DN621606

Overview
NameDN621606
Unique NameDN621606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621606 vs. ExPASy Swiss-Prot
Match: RN185_PONAB (RING finger protein 185 OS=Pongo abelii GN=RNF185 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.424e-29
Identity = 77/187 (41.18%), Postives = 97/187 (51.87%), Query Frame = 3
Query:   39 MASGFSESTSVPSQN----PSCVGNSANDAGG----FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKT-QTDPRSKSYPGIDIPSRPAGQRPETAPPPEASYFPNXXXXXXXXXXXXATARIGNFTMGFG------GLFPSLFNIQFHGFPDATVYGT 554
            MAS    ++S P  +    PS   N A ++GG    FECNIC + A+D +++LCGHLFCWPCL++WL    + Q CPVCKA +  +K++PLYGRG T Q DPR K+      P RP GQRPE   P     F                   G F M FG      G+F + FNI   G P   V GT
Sbjct:    1 MASKGPSASSSPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE---PENRGGFQGFGFGD------------GGFQMSFGIGAFPFGIFATAFNIN-DGRPPPAVPGT 165          
BLAST of DN621606 vs. ExPASy Swiss-Prot
Match: RNF5_CAEEL (RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.608e-28
Identity = 75/207 (36.23%), Postives = 102/207 (49.28%), Query Frame = 3
Query:   54 SESTSVPSQNPSCVGNSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKTQTDPRSKSYPGIDIPSRPAGQRPETAPPPEASYFPNXXXXXXXXXXXXATARIGNFTMGFG---GLFPSLFNIQF---------------HGFPDATVYGTTSGFPN----GFSAFHGGHVHG 608
            +  T  PS+ P+   N  +++  FECNIC + A+D +V+LCGHLFCWPCL +WL    ++Q CPVCK+ +   K+VP+YGRG   +DPR K      +P RP GQR E  PPP++    N                  +F+ G G   GLFP +F + F               +G   A   G  +G  N    G  A   GH HG
Sbjct:    2 ASETKAPSEEPTSSSNK-DESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSAIDGNKVVPIYGRGGDSSDPRKK------VPPRPKGQRSE--PPPQSFAGFNWGGDGGMMGGGGPNV---HFSFGIGTVNGLFPLMFMLPFIQGIFPLSFVASFFGNGNQGAAAAGGGNGGGNDGNDGTHAHTHGHTHG 196          
BLAST of DN621606 vs. ExPASy Swiss-Prot
Match: RN185_RAT (RING finger protein 185 OS=Rattus norvegicus GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.608e-28
Identity = 73/178 (41.01%), Postives = 91/178 (51.12%), Query Frame = 3
Query:   42 ASGFSESTSVPSQNPSCVGNSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKT-QTDPRSKSYPGIDIPSRPAGQRPETAPPPEASYFPNXXXXXXXXXXXXATARIGNFTMGFG------GLFPSLFNIQFHGFPDATVYGT 554
            AS  + S   PS + +  G S      FECNIC + A+D +++LCGHLFCWPCL++WL    + Q CPVCKA +  +K++PLYGRG T Q DPR K+      P RP GQRPE   P     F                   G F M FG      G+F + FNI   G P   V GT
Sbjct:   10 ASTENSSAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE---PENRGGFQGFGFGD------------GGFQMSFGIGAFPFGIFATAFNIN-DGRPPPAVPGT 165          
BLAST of DN621606 vs. ExPASy Swiss-Prot
Match: RN185_MOUSE (RING finger protein 185 OS=Mus musculus GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.608e-28
Identity = 76/185 (41.08%), Postives = 95/185 (51.35%), Query Frame = 3
Query:   42 ASGFSESTSVPSQN---PSCVGNSANDAGG----FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKT-QTDPRSKSYPGIDIPSRPAGQRPETAPPPEASYFPNXXXXXXXXXXXXATARIGNFTMGFG------GLFPSLFNIQFHGFPDATVYGT 554
            + G S S S  + N   PS   N   ++GG    FECNIC + A+D +++LCGHLFCWPCL++WL    + Q CPVCKA +  +K++PLYGRG T Q DPR K+      P RP GQRPE   P     F                   G F M FG      G+F + FNI   G P   V GT
Sbjct:    3 SKGPSASASTENSNAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE---PENRGGFQGFGFGD------------GGFQMSFGIGAFPFGIFATAFNIN-DGRPPPAVPGT 165          
BLAST of DN621606 vs. ExPASy Swiss-Prot
Match: RN185_HUMAN (RING finger protein 185 OS=Homo sapiens GN=RNF185 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.608e-28
Identity = 73/178 (41.01%), Postives = 91/178 (51.12%), Query Frame = 3
Query:   42 ASGFSESTSVPSQNPSCVGNSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKT-QTDPRSKSYPGIDIPSRPAGQRPETAPPPEASYFPNXXXXXXXXXXXXATARIGNFTMGFG------GLFPSLFNIQFHGFPDATVYGT 554
            AS  + S   PS + +  G S      FECNIC + A+D +++LCGHLFCWPCL++WL    + Q CPVCKA +  +K++PLYGRG T Q DPR K+      P RP GQRPE   P     F                   G F M FG      G+F + FNI   G P   V GT
Sbjct:   10 ASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE---PENRGGFQGFGFGD------------GGFQMSFGIGAFPFGIFATAFNIN-DGRPPPAVPGT 165          
BLAST of DN621606 vs. ExPASy Swiss-Prot
Match: RN185_DANRE (RING finger protein 185 OS=Danio rerio GN=rnf185 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.677e-28
Identity = 74/185 (40.00%), Postives = 95/185 (51.35%), Query Frame = 3
Query:   42 ASGFSESTSVPSQNPSCVGNSANDAGG-------FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKT-QTDPRSKSYPGIDIPSRPAGQRPETAPPPEASYFPNXXXXXXXXXXXXATARIGNFTMGFG------GLFPSLFNIQFHGFPDATVYGT 554
            A+  S S+S  S   +  G SA ++GG       FECNIC + ++D +++LCGHLFCWPCL++WL    + Q CPVCKA +  +K++PLYGRG T Q DPR K+      P RP GQRPE   P     F                   G F M FG      G+F + FNI   G P     GT
Sbjct:    5 AASESSSSSSSSSAGAANGQSAGESGGGGAQDSTFECNICLDTSKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE---PENRGGFQGFGFGD------------GGFQMSFGIGAFPFGIFATAFNIN-DGRPPPAAPGT 167          
BLAST of DN621606 vs. ExPASy Swiss-Prot
Match: RN185_CHICK (RING finger protein 185 OS=Gallus gallus GN=RNF185 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.677e-28
Identity = 75/180 (41.67%), Postives = 93/180 (51.67%), Query Frame = 3
Query:   42 ASGFSESTSVPSQNPSC--VGNSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKT-QTDPRSKSYPGIDIPSRPAGQRPETAPPPEASYFPNXXXXXXXXXXXXATARIGNFTMGFG------GLFPSLFNIQFHGFPDATVYGT 554
            AS  S ST   S + S    G++ N    FECNIC + A+D +++LCGHLFCWPCL++WL    + Q CPVCKA +  +K++PLYGRG T Q DPR K+      P RP GQRPE   P     F                   G F M FG      G+F + FNI   G P   V GT
Sbjct:   10 ASTKSSSTGGTSGSSSSNGAGDNTNQDNTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE---PENRGGFQGFGFGD------------GGFQMSFGIGAFPFGIFATAFNIN-DGRPPPAVPGT 167          
BLAST of DN621606 vs. ExPASy Swiss-Prot
Match: RNF5_RAT (E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.989e-24
Identity = 58/125 (46.40%), Postives = 72/125 (57.60%), Query Frame = 3
Query:   39 MASGFSESTSVPSQNPSCVGNSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKTQ-TDPRSKSYPGIDIPSRPAGQRPETAPPPEASYFP 410
            MA+   E       N    G SA     FECNIC E A++ +V++CGHL+CWPCL++WL      QECPVCKA +  EK+VPLYGRG  +  DPR K+      P RP GQRP  AP     + P
Sbjct:    1 MAAAEEEDGGPEGPNRERGGASAT----FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGSQKPQDPRLKT------PPRPQGQRP--APESRGGFQP 113          
BLAST of DN621606 vs. ExPASy Swiss-Prot
Match: RNF5_MOUSE (E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.989e-24
Identity = 58/125 (46.40%), Postives = 72/125 (57.60%), Query Frame = 3
Query:   39 MASGFSESTSVPSQNPSCVGNSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKTQ-TDPRSKSYPGIDIPSRPAGQRPETAPPPEASYFP 410
            MA+   E       N    G SA     FECNIC E A++ +V++CGHL+CWPCL++WL      QECPVCKA +  EK+VPLYGRG  +  DPR K+      P RP GQRP  AP     + P
Sbjct:    1 MAAAEEEDGGPEGPNRERGGASAT----FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGSQKPQDPRLKT------PPRPQGQRP--APESRGGFQP 113          
BLAST of DN621606 vs. ExPASy Swiss-Prot
Match: RNF5_HUMAN (E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.989e-24
Identity = 51/97 (52.58%), Postives = 64/97 (65.98%), Query Frame = 3
Query:  123 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKTQ-TDPRSKSYPGIDIPSRPAGQRPETAPPPEASYFP 410
            FECNIC E A++ +V++CGHL+CWPCL++WL      QECPVCKA +  EK+VPLYGRG  +  DPR K+      P RP GQRP  AP     + P
Sbjct:   25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRGSQKPQDPRLKT------PPRPQGQRP--APESRGGFQP 113          
The following BLAST results are available for this feature:
BLAST of DN621606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RN185_PONAB9.424e-2941.18RING finger protein 185 OS=Pongo abelii GN=RNF185 ... [more]
RNF5_CAEEL1.608e-2836.23RING finger protein 5 OS=Caenorhabditis elegans GN... [more]
RN185_RAT1.608e-2841.01RING finger protein 185 OS=Rattus norvegicus GN=Rn... [more]
RN185_MOUSE1.608e-2841.08RING finger protein 185 OS=Mus musculus GN=Rnf185 ... [more]
RN185_HUMAN1.608e-2841.01RING finger protein 185 OS=Homo sapiens GN=RNF185 ... [more]
RN185_DANRE4.677e-2840.00RING finger protein 185 OS=Danio rerio GN=rnf185 P... [more]
RN185_CHICK4.677e-2841.67RING finger protein 185 OS=Gallus gallus GN=RNF185... [more]
RNF5_RAT6.989e-2446.40E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegi... [more]
RNF5_MOUSE6.989e-2446.40E3 ubiquitin-protein ligase RNF5 OS=Mus musculus G... [more]
RNF5_HUMAN6.989e-2452.58E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06P03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621606 ID=DN621606; Name=DN621606; organism=Citrus sinensis; type=EST; length=627bp
ATCTAATTGGAAGTTGCATTTACTCTTGATTTTAGGAGATGGCTAGTGGT
TTTTCGGAATCAACAAGTGTGCCGTCTCAAAACCCATCTTGCGTAGGCAA
TAGTGCCAATGATGCTGGTGGTTTTGAATGCAATATCTGCTTTGAATTAG
CTCAAGACCCAATTGTTACTCTTTGTGGCCACCTCTTTTGCTGGCCTTGC
CTATACAGATGGCTGCACCATCACTCTCATTCACAGGAATGCCCCGTGTG
CAAGGCTGTTGTCCAAGAGGAGAAATTGGTTCCTCTTTATGGTAGGGGCA
AAACCCAGACTGACCCACGATCAAAATCCTATCCGGGCATTGATATTCCT
AGTCGTCCCGCAGGGCAAAGACCCGAGACAGCTCCGCCTCCGGAAGCGAG
TTACTTTCCCAACTTGGGATTTGGATTAATGGGAGGATTGATGCCGATGG
CGACTGCAAGGATTGGTAACTTTACCATGGGTTTTGGTGGTCTTTTCCCT
TCATTGTTTAATATTCAGTTTCATGGGTTCCCTGATGCCACAGTTTATGG
AACCACCTCTGGTTTTCCCAATGGCTTTAGTGCTTTTCATGGTGGTCATG
TTCATGGATTTCCTCAGCCAAGTCGAG
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