DR403314

Overview
NameDR403314
Unique NameDR403314
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12741 contig Csv1_Contig12741:32..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403314 vs. ExPASy Swiss-Prot
Match: RNF5_CAEEL (RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.384e-28
Identity = 73/189 (38.62%), Postives = 96/189 (50.79%), Query Frame = 1
Query:  109 TSRSAQNPYSNNNSNSEAGNFECNICFDLTQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKSSTDPKSKSIPGVNIPNRPTGQRPETAPPPEPSXXXXXXXXXXXXXLCGFAPMAAARFGNFTLSAAFGGLIPPLFNLQVHGFPDPTMYGPAASFPYGFTNSFHGGHAHG 675
            T   ++ P S++N + E+  FECNIC D  +D +V+LCGHLFCWPCL +WL    N + CPVCK+ I+  K+VP+YGRG  S+DP+ K      +P RP GQR E    P P              + G  P     FG  T++    GL P +F L       P + G    FP  F  SF G    G
Sbjct:    5 TKAPSEEPTSSSNKD-ESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSAIDGNKVVPIYGRGGDSSDPRKK------VPPRPKGQRSE----PPPQSFAGFNWGGDGGMMGGGGPNVHFSFGIGTVN----GLFPLMFML-------PFIQG---IFPLSFVASFFGNGNQG 168          
BLAST of DR403314 vs. ExPASy Swiss-Prot
Match: RN185_RAT (RING finger protein 185 OS=Rattus norvegicus GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26
Identity = 57/121 (47.11%), Postives = 75/121 (61.98%), Query Frame = 1
Query:   91 SSFGESTSRSAQN-----PYSNNNSNSEAGN----FECNICFDLTQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPKSKSIPGVNIPNRPTGQRPE 423
            +S G S S S +N     P  ++N   E+G     FECNIC D  +D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DP+ K+      P RP GQRPE
Sbjct:    2 ASKGPSASASTENSSAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 116          
BLAST of DR403314 vs. ExPASy Swiss-Prot
Match: RN185_MOUSE (RING finger protein 185 OS=Mus musculus GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26
Identity = 57/121 (47.11%), Postives = 75/121 (61.98%), Query Frame = 1
Query:   91 SSFGESTSRSAQN-----PYSNNNSNSEAGN----FECNICFDLTQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPKSKSIPGVNIPNRPTGQRPE 423
            +S G S S S +N     P  ++N   E+G     FECNIC D  +D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DP+ K+      P RP GQRPE
Sbjct:    2 ASKGPSASASTENSNAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 116          
BLAST of DR403314 vs. ExPASy Swiss-Prot
Match: RN185_PONAB (RING finger protein 185 OS=Pongo abelii GN=RNF185 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.194e-25
Identity = 57/121 (47.11%), Postives = 75/121 (61.98%), Query Frame = 1
Query:   91 SSFGESTSRSAQN-----PYSNNNSNSEAGN----FECNICFDLTQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPKSKSIPGVNIPNRPTGQRPE 423
            +S G S S S +N     P  ++N   E+G     FECNIC D  +D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DP+ K+      P RP GQRPE
Sbjct:    2 ASKGPSASSSPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 116          
BLAST of DR403314 vs. ExPASy Swiss-Prot
Match: RN185_HUMAN (RING finger protein 185 OS=Homo sapiens GN=RNF185 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.194e-25
Identity = 57/121 (47.11%), Postives = 75/121 (61.98%), Query Frame = 1
Query:   91 SSFGESTSRSAQN-----PYSNNNSNSEAGN----FECNICFDLTQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPKSKSIPGVNIPNRPTGQRPE 423
            +S G S S S +N     P  ++N   E+G     FECNIC D  +D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DP+ K+      P RP GQRPE
Sbjct:    2 ASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 116          
BLAST of DR403314 vs. ExPASy Swiss-Prot
Match: RN185_DANRE (RING finger protein 185 OS=Danio rerio GN=rnf185 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.194e-25
Identity = 56/120 (46.67%), Postives = 75/120 (62.50%), Query Frame = 1
Query:   88 ASSFGESTSRSAQNPYSNNNSNSEAGN-------FECNICFDLTQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPKSKSIPGVNIPNRPTGQRPE 423
            A+S   S+S S+    +N  S  E+G        FECNIC D ++D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DP+ K+      P RP GQRPE
Sbjct:    5 AASESSSSSSSSSAGAANGQSAGESGGGGAQDSTFECNICLDTSKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 118          
BLAST of DR403314 vs. ExPASy Swiss-Prot
Match: RN185_CHICK (RING finger protein 185 OS=Gallus gallus GN=RNF185 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.036e-25
Identity = 54/112 (48.21%), Postives = 73/112 (65.18%), Query Frame = 1
Query:   91 SSFGESTSRSAQNPYSNNNSNSEAGNFECNICFDLTQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPKSKSIPGVNIPNRPTGQRPE 423
            SS    TS S+ +  + +N+N +   FECNIC D  +D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DP+ K+      P RP GQRPE
Sbjct:   14 SSSTGGTSGSSSSNGAGDNTNQD-NTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 118          
BLAST of DR403314 vs. ExPASy Swiss-Prot
Match: RNF5_RAT (E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.613e-22
Identity = 46/95 (48.42%), Postives = 62/95 (65.26%), Query Frame = 1
Query:  139 NNNSNSEAGNFECNICFDLTQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRG-KSSTDPKSKSIPGVNIPNRPTGQRP 420
            N      +  FECNIC +  ++ +V++CGHL+CWPCL++WL    + +ECPVCKA I  EK+VPLYGRG +   DP+ K+      P RP GQRP
Sbjct:   15 NRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGSQKPQDPRLKT------PPRPQGQRP 103          
BLAST of DR403314 vs. ExPASy Swiss-Prot
Match: RNF5_MOUSE (E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.613e-22
Identity = 46/95 (48.42%), Postives = 62/95 (65.26%), Query Frame = 1
Query:  139 NNNSNSEAGNFECNICFDLTQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRG-KSSTDPKSKSIPGVNIPNRPTGQRP 420
            N      +  FECNIC +  ++ +V++CGHL+CWPCL++WL    + +ECPVCKA I  EK+VPLYGRG +   DP+ K+      P RP GQRP
Sbjct:   15 NRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGSQKPQDPRLKT------PPRPQGQRP 103          
BLAST of DR403314 vs. ExPASy Swiss-Prot
Match: RNF5_HUMAN (E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.107e-22
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 1
Query:  130 PYSNNNSNSEAG-NFECNICFDLTQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRG-KSSTDPKSKSIPGVNIPNRPTGQRP 420
            P   N     AG  FECNIC +  ++ +V++CGHL+CWPCL++WL      +ECPVCKA I  EK+VPLYGRG +   DP+ K+      P RP GQRP
Sbjct:   11 PEGPNRERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRGSQKPQDPRLKT------PPRPQGQRP 103          
The following BLAST results are available for this feature:
BLAST of DR403314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RNF5_CAEEL4.384e-2838.62RING finger protein 5 OS=Caenorhabditis elegans GN... [more]
RN185_RAT5.359e-2647.11RING finger protein 185 OS=Rattus norvegicus GN=Rn... [more]
RN185_MOUSE5.359e-2647.11RING finger protein 185 OS=Mus musculus GN=Rnf185 ... [more]
RN185_PONAB1.194e-2547.11RING finger protein 185 OS=Pongo abelii GN=RNF185 ... [more]
RN185_HUMAN1.194e-2547.11RING finger protein 185 OS=Homo sapiens GN=RNF185 ... [more]
RN185_DANRE1.194e-2546.67RING finger protein 185 OS=Danio rerio GN=rnf185 P... [more]
RN185_CHICK2.036e-2548.21RING finger protein 185 OS=Gallus gallus GN=RNF185... [more]
RNF5_RAT1.613e-2248.42E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegi... [more]
RNF5_MOUSE1.613e-2248.42E3 ubiquitin-protein ligase RNF5 OS=Mus musculus G... [more]
RNF5_HUMAN2.107e-2249.49E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244J03 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244J03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403314 ID=DR403314; Name=DR403314; organism=Citrus sinensis; type=EST; length=693bp
GGGGGACTTTGTGGATCGATCTATTCGCAAATCGGTCGGTCGATTTCTTC
ATTTNNNAGGGATTTGGGTTCTTGAAATCTAGTGATGGCGAGTAGTTTTG
GGGAATCAACAAGCAGGTCGGCCCAAAACCCTTATTCTAACAACAATAGT
AATAGTGAAGCTGGTAACTTCGAATGCAATATTTGCTTTGACTTAACTCA
AGATCCTATTGTAACTTTGTGCGGTCATCTTTTCTGCTGGCCCTGCCTTT
ACAAATGGCTCCACGGTCACTCAAATTATCGGGAGTGCCCAGTGTGTAAG
GCCACAATTGAGGAGGAGAAGCTCGTGCCCTTGTATGGCAGGGGAAAATC
ATCAACTGACCCCAAATCAAAATCCATCCCTGGAGTTAATATTCCGAACC
GTCCTACAGGGCAGAGGCCTGAAACTGCTCCTCCACCAGAGCCAAGTCAT
TTTCAGCATCAACATGGATTTGGCTTTATGGGAGGCTTATGTGGGTTTGC
TCCAATGGCCGCAGCAAGATTTGGGAATTTCACTTTATCTGCAGCTTTTG
GTGGCCTCATCCCTCCATTATTTAATCTTCAAGTGCATGGATTCCCAGAT
CCTACCATGTATGGTCCAGCTGCCAGCTTTCCTTATGGGTTTACGAATTC
GTTTCATGGTGGTCATGCACATGGATATCCACAGCATACGGGT
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