DN621609
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN621609 vs. ExPASy Swiss-Prot
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 4.819e-46 Identity = 96/128 (75.00%), Postives = 104/128 (81.25%), Query Frame = -2 Query: 166 KPAPFTVGKSAARGLPSL--AKTSFKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXLVYNTSALAQ 540 KPA FTV K+AARGLPSL A+ SFKIVA G KIKTDKP+GING MDLR+G+DASGRK KG GVY++VDKYGANVDGYSPIYNEN+WS SGDVY GG TGLAIWAVT LVYNTSALAQ Sbjct: 13 KPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140
BLAST of DN621609 vs. ExPASy Swiss-Prot
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.073e-45 Identity = 92/128 (71.88%), Postives = 104/128 (81.25%), Query Frame = -2 Query: 166 KPAPFTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXLVYNTSALAQ 540 KPAPF+V K+A +GLPSLA++S F++ A G K+KTDKPYGING M LR+G+DASGRK KGKGVYQFVDKYGANVDGYSPIYN +DWSPSGDVY GG TGLAIWAVT LV+NTSALAQ Sbjct: 9 KPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136
BLAST of DN621609 vs. ExPASy Swiss-Prot
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 2.025e-44 Identity = 92/129 (71.32%), Postives = 103/129 (79.84%), Query Frame = -2 Query: 166 KPAPFTVGKSAARGLPSLAK---TSFKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXLVYNTSALAQ 540 KPA FTV K +ARGLPSL + +SF+IVA G KIKTDKP+G+NG MDLR+G+DASGRK KG GVY+FVDKYGANVDGYSPIYNE++WS SGDVY GG TGLAIWAVT LVYNTSALAQ Sbjct: 13 KPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141
BLAST of DN621609 vs. ExPASy Swiss-Prot
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 2.923e-43 Identity = 88/124 (70.97%), Postives = 101/124 (81.45%), Query Frame = -2 Query: 166 FTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXLVYNTSALAQ 528 FT+ K++ +GLPSLA++S FK+VA G K+KTDKPYGING M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT LVYNTSALAQ Sbjct: 15 FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138
BLAST of DN621609 vs. ExPASy Swiss-Prot
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 1.895e-42 Identity = 87/124 (70.16%), Postives = 99/124 (79.84%), Query Frame = -2 Query: 166 FTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXLVYNTSALAQ 528 FT+ K + +GLPSL ++S FK+VA G K+KTDKPYGING M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT LVYNTSALAQ Sbjct: 15 FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138
BLAST of DN621609 vs. ExPASy Swiss-Prot
Match: PSBR_SPIOL (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 3.345e-39 Identity = 85/129 (65.89%), Postives = 97/129 (75.19%), Query Frame = -2 Query: 166 KPAPFTVG-KSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXLVYNTSALAQ 540 KP+ F V KSA +GLPSL+++S F + A G KIK DKP GI GGM LR+G+D+SGRK GKGVYQFVDKYGANVDGYSPIYNE +W+P+GDVY GG TGL IWAVT LVYNTSALAQ Sbjct: 12 KPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140
BLAST of DN621609 vs. ExPASy Swiss-Prot
Match: PSBR_HORVU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.505e-31 Identity = 70/117 (59.83%), Postives = 82/117 (70.09%), Query Frame = -2 Query: 169 KSAARGLPSLAKTSFKIVAKGGK-IKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXLVYNTSALA 516 +S G+ A+ S IVAK K ++T +PYG GG+ +EG+DASGR AKGKGVYQF DKYGANVDGYSPIY +WSPSGDVY GG TGL +WAVT LVY+TSALA Sbjct: 21 RSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137 The following BLAST results are available for this feature:
BLAST of DN621609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DN621609 ID=DN621609; Name=DN621609; organism=Citrus sinensis; type=EST; length=616bpback to top |