DN621426

Overview
NameDN621426
Unique NameDN621426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10728 contig Csv1_Contig10728:72..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN621426 vs. ExPASy Swiss-Prot
Match: RBBP6_MOUSE (Retinoblastoma-binding protein 6 OS=Mus musculus GN=Rbbp6 PE=1 SV=5)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 3 
Query:   42 IRYKFRSSMNFDSVDIDGRLSVSVRDLKSMVVHNKKLNICHDFDLVFSDAVTGQEYNDENFQIPSGSSVIIKRVPAGSV 278
            + YKF S +N+D+V  DG L +S+ DLK  ++  +KL    D DL  ++A T +EY D+N  IP  SSVI++R+P G V
Sbjct:    4 VHYKFSSKLNYDTVTFDG-LHISLCDLKKQIMGREKLKAA-DSDLQITNAQTKEEYTDDNALIPKNSSVIVRRIPIGGV 80
[Close]
BLAST of DN621426 vs. ExPASy Swiss-Prot
Match: RBBP6_HUMAN (Retinoblastoma-binding protein 6 OS=Homo sapiens GN=RBBP6 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 3 
Query:   42 IRYKFRSSMNFDSVDIDGRLSVSVRDLKSMVVHNKKLNICHDFDLVFSDAVTGQEYNDENFQIPSGSSVIIKRVPAGSV 278
            + YKF S +N+D+V  DG L +S+ DLK  ++  +KL    D DL  ++A T +EY D+N  IP  SSVI++R+P G V
Sbjct:    4 VHYKFSSKLNYDTVTFDG-LHISLCDLKKQIMGREKLKAA-DCDLQITNAQTKEEYTDDNALIPKNSSVIVRRIPIGGV 80
The following BLAST results are available for this feature:
BLAST of DN621426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RBBP6_MOUSE3.236e-1144.30Retinoblastoma-binding protein 6 OS=Mus musculus G... [more]
RBBP6_HUMAN3.236e-1144.30Retinoblastoma-binding protein 6 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06L03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006L03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621426 ID=DN621426; Name=DN621426; organism=Citrus sinensis; type=EST; length=644bp
CGAGTTTGTTATTGACTCGCCGATACGACTCGGCCATGTCCATCCGGTAT
AAATTTAGGAGCTCAATGAACTTTGACTCCGTCGACATCGACGGTCGGCT
TTCAGTTTCAGTTCGCGATCTGAAATCGATGGTTGTCCATAACAAGAAAC
TCAATATTTGCCATGACTTCGATCTCGTCTTCTCTGATGCCGTTACTGGT
CAAGAGTATAACGATGAAAACTTTCAAATTCCAAGTGGCTCGAGTGTGAT
TATCAAGAGAGTGCCTGCAGGATCAGTACCATTAGATTTGGCATGCAGTG
GCTCGTTTGTAAATATTGCTATTAAGAAAACCAATGAGGTTAAGCCCTCT
CAGCCAAAGATTGAGGAAATCAACTTTGATGACTTTGGGGTTGATTTGTG
TCCCGCTCTCAACGGGAACTTATCTTGCTCTGACGTTGATGATGTTGATA
AAAATATTTGTGTTGGCAGTGAGAGGGAAAATATTGACACCACAAGAACT
TCGGAGCCACACAACACAGGATGTCAAAAACTTGAAGCAAGCAACGTTAA
TGAGGCTATTCGAAGAGGTGCTGTGCACAGCAGAATTGAAGAGGATTTAT
TGCAGACAGAATCAAAATCAGATGTTCCACAATTCATGAAACTA
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