjct:  716 GQSSVFVASTLMEYGGVPQSATPESLLKEAIHVISCGYEDKSDWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYINTTIYPLTSIPLLLYCILPAICLLTGKFIIPEISNFASIWFISLFLSIFATGILEMRW 905

HSP 2 Score: 24.2534 bits (51), Expect = 3.554e-93
Identity = 7/12 (58.33%), Postives = 10/12 (83.33%), Query Frame = 1 
Query:  580 GLVFEDWWRNEQ 615
            G+  ++WWRNEQ
Sbjct:  907 GVGIDEWWRNEQ 918
[Close]
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 336.65 bits (862), Expect = 1.752e-92
Identity = 151/190 (79.47%), Postives = 170/190 (89.47%), Query Frame = 2 
Query:    5 GQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRW 574
            GQS VF+A+T ME GG+PP+  P +LLKEAIHVISCGYEDK++WG EIGWIYGSVTEDILTGFKMHARGW SIYCMP  PAFKGSAPINLSDRLNQVLRWALG +EIL SRHCPIWYGYNGRLK LER AY+NT +YP+TS+PL+ YCTLPA CL TN+FIIP+ISN AS+WF+ LF+SIFATGILE+RW
Sbjct:  708 GQSAVFVASTLMENGGVPPSATPENLLKEAIHVISCGYEDKSDWGMEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKLPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYNGRLKFLERFAYVNTTIYPITSIPLLMYCTLPAVCLFTNQFIIPQISNIASIWFLSLFLSIFATGILEMRW 897

HSP 2 Score: 24.2534 bits (51), Expect = 1.752e-92
Identity = 7/12 (58.33%), Postives = 10/12 (83.33%), Query Frame = 1 
Query:  580 GLVFEDWWRNEQ 615
            G+  ++WWRNEQ
Sbjct:  899 GVGIDEWWRNEQ 910
[Close]
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 5.437e-90
Identity = 148/190 (77.89%), Postives = 169/190 (88.95%), Query Frame = 2 
Query:    5 GQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRW 574
            G SPVFIA+T ME GG+P  TN +SL+KEAIHVISCGYE+KTEWGKEIGWIYGSVTEDILTGF+MH RGW S+YCMP RPAFKGSAPINLSDRL+QVLRWALG +EI  SRHCP+WY + G+LK+LERLAYINTIVYP TS+PL+AYCT+PA CLLT KFIIP I+NFAS+WF+ LF+SI AT ILE+RW
Sbjct:  691 GMSPVFIASTLMENGGLPEATNTSSLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFRMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPLWYAWGGKLKILERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTINNFASIWFLALFLSIIATAILELRW 880
[Close]
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CESA7_ORYSJ (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 4.270e-88
Identity = 145/192 (75.52%), Postives = 166/192 (86.46%), Query Frame = 2 
Query:    5 GQSPVFIAATFMEQGGIPP--TTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRW 574
            GQSPVFIA+T +E GG+P     +PA+L+KEAIHVISCGYE+KTEWGKEIGWIYGSVTEDILTGFKMH RGW S+YC P R AFKGSAPINLSDRL+QVLRWALG +EI +SRHCP+WY Y GRLK LER AY NTIVYP TS+PL+AYCT+PA CLLT KFIIP ++N AS+WFI LF+SI ATG+LE+RW
Sbjct:  703 GQSPVFIASTLVEDGGLPQGAAADPAALIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCTPARAAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAYGGRLKWLERFAYTNTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLNNLASIWFIALFLSIIATGVLELRW 894

HSP 2 Score: 27.335 bits (59), Expect = 4.270e-88
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1 
Query:  580 GLVFEDWWRNEQ 615
            G+  EDWWRNEQ
Sbjct:  896 GVSIEDWWRNEQ 907
The following BLAST results are available for this feature:
BLAST of DR403912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CESA1_ORYSJ2.232e-10491.58Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA1_ORYSI2.232e-10491.58Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA1_ARATH3.800e-10491.05Cellulose synthase A catalytic subunit 1 [UDP-form... [more]
CESAA_ARATH6.554e-9886.32Probable cellulose synthase A catalytic subunit 10... [more]
CESA8_ORYSJ7.211e-9483.16Probable cellulose synthase A catalytic subunit 8 ... [more]
CESA2_ORYSJ3.554e-9382.11Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA2_ORYSI3.554e-9382.11Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA3_ARATH1.752e-9279.47Cellulose synthase A catalytic subunit 3 [UDP-form... [more]
CESA4_ARATH5.437e-9077.89Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA7_ORYSJ4.270e-8875.52Cellulose synthase A catalytic subunit 7 [UDP-form... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAH-PNP1246K12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246K12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403912 ID=DR403912; Name=DR403912; organism=Citrus sinensis; type=EST; length=617bp
GGGTGGTCAATCCCCAGTTTTCATTGCAGCTACCTTCATGGAACAGGGAG
GCATTCCACCGACAACTAATCCTGCAAGTCTTCTAAAGGAAGCAATCCAT
GTTATTAGTTGTGGTTATGAGGACAAGACTGAATGGGGCAAAGAGATTGG
ATGGATCTATGGTTCTGTGACTGAAGATATCCTGACTGGGTTCAAGATGC
ATGCTCGTGGTTGGATATCAATCTATTGCATGCCACCACGCCCAGCATTT
AAGGGGTCTGCTCCCATAAATCTTTCTGATCGTTTGAACCAGGTTCTTCG
ATGGGCCTTGGGGCCAATTGAGATTTTGCTGAGCAGGCATTGCCCTATAT
GGTATGGCTACAATGGGAGATTGAAGCTTTTGGAGAGACTGGCGTACATT
AACACTATTGTCTACCCACTGACCTCCGTCCCACTAATTGCTTACTGCAC
GCTTCCTGCTTTTTGCCTTCTTACTAATAAATTCATCATTCCAGAGATAA
GCAACTTTGCTAGCATGTGGTTTATTCTACTTTTCATTTCCATTTTTGCT
ACTGGAATACTGGAGATTAGATGGAGGTGGGGTTGGTATTTGAGGACTGG
TGGAGGAATGAACAGTT
back to top