DN621411

Overview
NameDN621411
Unique NameDN621411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN621411_ssr735 microsatellite DN621411_ssr735:735..746. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: R18A2_ARATH (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 8.522e-52
Identity = 96/110 (87.27%), Postives = 101/110 (91.82%), Query Frame = -1
Query:  188 KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 517
            K P   K   IWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR PCIQIIKTAT+PAKLCKRESTKQFHNSKIKFPLVFRKVRPP+RKL+TTYKA++PNLFM
Sbjct:   69 KNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178          

HSP 2 Score: 144.436 bits (363), Expect = 6.136e-34
Identity = 68/78 (87.18%), Postives = 72/78 (92.31%), Query Frame = -2
Query:  487 MVTFRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 720
            M  FRFHQYQVVGRALPTE D  PKIYRMKLWATNEVRAKSKFWY+LRKLKKVKKSNGQ+LAINEI+EKNPT IKN+G
Sbjct:    1 MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEKNPTTIKNFG 78          
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: R18A3_ARATH (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.230e-51
Identity = 96/112 (85.71%), Postives = 100/112 (89.29%), Query Frame = -1
Query:  188 F*KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 523
            F K P   K   IWLRYQSRTGYHNMYKEYRDTTLNG VEQMY EMASRHRVR PCIQIIKTAT+PAKLCKRE TKQFHNSKIKFPLVFRKVRPP+RKL+TTYKAS+PNLFM
Sbjct:   67 FEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178          

HSP 2 Score: 144.821 bits (364), Expect = 4.698e-34
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = -2
Query:  487 FRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 711
            FRFHQYQVVGRALPTE DEHPKIYRMKLW  NEV AKSKFWY++RKLKKVKKSNGQ+LAINEIFEKNPT IKNYG
Sbjct:    4 FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIFEKNPTTIKNYG 78          
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_CASSA (60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 9.423e-51
Identity = 97/112 (86.61%), Postives = 101/112 (90.18%), Query Frame = -1
Query:  188 F*KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 523
            F K P K K   IWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR PCIQIIKTATIPAKLCKRES+KQFHNSKIKFPLV RK+RPP+RKL+T YKASRPNLFM
Sbjct:   67 FEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178          

HSP 2 Score: 159.073 bits (401), Expect = 2.407e-38
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = -2
Query:  487 MVTFRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 720
            MVTFRFHQYQVVGR LP+ETDEHPKIYRMKLWATNEVRAKSKFWY+LRKLKKVKKSNGQ+LAINEIFEKNPTKIKNYG
Sbjct:    1 MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYG 78          
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_ORYSJ (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.965e-48
Identity = 92/112 (82.14%), Postives = 98/112 (87.50%), Query Frame = -1
Query:  188 F*KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 523
            F K P   K   IWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR PCIQIIKTAT+  KLCKR++TKQFH S IKFPLV+RKVRPPTRKL+TT+KASRPNLFM
Sbjct:   67 FEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178          

HSP 2 Score: 152.14 bits (383), Expect = 2.943e-36
Identity = 71/78 (91.03%), Postives = 73/78 (93.59%), Query Frame = -2
Query:  487 MVTFRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 720
            M  FRFHQYQVVGR LPT TDEHPKIYRMKLWATNEVRAKSKFWY+LRKLKKVKKSNGQ+LAINEIFEKNPT IKNYG
Sbjct:    1 MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYG 78          
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_DROME (60S ribosomal protein L18a OS=Drosophila melanogaster GN=RpL18A PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.211e-43
Identity = 55/95 (57.89%), Postives = 64/95 (67.37%), Query Frame = -1
Query:  227 PNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKL 511
            P K K   IWLRY SR+G HNMY+EYRD T+ GAV Q Y +M +RHR R+  IQIIK  +IPA   +R   KQFH+SKIKFPLV R      RKL
Sbjct:   72 PVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKL 166          

HSP 2 Score: 85.8853 bits (211), Expect = 3.211e-43
Identity = 33/71 (46.48%), Postives = 57/71 (80.28%), Query Frame = -2
Query:  487 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 699
            +Y+VVGR LP+E +    +Y+M+++A + + AKS+FWY+LR+LKK KK+ G++++I +++E +P KIKN+G
Sbjct:    9 EYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFG 79          
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL20_YEAST (60S ribosomal protein L20 OS=Saccharomyces cerevisiae GN=RPL20A PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 3.132e-40
Identity = 41/73 (56.16%), Postives = 64/73 (87.67%), Query Frame = -2
Query:  487 FHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 705
            F +YQV+GR LPTE+   PK++RM+++A+NEV AKS++WY+L+KL KVKK++G++++IN+I E +PTK+KN+G
Sbjct:    4 FKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQINEAHPTKVKNFG 76          

HSP 2 Score: 85.1149 bits (209), Expect = 3.132e-40
Identity = 47/108 (43.52%), Postives = 60/108 (55.56%), Query Frame = -1
Query:  191 PNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKL-CKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 511
            P K K   +W+RY SR+G HNMYKE RD +   AVE +Y +MA+RHR R   I I+K A I      KR+  KQF    +KFPL  R      +K   T+   RP+ F
Sbjct:   69 PTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVKQFLTKDLKFPLPHR-----VQKSTKTFSYKRPSTF 171          
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL20_SCHPO (60S ribosomal protein L20 OS=Schizosaccharomyces pombe GN=rpl20a PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 2.333e-37
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = -1
Query:  191 EPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKL-CKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 514
            +P K K   IW+RY SR+G HNMYKE+RDTT  GAVE MY +MA+RHR R   I+I+K   +  K   +R   KQ  N  +KFPL  R+        +  +   RP+ F
Sbjct:   67 KPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTF 175          

HSP 2 Score: 86.6557 bits (213), Expect = 2.333e-37
Identity = 38/71 (53.52%), Postives = 55/71 (77.46%), Query Frame = -2
Query:  487 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 699
            +YQVVGR +PTE +  PK++RM+L+A NE  AKS++WY+L+ + KVKK+ G+++AINEI E  P K K +G
Sbjct:    5 EYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFG 75          
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_DANRE (60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.052e-25
Identity = 58/111 (52.25%), Postives = 72/111 (64.86%), Query Frame = -1
Query:  191 F*KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 523
            F K P K K   IWLRY SR+G HNMY+EYRD T +GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:   68 FEKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQVIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          

HSP 2 Score: 82.4185 bits (202), Expect = 2.864e-15
Identity = 33/71 (46.48%), Postives = 56/71 (78.87%), Query Frame = -2
Query:  487 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 699
            +Y+VVGR LP+  +  P +YRM+++A N V AKS+FWY++ +L+K+KK++G+++    +FEK+P K+KN+G
Sbjct:    9 EYKVVGRLLPSVKNPAPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGEIVYCGLVFEKSPLKVKNFG 79          
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_HUMAN (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.978e-24
Identity = 57/111 (51.35%), Postives = 71/111 (63.96%), Query Frame = -1
Query:  191 F*KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 523
            F K P + K   IWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:   68 FEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          

HSP 2 Score: 86.6557 bits (213), Expect = 1.518e-16
Identity = 35/71 (49.30%), Postives = 56/71 (78.87%), Query Frame = -2
Query:  487 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 699
            +Y+VVGR LPT     P +YRM+++A N V AKS+FWY++ +LKK+KKS+G+++   ++FEK+P ++KN+G
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFG 79          
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_BOVIN (60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.978e-24
Identity = 57/111 (51.35%), Postives = 71/111 (63.96%), Query Frame = -1
Query:  191 F*KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 523
            F K P + K   IWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:   68 FEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          

HSP 2 Score: 86.6557 bits (213), Expect = 1.518e-16
Identity = 35/71 (49.30%), Postives = 56/71 (78.87%), Query Frame = -2
Query:  487 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 699
            +Y+VVGR LPT     P +YRM+++A N V AKS+FWY++ +LKK+KKS+G+++   ++FEK+P ++KN+G
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFG 79          
The following BLAST results are available for this feature:
BLAST of DN621411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
R18A2_ARATH8.522e-5287.2760S ribosomal protein L18a-2 OS=Arabidopsis thalia... [more]
R18A3_ARATH4.230e-5185.7160S ribosomal protein L18a-3 OS=Arabidopsis thalia... [more]
RL18A_CASSA9.423e-5186.6160S ribosomal protein L18a OS=Castanea sativa GN=R... [more]
RL18A_ORYSJ1.965e-4882.1460S ribosomal protein L18a OS=Oryza sativa subsp. ... [more]
RL18A_DROME3.211e-4357.8960S ribosomal protein L18a OS=Drosophila melanogas... [more]
RL20_YEAST3.132e-4056.1660S ribosomal protein L20 OS=Saccharomyces cerevis... [more]
RL20_SCHPO2.333e-3744.0460S ribosomal protein L20 OS=Schizosaccharomyces p... [more]
RL18A_DANRE3.052e-2552.2560S ribosomal protein L18a OS=Danio rerio GN=rpl18... [more]
RL18A_HUMAN1.978e-2451.3560S ribosomal protein L18a OS=Homo sapiens GN=RPL1... [more]
RL18A_BOVIN1.978e-2451.3560S ribosomal protein L18a OS=Bos taurus GN=RPL18A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621411 ID=DN621411; Name=DN621411; organism=Citrus sinensis; type=EST; length=751bp
CCCTTTTTTTCACAAGCTCTTCATCAATGAACCAAATCAAACAATCATCA
AAATTTGAAAGATTGATTTTGCGGAATGTTTGGGCTCACATGTAAGGTAA
AATTTGTCTTGCCTGCTCTCTGCATAACAAACCAGTCAAAACAACCAGGC
TTTCAGATGACAAAACCAGCAGGCAATAAGCCGGTTACATGAACAAGTTA
GGCCTGGATGCCTTGTATGTCGTCCTGAGCTTCCTTGTTGGGGGCCTCAC
CTTCCGGAACACCAAGGGGAATTTGATTTTGGAGTTGTGGAACTGCTTGG
TGCTCTCCCTCTTGCAGAGCTTTGCTGGGATGGTAGCGGTCTTAATGATT
TGAATGCAAGGAGACCTCACCCTATGGCGGGACGCCATCTCATTGTACAT
TTGTTCAACAGCCCCATTAAGAGTTGTGTCCCTGTATTCCTTATACATGT
TGTGATAACCAGTTCGGCTCTGATACCGAAGCCAGATCCGTAATTCTTTA
TCTTTGTTGGGTTCTTTTCAAAAATCTCATTGATGGCCAAAACCTGCCCA
TTGCTCTTCTTCACTTTCTTCAGCTTCCTCAAGTAATACCAGAACTTAGA
TTTGGCACGGACCTCATTGGTGGCCCAAAGCTTCATGCGGTAGATCTTGG
GATGCTCATCCGTCTCCGTCGGCAAAGCTCTTCCCACAACTTGGTACTGG
TGAAACCTGAAAGTAACCATTCTCATACGAAATTAGAGAGAGAGAGGCTG
C
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