DN621540

Overview
NameDN621540
Unique NameDN621540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: RPF1_PONAB (Ribosome production factor 1 OS=Pongo abelii GN=BXDC5 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.180e-41
Identity = 87/190 (45.79%), Postives = 121/190 (63.68%), Query Frame = 2
Query:   35 ARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQS 601
            A+   +K    LG++ P +  P+TI+N R  DET   P+D+E+      DEF+S   +  +PKILITT      R      +L +VIPNSH Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK+IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP +
Sbjct:   81 AKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHN 270          
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: RPF1_HUMAN (Ribosome production factor 1 OS=Homo sapiens GN=BXDC5 PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.180e-41
Identity = 87/190 (45.79%), Postives = 121/190 (63.68%), Query Frame = 2
Query:   35 ARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQS 601
            A+   +K    LG++ P +  P+TI+N R  DET   P+D+E+      DEF+S   +  +PKILITT      R      +L +VIPNSH Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK+IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP +
Sbjct:   81 AKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHN 270          
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: RPF1_MOUSE (Ribosome production factor 1 OS=Mus musculus GN=Bxdc5 PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 5.858e-41
Identity = 85/190 (44.74%), Postives = 121/190 (63.68%), Query Frame = 2
Query:   35 ARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQS 601
            A+   +K    LG++ P +  P+TI+N R  DET   P+D+E+      DEF+S   +  +PKILITT      R      +L +VIP+SH Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK+IK  G +PT H+PE++LNNF TRLGH +GR+  SLFP +
Sbjct:   81 AKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHN 270          
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: RPF1_RAT (Ribosome production factor 1 OS=Rattus norvegicus GN=Bxdc5 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.305e-40
Identity = 84/190 (44.21%), Postives = 121/190 (63.68%), Query Frame = 2
Query:   35 ARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQS 601
            A+   ++    LG++ P +  P+TI+N R  DET   P+D+E+      DEF+S   +  +PKILITT      R      +L +VIP+SH Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK+IK  G +PT H+PE++LNNF TRLGH +GR+  SLFP +
Sbjct:   81 AKKKLKREREALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHN 270          
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: RPF1_XENLA (Ribosome production factor 1 OS=Xenopus laevis GN=bxdc5 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.214e-39
Identity = 83/187 (44.39%), Postives = 114/187 (60.96%), Query Frame = 2
Query:   38 RDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595
            R   +K    LG++ P +  P+TIEN R  DET   P D+E+      DEF+    +   PKILITT      R   F  +L S+IPNS  Y R    LKKII     +D+T ++V++ +R+ P+ L++  LPDGPTAHFK+S + LRK++K  G  PT H PE++LNNF TRLGH +GR+  SL+P
Sbjct:   76 RKKRKKEREALGDKAPPKPVPKTIENQRVYDETTVDPADEEVALDEATDEFAPYFNKQTTPKILITTSDRPRGRSVRFTEQLSSIIPNSDVYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAHFKISNVRLRKEMKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYP 262          
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: RPF1_DANRE (Ribosome production factor 1 OS=Danio rerio GN=bxdc5 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.917e-38
Identity = 80/183 (43.72%), Postives = 118/183 (64.48%), Query Frame = 2
Query:   50 EKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595
            E++AL+  ++ P +  P+TIEN R  DET   P+D+E+      DEFS+   +   PK+LITT      R   F  +L +VIP+++ Y R    LKK+I     + FT ++V++ +R+ P+ +++  LPDGPTAHFK+S + LRK++K  G NPT H PE++LNNF TRLGH +GRL  +LFP
Sbjct:   69 ERKALD--DKAPPKEVPKTIENQRIYDETTVNPEDEEVAFDEGTDEFSAYFNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEMKRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFP 249          
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: YUY1_CAEEL (Brix domain-containing protein F44G4.1 OS=Caenorhabditis elegans GN=F44G4.1 PE=2 SV=4)

HSP 1 Score: 152.14 bits (383), Expect = 1.950e-36
Identity = 74/177 (41.81%), Postives = 108/177 (61.02%), Query Frame = 2
Query:   65 ELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595
            ELGE  P +  P+TIE+ RE D T+   +DDE+      DEF+    +  +PK++IT           F  EL   IPNS  + R    LK IIE AK+++FT ++VVH +R++P+ ++   LP+GPTA+FK++ L   +D+K  G  T H PE++LNNF TRLGH + R++  LFP
Sbjct:  126 ELGESAPQKEVPKTIESMREYDATMVNEEDDEVEHDEANDEFAPYFNRETSPKVMITMTPKAKITTFKFCFELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLKKFGESTSHFPEVILNNFNTRLGHNIARMLACLFP 302          
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: YDS4_SCHPO (Brix domain-containing protein C4F8.04 OS=Schizosaccharomyces pombe GN=SPAC4F8.04 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.806e-32
Identity = 81/187 (43.32%), Postives = 117/187 (62.57%), Query Frame = 2
Query:   50 EKRALELGEEPPARMTPRTIENTREPDETVCRPD-DDELFAGNDADEFSSIL-KQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKR-GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQS 601
            EK+ L L E  PA     TIE+ R  DET+     D+EL A    DEFS+   ++   PK+L+TT +  S +   F SELL   PN+ + KR G  ++ +I E A K+ +T ++V++ +R++ +AL ++ LP+GP+ +F LS L   K+I NHG  TGHIPEL++NNF+TRLG  V R  QSLF Q+
Sbjct:   41 EKKRLRLSENIPA-----TIESKRVYDETIIEDKPDEELQAELKDDEFSAYFSEERKVPKLLVTTSKRASRKCYDFASELLDCFPNAEFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGPSFYFTLSNLQTAKEISNHGRSTGHIPELIINNFSTRLGMTVARAFQSLFIQT 222          
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: RPF1_DROME (Probable ribosome production factor 1 OS=Drosophila melanogaster GN=CG6712 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.497e-28
Identity = 71/168 (42.26%), Postives = 105/168 (62.50%), Query Frame = 2
Query:  104 TIENTREPDETVCR----PDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIK-NHGNPTGHIPELVLNNFATRLGHRVGRLIQSLF 592
            TIE+ RE D+T        D++EL      D+FSS  ++   PK+LIT      ++   F  EL  + PN+    R    +KKI + A++++FT +++V+ +RR+P+ LL+I LP+GPTAHFKLS + L  DIK +H   T H PE++LNNF TRLG  VGR++ +LF
Sbjct:  143 TIESLREKDQTEVANLNDSDNEELQKELQLDDFSSYFERSYEPKVLITFADNPVTKTRKFGLELSRIFPNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLGLTVGRMLGALF 310          
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: RPF1_YEAST (Ribosome production factor 1 OS=Saccharomyces cerevisiae GN=RPF1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.955e-28
Identity = 76/194 (39.18%), Postives = 111/194 (57.22%), Query Frame = 2
Query:   38 RDAAEKRALELGEEPPARMTPRTIENTREPDETVCRP---DDDEL--FAGNDADEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGT-YDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQS 601
            R   E+   EL E+       +TIENTR  DET+ +    D+D+L  +  ++++E          PKI +TT          F + L+ ++PN  + KR   Y LK+I +   K++FT I++++ ++++   L  I LP+GPT +FKLS  V  K I  HG PT HIPEL+LNNF TRLG  VGRL QS+ PQ+
Sbjct:   37 RAKEERENPELREQRLKENVTQTIENTRVYDETINKEVEGDEDDLMRYFNSNSNE---------PPKIFLTTNVNAKKSAYEFANILIEILPNVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVEVKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQN 221          
The following BLAST results are available for this feature:
BLAST of DN621540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RPF1_PONAB1.180e-4145.79Ribosome production factor 1 OS=Pongo abelii GN=BX... [more]
RPF1_HUMAN1.180e-4145.79Ribosome production factor 1 OS=Homo sapiens GN=BX... [more]
RPF1_MOUSE5.858e-4144.74Ribosome production factor 1 OS=Mus musculus GN=Bx... [more]
RPF1_RAT1.305e-4044.21Ribosome production factor 1 OS=Rattus norvegicus ... [more]
RPF1_XENLA3.214e-3944.39Ribosome production factor 1 OS=Xenopus laevis GN=... [more]
RPF1_DANRE7.917e-3843.72Ribosome production factor 1 OS=Danio rerio GN=bxd... [more]
YUY1_CAEEL1.950e-3641.81Brix domain-containing protein F44G4.1 OS=Caenorha... [more]
YDS4_SCHPO3.806e-3243.32Brix domain-containing protein C4F8.04 OS=Schizosa... [more]
RPF1_DROME1.497e-2842.26Probable ribosome production factor 1 OS=Drosophil... [more]
RPF1_YEAST1.955e-2839.18Ribosome production factor 1 OS=Saccharomyces cere... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621540 ID=DN621540; Name=DN621540; organism=Citrus sinensis; type=EST; length=602bp
CCAGAAGAAAGTAGAGAAGCGCAAGAAACTCAAAGCGCGCGACGCTGCCG
AGAAACGCGCTCTCGAGCTCGGTGAGGAGCCTCCTGCGAGAATGACCCCT
CGCACCATCGAGAACACAAGAGAGCCTGATGAGACCGTATGCCGGCCTGA
CGATGATGAGCTATTTGCGGGTAATGATGCTGATGAGTTTAGTTCTATTC
TAAAGCAGGGATGCGCCCCGAAGATATTGATCACTACATGTCGTTTCAAT
TCCAGTAGAGGACCGGCCTTTATATCAGAGTTACTGTCTGTGATCCCAAA
TTCTCACTATTACAAGAGAGGAACCTATGATTTGAAGAAGATTATAGAAT
ATGCAAAGAAGAAGGACTTCACTTCTATAATAGTTGTTCACACCAATAGG
AGGGAACCAGATGCTCTACTAATCATTGGCCTGCCTGATGGACCTACTGC
CCATTTCAAGCTGTCAAAGCTTGTTTTACGCAAGGATATTAAGAATCATG
GAAATCCTACCGGTCACATTCCGGAGCTAGTGTTGAATAACTTCGCAACA
CGCCTGGGTCATCGTGTTGGGAGATTGATACAGTCACTTTTCCCTCAAAG
TC
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