DN621544

Overview
NameDN621544
Unique NameDN621544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6088 contig Csv1_Contig6088:958..1639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.022e-66
Identity = 124/126 (98.41%), Postives = 124/126 (98.41%), Query Frame = -2 
Query:  303 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 680
            LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNL DEVDLEDYVSRPDKISAAEI AICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK
Sbjct:  288 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLEDYVSRPDKISAAEITAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 413
[Close]
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6B_ARATH (26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.022e-66
Identity = 124/126 (98.41%), Postives = 125/126 (99.21%), Query Frame = -2 
Query:  303 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 680
            LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCT+KMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR NVKKPDTDFEFYK
Sbjct:  283 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRANVKKPDTDFEFYK 408
[Close]
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.636e-56
Identity = 105/125 (84.00%), Postives = 115/125 (92.00%), Query Frame = -2 
Query:  306 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 680
            LNQMDGFD +VNVKVIMATNR DTLDPALLRPGRLDRKIEFPLPDRRQKRL+FQV T+KMNLSDEVDLEDYVSRPDK+S AEI +ICQEAGMHA+RKNRYVILPKDFEKGY+ ++KK   +F FY
Sbjct:  278 LNQMDGFDVSVNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSDEVDLEDYVSRPDKLSGAEIQSICQEAGMHAIRKNRYVILPKDFEKGYKASIKKNTHEFNFY 402
[Close]
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.215e-56
Identity = 100/126 (79.37%), Postives = 118/126 (93.65%), Query Frame = -2 
Query:  303 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 680
            LNQMDGFDQT NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL+F   TAKMNLS+EVDLE++V+RPD++S A+I AICQEAGM+AVR+NRY++LPKDFEKGY+ N+KK ++++EFYK
Sbjct:  290 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITAKMNLSEEVDLEEFVARPDRVSGADINAICQEAGMNAVRENRYIVLPKDFEKGYKNNIKKDESEYEFYK 415
[Close]
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.432e-53
Identity = 99/126 (78.57%), Postives = 113/126 (89.68%), Query Frame = -2 
Query:  303 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 680
            LNQMDGFDQ VNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL+F   T+KMNLS+EVDLEDYV+RPDKIS A+I +ICQE+GM AVR+NRY++L KDFEK Y+T +KK + + EFYK
Sbjct:  293 LNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK 418
[Close]
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.432e-53
Identity = 99/126 (78.57%), Postives = 113/126 (89.68%), Query Frame = -2 
Query:  303 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 680
            LNQMDGFDQ VNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL+F   T+KMNLS+EVDLEDYV+RPDKIS A+I +ICQE+GM AVR+NRY++L KDFEK Y+T +KK + + EFYK
Sbjct:  293 LNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK 418
[Close]
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 6.432e-53
Identity = 99/126 (78.57%), Postives = 113/126 (89.68%), Query Frame = -2 
Query:  303 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 680
            LNQMDGFDQ VNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL+F   T+KMNLS+EVDLEDYV+RPDKIS A+I +ICQE+GM AVR+NRY++L KDFEK Y+T +KK + + EFYK
Sbjct:  293 LNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK 418
[Close]
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.432e-53
Identity = 99/126 (78.57%), Postives = 113/126 (89.68%), Query Frame = -2 
Query:  303 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 680
            LNQMDGFDQ VNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL+F   T+KMNLS+EVDLEDYV+RPDKIS A+I +ICQE+GM AVR+NRY++L KDFEK Y+T +KK + + EFYK
Sbjct:  293 LNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK 418
[Close]
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.702e-51
Identity = 98/126 (77.78%), Postives = 109/126 (86.51%), Query Frame = -2 
Query:  303 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 680
            LNQMDGFDQ+ NVKVIMATNR DTLDPALLRPGRLDRKIEFPLPDRRQKRLVF    ++MNLSD+VDLED+V+RPDKIS A+I +ICQEAGM AVR+NRYV+L KD EK Y+  VKK   DFEFYK
Sbjct:  289 LNQMDGFDQSTNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTVCSRMNLSDDVDLEDWVARPDKISGADINSICQEAGMQAVRENRYVVLTKDLEKAYKNVVKKDTNDFEFYK 414
[Close]
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.341e-50
Identity = 96/126 (76.19%), Postives = 109/126 (86.51%), Query Frame = -2 
Query:  303 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 680
            LNQMDGFDQ VNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL+F   T+KMNLS+EVDLEDYV+RPDKIS A+I +ICQ  GM AVR+  Y++L KDFEK Y+T +KK + + EFYK
Sbjct:  293 LNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQARGMLAVRETAYIVLAKDFEKAYKTVIKKDEQEHEFYK 418
The following BLAST results are available for this feature:
BLAST of DN621544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
PRS6B_SOLTU1.022e-6698.4126S protease regulatory subunit 6B homolog OS=Sola... [more]
PRS6B_ARATH1.022e-6698.4126S protease regulatory subunit 6B homolog OS=Arab... [more]
PRS6B_DICDI1.636e-5684.0026S protease regulatory subunit 6B homolog OS=Dict... [more]
PRS6B_MANSE6.215e-5679.3726S protease regulatory subunit 6B OS=Manduca sext... [more]
PRS6B_RAT6.432e-5378.5726S protease regulatory subunit 6B OS=Rattus norve... [more]
PRS6B_MACFA6.432e-5378.5726S protease regulatory subunit 6B OS=Macaca fasci... [more]
PRS6B_HUMAN6.432e-5378.5726S protease regulatory subunit 6B OS=Homo sapiens... [more]
PRS6B_BOVIN6.432e-5378.5726S protease regulatory subunit 6B OS=Bos taurus G... [more]
PRS6B_CAEEL2.702e-5177.78Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PRS6B_MOUSE1.341e-5076.1926S protease regulatory subunit 6B OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621544 ID=DN621544; Name=DN621544; organism=Citrus sinensis; type=EST; length=681bp
CCAAAAATAATAATAAAATTTAAAAAATACAAACGTACTTGTGCACACTA
GGCCTCGTAAAAATATTAATTCAAAGTCATAATATGGCGCAAAATCAGAC
ATAAATCAAACCATTAATTCAGATTTTTCTGATTTTTAACGCTACTCTAA
CTTAAGCTGGAATATAATGCTCAATGAAGTCTAATAAAGCCATATCACAA
GTTGTGGCGATGCATGACCAATGGCAACGATGTTCATAGTGAGCGAGACA
ATCTGACAAACATTATCAAAGTGATCTTCATAAACTCTTCTAGCCCTCTT
CACTTGTAAAATTCGAAGTCGGTGTCGGGCTTCTTCACATTGGTCCGATA
ACCCTTTTCAAAGTCCTTGGGGAGTATGACATACCTGTTCTTGCGCACAG
CATGCATTCCTGCCTCTTGGCAGATGGCTGCAATCTCAGCAGCACTGATT
TTATCCGGACGGGAAACATAATCCTCCAAGTCTACCTCATCGCTTAAGTT
CATCTTTGCCGTGCAAACCTGAAAAACGAGCCTCTTTTGTCGTCTATCAG
GCAAAGGAAATTCAATTTTTCGGTCAAGCCTTCCAGGACGGAGAAGTGCA
GGGTCCAATGTGTCAGCCCGATTTGTTGCCATGATGACCTTAACATTTAC
AGTCTGATCAAATCCGTCCATCTGATTGAGG
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