DN621390

Overview
NameDN621390
Unique NameDN621390
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9249 contig Csv1_Contig9249:814..1218. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621390 vs. ExPASy Swiss-Prot
Match: CD48D_ARATH (Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.230e-28
Identity = 67/84 (79.76%), Postives = 69/84 (82.14%), Query Frame = -3
Query:  179 AEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDA------APPGAD---GGSDPFASSAGGAEDDDLYS 403
            AEIKA HFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDA      A PGA    GG DPFA+S G A+DDDLYS
Sbjct:  732 AEIKAGHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAPTGTTGAFPGAAATVGGVDPFATSGGAADDDDLYS 815          
BLAST of DN621390 vs. ExPASy Swiss-Prot
Match: CDC48_SOYBN (Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.522e-27
Identity = 61/75 (81.33%), Postives = 67/75 (89.33%), Query Frame = -3
Query:  179 AEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAAPPGADGGSDPFASSAGGAEDDDLYS 403
            AEIKA HFEESMK+ARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP++       GSDPFA+SAGGA++DDLYS
Sbjct:  734 AEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPESG-DRTTTGSDPFAASAGGADEDDLYS 807          
BLAST of DN621390 vs. ExPASy Swiss-Prot
Match: CD48E_ARATH (Cell division control protein 48 homolog E OS=Arabidopsis thaliana GN=CDC48E PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.860e-25
Identity = 59/78 (75.64%), Postives = 64/78 (82.05%), Query Frame = -3
Query:  179 AEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAAPPGADGG---SDPFASSAGGAEDDDLYS 403
            +EI+A HFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF   A  G   G   +DPFA+SA  A+DDDLYS
Sbjct:  733 SEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFDSTAGVGRTTGVAAADPFATSAAAADDDDLYS 810          
BLAST of DN621390 vs. ExPASy Swiss-Prot
Match: CD48A_ARATH (Cell division control protein 48 homolog A OS=Arabidopsis thaliana GN=CDC48A PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.173e-25
Identity = 60/77 (77.92%), Postives = 67/77 (87.01%), Query Frame = -3
Query:  179 AEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAAPPGADGG-SDPFASSAGGA-EDDDLYS 403
            +EIKA HFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF ++A  GA  G +DPFA+SA  A +DDDLY+
Sbjct:  733 SEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFENSAGSGATTGVADPFATSAAAAGDDDDLYN 809          
BLAST of DN621390 vs. ExPASy Swiss-Prot
Match: CDC48_CAPAN (Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.413e-25
Identity = 57/74 (77.03%), Postives = 62/74 (83.78%), Query Frame = -3
Query:  179 EIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAAPPGADGGSDPFASSAGGAEDDDLYS 400
            EIK  HFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFG+EFRF D +  GA   +DPFA+S   A+DDDLYS
Sbjct:  733 EIKPAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFADTS-GGATAAADPFATSNAAADDDDLYS 805          
BLAST of DN621390 vs. ExPASy Swiss-Prot
Match: TERA2_CAEEL (Transitional endoplasmic reticulum ATPase homolog 2 OS=Caenorhabditis elegans GN=cdc-48.2 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.757e-18
Identity = 47/79 (59.49%), Postives = 56/79 (70.89%), Query Frame = -3
Query:  179 EIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAAPP-----GADGGSDPFASSAGGAEDDDLYS 400
            EI   HFEE+MK+ARRSV+D DIRKY+ FAQTLQQSRGFG+ F+FP  AP      G +GGS       GG +DDDLY+
Sbjct:  739 EITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFPGEAPSAGQPVGGNGGS-------GGNDDDDLYN 810          
BLAST of DN621390 vs. ExPASy Swiss-Prot
Match: TERA_DROME (Transitional endoplasmic reticulum ATPase TER94 OS=Drosophila melanogaster GN=TER94 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.907e-18
Identity = 45/74 (60.81%), Postives = 53/74 (71.62%), Query Frame = -3
Query:  179 EIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAAPPGADGGSDPFASSAGGAEDDDLYS 400
            EI + HFEE+MK+ARRSVSD DIRKY+ FAQTLQQSRGFG  FRFP      +  G++   +S G   DDDLYS
Sbjct:  728 EITSAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGQNFRFPGQTGNTSGSGNNLPVNSPGDNGDDDLYS 801          
BLAST of DN621390 vs. ExPASy Swiss-Prot
Match: TERA1_CAEEL (Transitional endoplasmic reticulum ATPase homolog 1 OS=Caenorhabditis elegans GN=cdc-48.1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.086e-17
Identity = 43/74 (58.11%), Postives = 53/74 (71.62%), Query Frame = -3
Query:  179 EIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAAPPGADGGSDPFASSAGGAEDDDLYS 400
            EI   HFEE+MK+ARRSV+D DIRKY+ FAQTLQQSRGFG+ F+F     PG   GSD  ++     +DDDLY+
Sbjct:  741 EITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKF-----PGEQRGSDAPSAPVPAQDDDDLYN 809          
BLAST of DN621390 vs. ExPASy Swiss-Prot
Match: TERA_XENTR (Transitional endoplasmic reticulum ATPase OS=Xenopus tropicalis GN=vcp PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = -3
Query:  182 EIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAAPPGADGGSDPFASSAGGA-------EDDDLY 400
            EI+  HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRF    P G  GG+ P   + GG+       E+DDLY
Sbjct:  730 EIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRF----PAGGQGGAGPSQGAGGGSGGSHFNEEEDDLY 804          
BLAST of DN621390 vs. ExPASy Swiss-Prot
Match: TERA_XENLA (Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 47/76 (61.84%), Postives = 52/76 (68.42%), Query Frame = -3
Query:  182 EIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAAPPGADGGSDPFASSAGG---AEDDDLY 400
            EI+  HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP     GA         S GG    EDDDLY
Sbjct:  730 EIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPAGGQSGAGPSPGAGGGSGGGHFTEEDDDLY 804          
The following BLAST results are available for this feature:
BLAST of DN621390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
CD48D_ARATH5.230e-2879.76Cell division control protein 48 homolog D OS=Arab... [more]
CDC48_SOYBN1.522e-2781.33Cell division cycle protein 48 homolog OS=Glycine ... [more]
CD48E_ARATH1.860e-2575.64Cell division control protein 48 homolog E OS=Arab... [more]
CD48A_ARATH3.173e-2577.92Cell division control protein 48 homolog A OS=Arab... [more]
CDC48_CAPAN5.413e-2577.03Cell division cycle protein 48 homolog OS=Capsicum... [more]
TERA2_CAEEL3.757e-1859.49Transitional endoplasmic reticulum ATPase homolog ... [more]
TERA_DROME4.907e-1860.81Transitional endoplasmic reticulum ATPase TER94 OS... [more]
TERA1_CAEEL7.086e-1758.11Transitional endoplasmic reticulum ATPase homolog ... [more]
TERA_XENTR1.209e-1658.75Transitional endoplasmic reticulum ATPase OS=Xenop... [more]
TERA_XENLA1.209e-1661.84Transitional endoplasmic reticulum ATPase OS=Xenop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621390 ID=DN621390; Name=DN621390; organism=Citrus sinensis; type=EST; length=405bp
TATATCAAAATAGAGAATTGCGTTCCAGCAGCCTAAACTCATTCAACCTT
TTCGGCTTTATGGCAGAAACATTGAAGCTTTTGACAAATCATATGGCGAA
TCGTCAAATACATAGGTAAACCAACATCAGCATAAATTAGACAGCAAACT
GATAGACTTTAAACATGGAGATAATCTAACTGTAAAGATCGTCGTCTTCT
GCGCCACCTGCAGAAGACGCAAAAGGATCTGATCCGCCATCAGCACCAGG
GGGAGCAGCATCAGGAAACCTAAATTCACTTCCAAACCCTCTTGACTGCT
GCAATGTTTGAGCAAATGCTTGGTATTTGCGTATGTCAGCATCACTGACA
CTTCTACGAGCATACTTCATTGATTCCTCGAAATGCACAGCTTTAATCTC
AGCCT
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