DN621540
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: RPF1_PONAB (Ribosome production factor 1 OS=Pongo abelii GN=BXDC5 PE=2 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.180e-41 Identity = 87/190 (45.79%), Postives = 121/190 (63.68%), Query Frame = 2 Query: 35 ARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQS 601 A+ +K LG++ P + P+TI+N R DET P+D+E+ DEF+S + +PKILITT R +L +VIPNSH Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAHFK+S + LRK+IK G +PT HIPE++LNNF TRLGH +GR+ SLFP + Sbjct: 81 AKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHN 270
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: RPF1_HUMAN (Ribosome production factor 1 OS=Homo sapiens GN=BXDC5 PE=1 SV=2) HSP 1 Score: 169.474 bits (428), Expect = 1.180e-41 Identity = 87/190 (45.79%), Postives = 121/190 (63.68%), Query Frame = 2 Query: 35 ARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQS 601 A+ +K LG++ P + P+TI+N R DET P+D+E+ DEF+S + +PKILITT R +L +VIPNSH Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAHFK+S + LRK+IK G +PT HIPE++LNNF TRLGH +GR+ SLFP + Sbjct: 81 AKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHN 270
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: RPF1_MOUSE (Ribosome production factor 1 OS=Mus musculus GN=Bxdc5 PE=2 SV=2) HSP 1 Score: 167.162 bits (422), Expect = 5.858e-41 Identity = 85/190 (44.74%), Postives = 121/190 (63.68%), Query Frame = 2 Query: 35 ARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQS 601 A+ +K LG++ P + P+TI+N R DET P+D+E+ DEF+S + +PKILITT R +L +VIP+SH Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAHFK+S + LRK+IK G +PT H+PE++LNNF TRLGH +GR+ SLFP + Sbjct: 81 AKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHN 270
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: RPF1_RAT (Ribosome production factor 1 OS=Rattus norvegicus GN=Bxdc5 PE=2 SV=2) HSP 1 Score: 166.007 bits (419), Expect = 1.305e-40 Identity = 84/190 (44.21%), Postives = 121/190 (63.68%), Query Frame = 2 Query: 35 ARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQS 601 A+ ++ LG++ P + P+TI+N R DET P+D+E+ DEF+S + +PKILITT R +L +VIP+SH Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAHFK+S + LRK+IK G +PT H+PE++LNNF TRLGH +GR+ SLFP + Sbjct: 81 AKKKLKREREALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHN 270
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: RPF1_XENLA (Ribosome production factor 1 OS=Xenopus laevis GN=bxdc5 PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 3.214e-39 Identity = 83/187 (44.39%), Postives = 114/187 (60.96%), Query Frame = 2 Query: 38 RDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595 R +K LG++ P + P+TIEN R DET P D+E+ DEF+ + PKILITT R F +L S+IPNS Y R LKKII +D+T ++V++ +R+ P+ L++ LPDGPTAHFK+S + LRK++K G PT H PE++LNNF TRLGH +GR+ SL+P Sbjct: 76 RKKRKKEREALGDKAPPKPVPKTIENQRVYDETTVDPADEEVALDEATDEFAPYFNKQTTPKILITTSDRPRGRSVRFTEQLSSIIPNSDVYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAHFKISNVRLRKEMKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYP 262
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: RPF1_DANRE (Ribosome production factor 1 OS=Danio rerio GN=bxdc5 PE=2 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 7.917e-38 Identity = 80/183 (43.72%), Postives = 118/183 (64.48%), Query Frame = 2 Query: 50 EKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595 E++AL+ ++ P + P+TIEN R DET P+D+E+ DEFS+ + PK+LITT R F +L +VIP+++ Y R LKK+I + FT ++V++ +R+ P+ +++ LPDGPTAHFK+S + LRK++K G NPT H PE++LNNF TRLGH +GRL +LFP Sbjct: 69 ERKALD--DKAPPKEVPKTIENQRIYDETTVNPEDEEVAFDEGTDEFSAYFNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEMKRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFP 249
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: YUY1_CAEEL (Brix domain-containing protein F44G4.1 OS=Caenorhabditis elegans GN=F44G4.1 PE=2 SV=4) HSP 1 Score: 152.14 bits (383), Expect = 1.950e-36 Identity = 74/177 (41.81%), Postives = 108/177 (61.02%), Query Frame = 2 Query: 65 ELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595 ELGE P + P+TIE+ RE D T+ +DDE+ DEF+ + +PK++IT F EL IPNS + R LK IIE AK+++FT ++VVH +R++P+ ++ LP+GPTA+FK++ L +D+K G T H PE++LNNF TRLGH + R++ LFP Sbjct: 126 ELGESAPQKEVPKTIESMREYDATMVNEEDDEVEHDEANDEFAPYFNRETSPKVMITMTPKAKITTFKFCFELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLKKFGESTSHFPEVILNNFNTRLGHNIARMLACLFP 302
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: YDS4_SCHPO (Brix domain-containing protein C4F8.04 OS=Schizosaccharomyces pombe GN=SPAC4F8.04 PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 3.806e-32 Identity = 81/187 (43.32%), Postives = 117/187 (62.57%), Query Frame = 2 Query: 50 EKRALELGEEPPARMTPRTIENTREPDETVCRPD-DDELFAGNDADEFSSIL-KQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKR-GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQS 601 EK+ L L E PA TIE+ R DET+ D+EL A DEFS+ ++ PK+L+TT + S + F SELL PN+ + KR G ++ +I E A K+ +T ++V++ +R++ +AL ++ LP+GP+ +F LS L K+I NHG TGHIPEL++NNF+TRLG V R QSLF Q+ Sbjct: 41 EKKRLRLSENIPA-----TIESKRVYDETIIEDKPDEELQAELKDDEFSAYFSEERKVPKLLVTTSKRASRKCYDFASELLDCFPNAEFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGPSFYFTLSNLQTAKEISNHGRSTGHIPELIINNFSTRLGMTVARAFQSLFIQT 222
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: RPF1_DROME (Probable ribosome production factor 1 OS=Drosophila melanogaster GN=CG6712 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.497e-28 Identity = 71/168 (42.26%), Postives = 105/168 (62.50%), Query Frame = 2 Query: 104 TIENTREPDETVCR----PDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIK-NHGNPTGHIPELVLNNFATRLGHRVGRLIQSLF 592 TIE+ RE D+T D++EL D+FSS ++ PK+LIT ++ F EL + PN+ R +KKI + A++++FT +++V+ +RR+P+ LL+I LP+GPTAHFKLS + L DIK +H T H PE++LNNF TRLG VGR++ +LF Sbjct: 143 TIESLREKDQTEVANLNDSDNEELQKELQLDDFSSYFERSYEPKVLITFADNPVTKTRKFGLELSRIFPNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLGLTVGRMLGALF 310
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: RPF1_YEAST (Ribosome production factor 1 OS=Saccharomyces cerevisiae GN=RPF1 PE=1 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.955e-28 Identity = 76/194 (39.18%), Postives = 111/194 (57.22%), Query Frame = 2 Query: 38 RDAAEKRALELGEEPPARMTPRTIENTREPDETVCRP---DDDEL--FAGNDADEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGT-YDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQS 601 R E+ EL E+ +TIENTR DET+ + D+D+L + ++++E PKI +TT F + L+ ++PN + KR Y LK+I + K++FT I++++ ++++ L I LP+GPT +FKLS V K I HG PT HIPEL+LNNF TRLG VGRL QS+ PQ+ Sbjct: 37 RAKEERENPELREQRLKENVTQTIENTRVYDETINKEVEGDEDDLMRYFNSNSNE---------PPKIFLTTNVNAKKSAYEFANILIEILPNVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVEVKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQN 221 The following BLAST results are available for this feature:
BLAST of DN621540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
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Sequences
The
following sequences are available for this feature:
EST sequence >DN621540 ID=DN621540; Name=DN621540; organism=Citrus sinensis; type=EST; length=602bpback to top |