DN621615

Overview
NameDN621615
Unique NameDN621615
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621615 vs. ExPASy Swiss-Prot
Match: LCYE_SOLLC (Lycopene epsilon cyclase, chloroplastic OS=Solanum lycopersicum GN=CRTL-E-1 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.523e-62
Identity = 118/148 (79.73%), Postives = 131/148 (88.51%), Query Frame = -2
Query:  248 SMVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLRKCLIRHLVSDPTGATMVRTYLT 691
            SMVHPATGYSVVRSLSEAP  AS +A IL+  +S+  LT   S  +IS QAWNTLWPQERKRQR+FFLFGLALILQLDIEGIR+FFR FFR+PKWMW GFLGSSLSSADL+LFAFYMFIIAPND+RK LIRHL+SDPTGAT++RTYLT
Sbjct:  379 SMVHPATGYSVVRSLSEAPKCASVLANILRQHYSKNMLT-SSSIPSISTQAWNTLWPQERKRQRSFFLFGLALILQLDIEGIRSFFRAFFRVPKWMWQGFLGSSLSSADLMLFAFYMFIIAPNDMRKGLIRHLLSDPTGATLIRTYLT 525          
BLAST of DN621615 vs. ExPASy Swiss-Prot
Match: LCYE_ARATH (Lycopene epsilon cyclase, chloroplastic OS=Arabidopsis thaliana GN=LUT2 PE=1 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.061e-58
Identity = 110/147 (74.83%), Postives = 125/147 (85.03%), Query Frame = -2
Query:  251 SMVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLRKCLIRHLVSDPTGATMVRTYL 691
            SMVHPATGYSVVRSLSEAP YAS IA IL+ +      T +Q N NIS QAW+TLWP ERKRQRAFFLFGLALI+Q D EGIR+FFRTFFRLPKWMW GFLGS+L+S DL+LFA YMF+I+PN+LRK LI HL+SDPTGATM++TYL
Sbjct:  382 SMVHPATGYSVVRSLSEAPKYASVIAEILREE------TTKQINSNISRQAWDTLWPPERKRQRAFFLFGLALIVQFDTEGIRSFFRTFFRLPKWMWQGFLGSTLTSGDLVLFALYMFVISPNNLRKGLINHLISDPTGATMIKTYL 522          
BLAST of DN621615 vs. ExPASy Swiss-Prot
Match: LCYB_CAPAN (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Capsicum annuum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.079e-22
Identity = 55/125 (44.00%), Postives = 71/125 (56.80%), Query Frame = -2
Query:  314 MVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLR 688
            MVHP+TGY V R+L+ AP  A+AI   L  + S        S + +S   W  LWP ER+RQR FF FG+ ++L+LD+   R FF  FF L    WHGFL S L   +LI+F   +F  A N  R
Sbjct:  358 MVHPSTGYMVARTLAAAPVVANAIIQYLSSERSH-------SGDELSAAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELIVFGLSLFSHASNTSR 475          
BLAST of DN621615 vs. ExPASy Swiss-Prot
Match: LCYB_NARPS (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=LCY1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.037e-21
Identity = 54/122 (44.26%), Postives = 70/122 (57.38%), Query Frame = -2
Query:  323 MVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPN 688
            MVHP+TGY V R+L+ AP  A++I   L  D          S  ++S   W  LWP ER+RQR FF FG+ ++L+LD+EG R FF  FF L    WHGFL S L   +L+ F   +F  A N
Sbjct:  363 MVHPSTGYMVARTLAAAPIVANSIVQYLVSDSGL-------SGNDLSADVWKDLWPIERRRQREFFCFGMDILLKLDLEGTRRFFDAFFDLEPRYWHGFLSSRLFLPELVPFGLSLFSHASN 477          
BLAST of DN621615 vs. ExPASy Swiss-Prot
Match: LCYB_SOLLC (Lycopene beta cyclase, chloroplastic OS=Solanum lycopersicum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.769e-21
Identity = 55/125 (44.00%), Postives = 70/125 (56.00%), Query Frame = -2
Query:  314 MVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLR 688
            MVHP+TGY V R+L+ AP  A+AI   L  + S        S   +S   W  LWP ER+RQR FF FG+ ++L+LD+   R FF  FF L    WHGFL S L   +LI+F   +F  A N  R
Sbjct:  360 MVHPSTGYMVARTLAAAPVVANAIIQYLGSERSH-------SGNELSTAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELIVFGLSLFSHASNTSR 477          
BLAST of DN621615 vs. ExPASy Swiss-Prot
Match: LCYB_ARATH (Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana GN=LCY1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.310e-21
Identity = 53/125 (42.40%), Postives = 72/125 (57.60%), Query Frame = -2
Query:  314 MVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLR 688
            MVHP+TGY V R+L+ AP  A+AI   L    S     +    + +S + W  LWP ER+RQR FF FG+ ++L+LD++  R FF  FF L    WHGFL S L   +L++F   +F  A N  R
Sbjct:  359 MVHPSTGYMVARTLAAAPIVANAIVRYLGSPSS-----NSLRGDQLSAEVWRDLWPIERRRQREFFCFGMDILLKLDLDATRRFFDAFFDLQPHYWHGFLSSRLFLPELLVFGLSLFSHASNTSR 478          
BLAST of DN621615 vs. ExPASy Swiss-Prot
Match: LCYB_TOBAC (Lycopene beta cyclase, chloroplastic OS=Nicotiana tabacum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.357e-20
Identity = 52/125 (41.60%), Postives = 69/125 (55.20%), Query Frame = -2
Query:  314 MVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLR 688
            +VHP+TGY V R+L+ AP  A+AI + L  +        +     +S   W  LWP ER+RQR FF FG+ ++L+LD+   R FF  FF L    WHGFL S L   +LI F   +F  A N  R
Sbjct:  360 LVHPSTGYMVARTLAAAPVVANAIIHYLGSEK-------DLLGNELSAAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLYLPELIFFGLSLFSRASNTSR 477          
BLAST of DN621615 vs. ExPASy Swiss-Prot
Match: CCS_CITSI (Capsanthin/capsorubin synthase, chromoplast OS=Citrus sinensis GN=CCS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.656e-19
Identity = 53/126 (42.06%), Postives = 72/126 (57.14%), Query Frame = -2
Query:  314 MVHPATGYSVVRSLSEAPNYASAIAYILKHDHS-RGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLR 688
            ++HPATGY V R+++ AP  A AIA  L      RGR  H++         WN LWP +R+  R F+ FG+  +L+LD++G R FF  FF L  + WHGFL S LS A+L   +  +F  A N  R
Sbjct:  363 LIHPATGYMVARTMALAPALADAIAECLGSTRMIRGRPLHQK--------VWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPYYWHGFLSSRLSLAELAGLSLSLFGHASNSSR 480          
BLAST of DN621615 vs. ExPASy Swiss-Prot
Match: LCYB_SYNE7 (Lycopene beta cyclase OS=Synechococcus elongatus (strain PCC 7942) GN=crtL PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.643e-17
Identity = 50/126 (39.68%), Postives = 70/126 (55.56%), Query Frame = -2
Query:  314 SMVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLR 691
            SMVHPA+GY V   L  AP+ A+AIA  L    S        +   ++ QAW  LWP E+ R+   + FGL  +++     +   F+TFF LPK  W+GFL ++LS  +LI     +F  APND+R
Sbjct:  272 SMVHPASGYMVGALLRRAPDLANAIAAGLNASSSL-------TTAELATQAWRGLWPTEKIRKHYIYQFGLEKLMRFSEAQLNHHFQTFFGLPKEQWYGFLTNTLSLPELIQAMLRLFAQAPNDVR 390          
BLAST of DN621615 vs. ExPASy Swiss-Prot
Match: CCS_CAPAN (Capsanthin/capsorubin synthase, chromoplast OS=Capsicum annuum GN=CCS PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.508e-17
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = -2
Query:  323 MVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPN 688
            +VHP++GY V RS++ AP  A AI   L         T       +  + WN LWP +R+R R  + FG+  +L+LD+EG R  F  FF +    WHGFL S LS  +L + + Y+F  A N
Sbjct:  358 IVHPSSGYMVARSMALAPVLAEAIVESLGS-------TRMIRGSQLYHRVWNGLWPSDRRRVRECYCFGMETLLKLDLEGTRRLFDAFFDVDPKYWHGFLSSRLSVKELAVLSLYLFGHASN 472          
The following BLAST results are available for this feature:
BLAST of DN621615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LCYE_SOLLC3.523e-6279.73Lycopene epsilon cyclase, chloroplastic OS=Solanum... [more]
LCYE_ARATH1.061e-5874.83Lycopene epsilon cyclase, chloroplastic OS=Arabido... [more]
LCYB_CAPAN6.079e-2244.00Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
LCYB_NARPS1.037e-2144.26Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
LCYB_SOLLC1.769e-2144.00Lycopene beta cyclase, chloroplastic OS=Solanum ly... [more]
LCYB_ARATH2.310e-2142.40Lycopene beta cyclase, chloroplastic OS=Arabidopsi... [more]
LCYB_TOBAC4.357e-2041.60Lycopene beta cyclase, chloroplastic OS=Nicotiana ... [more]
CCS_CITSI1.656e-1942.06Capsanthin/capsorubin synthase, chromoplast OS=Cit... [more]
LCYB_SYNE72.643e-1739.68Lycopene beta cyclase OS=Synechococcus elongatus (... [more]
CCS_CAPAN4.508e-1738.52Capsanthin/capsorubin synthase, chromoplast OS=Cap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06P08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621615 ID=DN621615; Name=DN621615; organism=Citrus sinensis; type=EST; length=692bp
ATACTGTAGGAACATATAAGAATCTGATTCAAAGCATCTCCACGTCTAAC
ACTGGCTTTGTAAACAGTAGCATCAAGTTTTGCATTTTGAAAAAAAATAA
AAATAAAAATAAAAAAGGGCTTCATTTGTCAAATTAACAGTTTACAGTAT
ACATGGAGTATATATACAAGCTCATTATGTGTCACGTATGGCAATCCAAA
ATATACCAAACAAGGGCTGAAATATGGAAAATACAAACTAACTATAAAGT
CAGGTATGTTCTTACCATAGTTGCTCCAGTTGGATCTGAAACTAGATGTC
TGATAAGGCACTTTCTCAGATCATTTGGTGCTATAATAAACATATAGAAG
GCAAATAGAATGAGATCGGCTGATGAGAGACTAGAACCAAGGAAACCGTG
CCACATCCACTTGGGTAATCGGAAGAAAGTGCGAAAGAATGTCCTGATGC
CCTCAATATCCAGTTGCAAAATGAGTGCTAGTCCAAAGAGGAAAAAAGCT
CTTTGGCGCTTCCTTTCCTGTGGCCAGAGAGTATTCCAAGCTTGCATTGA
GATATTCTCATTACTTTGTTCATGTGTAAGTCTACCTCTGGAATGATCGT
GTTTCAATATATATGCAATTGCAGAAGCATAGTTTGGAGCCTCTGACAGT
GATCTGACTACTGAGTAGCCAGTGGCTGGATGCACCATGCTA
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