DN621418

Overview
NameDN621418
Unique NameDN621418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10292 contig Csv1_Contig10292:4..498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621418 vs. ExPASy Swiss-Prot
Match: PRP31_XENLA (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus laevis GN=prpf31 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.242e-17
Identity = 50/127 (39.37%), Postives = 74/127 (58.27%), Query Frame = 1
Query:  115 TLADSFLADLEELSDNEADVNEEEGGVDATNMXXXXXXXXXXXXALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPE 495
            +LAD  LADLEE ++ E     EE  +D  ++             LN + + +++KL  S+ F++I+ K+E  +Q     S     +E  PEY++IVD N L+V+IENE+ IIH FIRDKY  +FPE
Sbjct:    2 SLADELLADLEEAAEEE-----EENLIDEDDLETIEEVDEEMQVDLNAESVKSIAKLSDSKLFSEILLKIEGYIQKQPKASEVMGPVEAAPEYKVIVDANNLTVEIENELNIIHKFIRDKYSKRFPE 123          
BLAST of DN621418 vs. ExPASy Swiss-Prot
Match: PRP31_XENTR (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus tropicalis GN=prpf31 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.453e-16
Identity = 48/127 (37.80%), Postives = 74/127 (58.27%), Query Frame = 1
Query:  115 TLADSFLADLEELSDNEADVNEEEGGVDATNMXXXXXXXXXXXXALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPE 495
            +LAD  LADLEE ++ E     EE  +D  ++             LN + + +++KL  S+ F++I+ K++  ++     S     +E  PEY++IVD N L+V+IENE+ IIH FIRDKY  +FPE
Sbjct:    2 SLADELLADLEEAAEEE-----EENLIDEDDLETIEEVQEEMQVDLNAESVKSIAKLSDSKLFSEILLKIDGYIKKQPKASEVMGPVEAAPEYKVIVDANNLTVEIENELNIIHKFIRDKYSKRFPE 123          
BLAST of DN621418 vs. ExPASy Swiss-Prot
Match: PRP31_MOUSE (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus musculus GN=Prpf31 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 7.213e-16
Identity = 51/129 (39.53%), Postives = 73/129 (56.59%), Query Frame = 1
Query:  115 TLADSFLADLEELSDNEADVNEEEGGV--DATNMXXXXXXXXXXXXALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPE 495
            +LAD  LADLEE ++      EEEGG   +                 L+ D + +++KL  S+ F +IM K+E  +   ++ S     +E  PEY++IVD N L+V+IENE+ IIH FIRDKY  +FPE
Sbjct:    2 SLADELLADLEEAAE------EEEGGSYGEEEEEPAIEDVQEETQLDLSGDSVKSIAKLWDSKMFAEIMMKIEEYISKQANASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPE 124          
BLAST of DN621418 vs. ExPASy Swiss-Prot
Match: PRP31_HUMAN (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens GN=PRPF31 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.607e-15
Identity = 51/129 (39.53%), Postives = 71/129 (55.04%), Query Frame = 1
Query:  115 TLADSFLADLEELSDNEADVNEEEGGV--DATNMXXXXXXXXXXXXALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPE 495
            +LAD  LADLEE ++      EEEGG   +                 L+ D +  ++KL  S+ F +IM K+E  +   +  S     +E  PEY++IVD N L+V+IENE+ IIH FIRDKY  +FPE
Sbjct:    2 SLADELLADLEEAAE------EEEGGSYGEEEEEPAIEDVQEETQLDLSGDSVKTIAKLWDSKMFAEIMMKIEEYISKQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPE 124          
BLAST of DN621418 vs. ExPASy Swiss-Prot
Match: PRP31_DANRE (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Danio rerio GN=prpf31 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.964e-13
Identity = 47/134 (35.07%), Postives = 68/134 (50.75%), Query Frame = 1
Query:  115 TLADSFLADLEELSDNEA----DVNEEEGGVDATNMXXXXXXXXXXXXALNYDDLDNVS---KLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPE 495
            +LAD  LADLEE  + +         E  G                   ++Y   ++V+   KL+ S+ F +IM K+   + N    S     +E DPEY+LIV  N L+V+I+NE+ IIH F+RDKY  +FPE
Sbjct:    2 SLADELLADLEEAGEEDGLYPGGEEGESDGEPGERQVDGGLEDIPEEMEVDYSSTESVTSIAKLRHSKPFAEIMDKISHYVGNQRKNSEVSGPVEADPEYRLIVAANNLTVEIDNELNIIHKFVRDKYSKRFPE 135          
The following BLAST results are available for this feature:
BLAST of DN621418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PRP31_XENLA2.242e-1739.37U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xen... [more]
PRP31_XENTR1.453e-1637.80U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xen... [more]
PRP31_MOUSE7.213e-1639.53U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus... [more]
PRP31_HUMAN1.607e-1539.53U4/U6 small nuclear ribonucleoprotein Prp31 OS=Hom... [more]
PRP31_DANRE1.964e-1335.07U4/U6 small nuclear ribonucleoprotein Prp31 OS=Dan... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06K23_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621418 ID=DN621418; Name=DN621418; organism=Citrus sinensis; type=EST; length=495bp
GTGCTGTGCATCAGTCGGTCCCCGTCCGCACGTTAGGCTATTAATCAATC
ACTCGGAGCAAACCCTAGGACAGGATTTAATCGTTTTCCTTCCCTCAAAC
TCGAGACCATGGCAACTCTTGCTGATTCCTTCCTCGCTGACCTGGAAGAG
TTATCTGACAACGAAGCTGATGTTAATGAAGAGGAAGGAGGAGTTGATGC
CACAAACATGGAAGAAGATATTGACGGTGACATTGAAGATATAGAAGCTC
TGAACTATGATGACTTGGACAATGTTTCAAAATTGCAGAAATCTCAGAGA
TTCACTGATATAATGCAGAAAGTTGAAGCTGCACTCCAGAACGGTTCTGA
TATATCTAATCATGGAATGGTATTGGAGGATGATCCAGAGTATCAGCTAA
TTGTCGATTGTAATGTATTATCAGTTGACATAGAGAATGAGATTGTGATT
ATTCATAATTTCATTCGCGACAAGTACAGACTGAAATTTCCAGAG
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