DN621401

Overview
NameDN621401
Unique NameDN621401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2291 contig Csv1_Contig2291:116..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.939e-71
Identity = 121/141 (85.82%), Postives = 132/141 (93.62%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFCPPN  LSNDNGGWCNPPLQHFD+AEPAFLQIAQYRAGIVP+SFRR+PC KKGGIRFT+NGHSYFNLVL++NVGGAGDVH+VSIKGSKT  WQAMSRNWGQNWQSNSY+N QSLSFQVT SDGRT+ SN+V P+NW
Sbjct:  102 TATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNW 242          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.401e-68
Identity = 118/140 (84.29%), Postives = 124/140 (88.57%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATN CPPN AL ND+GGWCNPP  HFDMAEPAFLQI  YRAGIVP+S+RR+PC KKGGIRFT+NGHSYFNLVLVTNV G GDV SVSIKGS TGWQ MSRNWGQNWQSNSYL+GQSLSFQV  SDGRTVTSNNVVPA W
Sbjct:  101 TATNLCPPNYALPNDDGGWCNPPRPHFDMAEPAFLQIGVYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGPGDVQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGW 240          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.121e-68
Identity = 117/140 (83.57%), Postives = 126/140 (90.00%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFCPPN  L +D+GGWCNPP  HFDMAEPAFL IAQYRAGIVP+SFRR+PC KKGG+RFTVNGHSYFNLVLVTNV GAGDV SVSIKGS+TGWQ MSRNWGQNWQSN++L+GQSLSFQVTASDGRTVTSNNV    W
Sbjct:   96 TATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGW 235          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.121e-68
Identity = 117/140 (83.57%), Postives = 126/140 (90.00%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFCPPN  L +D+GGWCNPP  HFDMAEPAFL IAQYRAGIVP+SFRR+PC KKGG+RFTVNGHSYFNLVLVTNV GAGDV SVSIKGS+TGWQ MSRNWGQNWQSN++L+GQSLSFQVTASDGRTVTSNNV    W
Sbjct:   96 TATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGW 235          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.642e-67
Identity = 111/140 (79.29%), Postives = 128/140 (91.43%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFCPPN AL+N+NGGWCNPPL+HFD+A+P F +IAQYRAGIVP+S+RR+PC ++GGIRFT+NGHSYFNLVL+TNVGGAGDVHS +IKGS+T WQAMSRNWGQNWQSNSYLNGQ+LSF+VT SDGRTV S N  PA W
Sbjct:   98 TATNFCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGW 237          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.815e-66
Identity = 108/140 (77.14%), Postives = 126/140 (90.00%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFCPPN AL N+ GGWCNPP QHFD+++P F +IAQYRAGIVP+++RR+PC ++GGIRFT+NGHSYFNLVL+TNVGGAGDVHS  +KGS+TGWQAMSRNWGQNWQSNSYLNGQSLSF+VT SDG+T+ SNNV  A W
Sbjct:   99 TATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGW 238          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 8.499e-66
Identity = 107/140 (76.43%), Postives = 128/140 (91.43%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFCPPN AL N+ GGWCNPPL HFD+++P F +IAQY+AG+VP+S+RR+PC ++GGIRFT+NGHSYFNLVLVTNVGGAGDVHSV++KGS+T WQ MSRNWGQNWQSN+ LNGQ+LSF+VTASDGRTV SNN+ PA+W
Sbjct:  102 TATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASW 241          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 247.284 bits (630), Expect = 5.509e-65
Identity = 111/141 (78.72%), Postives = 129/141 (91.49%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            +ATNFCPPN AL+NDNGGWCNPPL+HFD+AEPAFLQIAQYRAGIVP++FRR+PC K GGIRFT+NG+ YF+LVL+TNVGGAGD+ +VS+KGSKT  WQ+MSRNWGQNWQSN+YL GQSLSFQVT SDGRTV S +VVP +W
Sbjct:  104 SATNFCPPNFALANDNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRRVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLKGSKTDQWQSMSRNWGQNWQSNTYLRGQSLSFQVTDSDGRTVVSYDVVPHDW 244          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.829e-61
Identity = 102/140 (72.86%), Postives = 122/140 (87.14%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFCPPNLA  +DNGGWCNPP +HFD+A P FL+IAQYRAGIVP+S+RR+PC K+GGIRFT+NGH YFNLVL+TNV GAGD+   S+KGS+TGW ++SRNWGQNWQSN+ L GQ+LSF+VT SD RT TS N+VP+NW
Sbjct:  105 TATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKRGGIRFTINGHRYFNLVLITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNW 244          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.232e-61
Identity = 101/140 (72.14%), Postives = 120/140 (85.71%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            T TNFCPPN A +N+ GGWCNPP  HFD+A+P FL+IAQY+AG+VP+ +RR+ C +KGGIRFT+NGHSYFNLVL+TNV GAGDV SVSIKG+ T WQ+MSRNWGQNWQSN+ L+GQ+LSF+VT SDGRTV SNN  P NW
Sbjct:  101 TGTNFCPPNFAQANNAGGWCNPPQHHFDLAQPIFLRIAQYKAGVVPVQYRRVACRRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNW 240          
The following BLAST results are available for this feature:
BLAST of DN621401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXPA8_ARATH3.939e-7185.82Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXPA2_ORYSJ1.401e-6884.29Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSJ3.121e-6883.57Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI3.121e-6883.57Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXP10_ARATH2.642e-6779.29Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA1_ARATH3.815e-6677.14Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP15_ARATH8.499e-6676.43Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXPA2_ARATH5.509e-6578.72Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXPA4_ARATH2.829e-6172.86Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXP14_ARATH8.232e-6172.14Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621401 ID=DN621401; Name=DN621401; organism=Citrus sinensis; type=EST; length=675bp
CGTTCATTCAATTGGAGTAATAACTATATATAGAACACAATCATTTCTAT
TTATAGAGGCCTAGCGGGTGCCAACAGACCACCACAGCAACAAGACAGGC
CACATCGGCCAGGCCTCAGCCTCACCTACCCCTATTCTCACCCTTTCTCC
CTCACAAACACAATGCCAAATTCAATTAAATATACAATTTCTGATTCACT
TTTTTAAAATCTTAAAATCTAAAACTGACCACCCTCAAAGGTTTGCCCAA
ATTGCCAATTTGCAGGCACAACATTGTTGCTAGTCACAGTCCTGCCGTCA
CTGGCTGTCACTTGGAAAGAAAGACTTTGGCCGTTAAGATAAGAATTGCT
CTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTGCCATCCAGTCTTTG
AACCCTTGATTGATACTGAATGTACATCTCCTGCTCCTCCGACATTTGTG
ACCAAAACCAGGTTGAAGTATGAGTGTCCATTGACGGTAAACCTTATTCC
TCCTTTCTTCGCACACGGGATCCTTCTGAAGGAAATTGGGACGATGCCGG
CGCGGTATTGGGCAATTTGCAAGAAAGCGGGCTCAGCCATGTCAAAGTGC
TGGAGGGGAGGATTGCACCAACCGCCGTTGTCGTTAGACAGGGCAAGGTT
AGGTGGGCAGAAGTTGGTGGCGGTG
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