DN621418
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN621418 vs. ExPASy Swiss-Prot
Match: PRP31_XENLA (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus laevis GN=prpf31 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.242e-17 Identity = 50/127 (39.37%), Postives = 74/127 (58.27%), Query Frame = 1 Query: 115 TLADSFLADLEELSDNEADVNEEEGGVDATNMXXXXXXXXXXXXALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPE 495 +LAD LADLEE ++ E EE +D ++ LN + + +++KL S+ F++I+ K+E +Q S +E PEY++IVD N L+V+IENE+ IIH FIRDKY +FPE Sbjct: 2 SLADELLADLEEAAEEE-----EENLIDEDDLETIEEVDEEMQVDLNAESVKSIAKLSDSKLFSEILLKIEGYIQKQPKASEVMGPVEAAPEYKVIVDANNLTVEIENELNIIHKFIRDKYSKRFPE 123
BLAST of DN621418 vs. ExPASy Swiss-Prot
Match: PRP31_XENTR (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus tropicalis GN=prpf31 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.453e-16 Identity = 48/127 (37.80%), Postives = 74/127 (58.27%), Query Frame = 1 Query: 115 TLADSFLADLEELSDNEADVNEEEGGVDATNMXXXXXXXXXXXXALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPE 495 +LAD LADLEE ++ E EE +D ++ LN + + +++KL S+ F++I+ K++ ++ S +E PEY++IVD N L+V+IENE+ IIH FIRDKY +FPE Sbjct: 2 SLADELLADLEEAAEEE-----EENLIDEDDLETIEEVQEEMQVDLNAESVKSIAKLSDSKLFSEILLKIDGYIKKQPKASEVMGPVEAAPEYKVIVDANNLTVEIENELNIIHKFIRDKYSKRFPE 123
BLAST of DN621418 vs. ExPASy Swiss-Prot
Match: PRP31_MOUSE (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus musculus GN=Prpf31 PE=2 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 7.213e-16 Identity = 51/129 (39.53%), Postives = 73/129 (56.59%), Query Frame = 1 Query: 115 TLADSFLADLEELSDNEADVNEEEGGV--DATNMXXXXXXXXXXXXALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPE 495 +LAD LADLEE ++ EEEGG + L+ D + +++KL S+ F +IM K+E + ++ S +E PEY++IVD N L+V+IENE+ IIH FIRDKY +FPE Sbjct: 2 SLADELLADLEEAAE------EEEGGSYGEEEEEPAIEDVQEETQLDLSGDSVKSIAKLWDSKMFAEIMMKIEEYISKQANASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPE 124
BLAST of DN621418 vs. ExPASy Swiss-Prot
Match: PRP31_HUMAN (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens GN=PRPF31 PE=1 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 1.607e-15 Identity = 51/129 (39.53%), Postives = 71/129 (55.04%), Query Frame = 1 Query: 115 TLADSFLADLEELSDNEADVNEEEGGV--DATNMXXXXXXXXXXXXALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPE 495 +LAD LADLEE ++ EEEGG + L+ D + ++KL S+ F +IM K+E + + S +E PEY++IVD N L+V+IENE+ IIH FIRDKY +FPE Sbjct: 2 SLADELLADLEEAAE------EEEGGSYGEEEEEPAIEDVQEETQLDLSGDSVKTIAKLWDSKMFAEIMMKIEEYISKQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPE 124
BLAST of DN621418 vs. ExPASy Swiss-Prot
Match: PRP31_DANRE (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Danio rerio GN=prpf31 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.964e-13 Identity = 47/134 (35.07%), Postives = 68/134 (50.75%), Query Frame = 1 Query: 115 TLADSFLADLEELSDNEA----DVNEEEGGVDATNMXXXXXXXXXXXXALNYDDLDNVS---KLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPE 495 +LAD LADLEE + + E G ++Y ++V+ KL+ S+ F +IM K+ + N S +E DPEY+LIV N L+V+I+NE+ IIH F+RDKY +FPE Sbjct: 2 SLADELLADLEEAGEEDGLYPGGEEGESDGEPGERQVDGGLEDIPEEMEVDYSSTESVTSIAKLRHSKPFAEIMDKISHYVGNQRKNSEVSGPVEADPEYRLIVAANNLTVEIDNELNIIHKFVRDKYSKRFPE 135 The following BLAST results are available for this feature:
BLAST of DN621418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DN621418 ID=DN621418; Name=DN621418; organism=Citrus sinensis; type=EST; length=495bpback to top |