DN621609

Overview
NameDN621609
Unique NameDN621609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2295 contig Csv1_Contig2295:14..628. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621609 vs. ExPASy Swiss-Prot
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.819e-46
Identity = 96/128 (75.00%), Postives = 104/128 (81.25%), Query Frame = -2
Query:  166 KPAPFTVGKSAARGLPSL--AKTSFKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXLVYNTSALAQ 540
            KPA FTV K+AARGLPSL  A+ SFKIVA G  KIKTDKP+GING MDLR+G+DASGRK KG GVY++VDKYGANVDGYSPIYNEN+WS SGDVY GG TGLAIWAVT          LVYNTSALAQ
Sbjct:   13 KPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140          
BLAST of DN621609 vs. ExPASy Swiss-Prot
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.073e-45
Identity = 92/128 (71.88%), Postives = 104/128 (81.25%), Query Frame = -2
Query:  166 KPAPFTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXLVYNTSALAQ 540
            KPAPF+V K+A +GLPSLA++S  F++ A G  K+KTDKPYGING M LR+G+DASGRK KGKGVYQFVDKYGANVDGYSPIYN +DWSPSGDVY GG TGLAIWAVT          LV+NTSALAQ
Sbjct:    9 KPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136          
BLAST of DN621609 vs. ExPASy Swiss-Prot
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.025e-44
Identity = 92/129 (71.32%), Postives = 103/129 (79.84%), Query Frame = -2
Query:  166 KPAPFTVGKSAARGLPSLAK---TSFKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXLVYNTSALAQ 540
            KPA FTV K +ARGLPSL +   +SF+IVA G  KIKTDKP+G+NG MDLR+G+DASGRK KG GVY+FVDKYGANVDGYSPIYNE++WS SGDVY GG TGLAIWAVT          LVYNTSALAQ
Sbjct:   13 KPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141          
BLAST of DN621609 vs. ExPASy Swiss-Prot
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.923e-43
Identity = 88/124 (70.97%), Postives = 101/124 (81.45%), Query Frame = -2
Query:  166 FTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXLVYNTSALAQ 528
            FT+ K++ +GLPSLA++S  FK+VA G  K+KTDKPYGING M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT          LVYNTSALAQ
Sbjct:   15 FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138          
BLAST of DN621609 vs. ExPASy Swiss-Prot
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.895e-42
Identity = 87/124 (70.16%), Postives = 99/124 (79.84%), Query Frame = -2
Query:  166 FTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXLVYNTSALAQ 528
            FT+ K + +GLPSL ++S  FK+VA G  K+KTDKPYGING M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT          LVYNTSALAQ
Sbjct:   15 FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138          
BLAST of DN621609 vs. ExPASy Swiss-Prot
Match: PSBR_SPIOL (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.345e-39
Identity = 85/129 (65.89%), Postives = 97/129 (75.19%), Query Frame = -2
Query:  166 KPAPFTVG-KSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXLVYNTSALAQ 540
            KP+ F V  KSA +GLPSL+++S  F + A G  KIK DKP GI GGM LR+G+D+SGRK  GKGVYQFVDKYGANVDGYSPIYNE +W+P+GDVY GG TGL IWAVT          LVYNTSALAQ
Sbjct:   12 KPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140          
BLAST of DN621609 vs. ExPASy Swiss-Prot
Match: PSBR_HORVU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.505e-31
Identity = 70/117 (59.83%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  169 KSAARGLPSLAKTSFKIVAKGGK-IKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXLVYNTSALA 516
            +S   G+   A+ S  IVAK  K ++T +PYG  GG+  +EG+DASGR AKGKGVYQF DKYGANVDGYSPIY   +WSPSGDVY GG TGL +WAVT          LVY+TSALA
Sbjct:   21 RSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137          
The following BLAST results are available for this feature:
BLAST of DN621609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSBR_ARATH4.819e-4675.00Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_TOBAC1.073e-4571.88Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_BRACM2.025e-4471.32Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLTU2.923e-4370.97Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLLC1.895e-4270.16Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SPIOL3.345e-3965.89Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_HORVU1.505e-3159.83Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06P05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621609 ID=DN621609; Name=DN621609; organism=Citrus sinensis; type=EST; length=616bp
TTTTTTTTTACCAAATTATAGATGGCTATATGTCTCAATTTAAATCCACC
CAAAACATTACACAAAATAGATACACGAAGTAGCTGTGGAAGGTACATTT
AACAGCAACATTGACAAGTTATAAAAAATAGAGATAATAATGTAACATTG
ATTGAAATTCATCTACTGTGCCAAAGCACTTGTGTTGTAGACGAGAAGTG
CTCCTCCTGCAAGAAGACCGGCAAGAGTAACAGCCCAGATTGCCAAGCCA
GTTGCACCACCAGTATAGACATCACCACTGGGAGACCAGTCATTCTCGTT
GTAGATAGGACTGTATCCATCAACATTGGCACCGTATTTGTCAACAAATT
GGTAAACACCTTTCCCCTTAGCCTTCCTGCCGGATGCATCAAGACCTTCC
CTCAAATCCATACCACCATTTATTCCATAGGGTTTGTCGGTTTTGATCTT
GCCGCCTTTAGCCACAATTTTGAATGAAGTTTTAGCAAGAGAGGGAAGGC
CTCTCGCTGCTGATTTCCCCACAGTGAAAGGAGCTGGTTTCAGGCTCAAC
GAAGAAGCCATCACTGAGGCTGCCATTTGCTTTGCTGTGCTCTCCTGTTT
TGTTTTTGTTAATTTT
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