DN621009

Overview
NameDN621009
Unique NameDN621009
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621009 vs. ExPASy Swiss-Prot
Match: YTDC1_RAT (YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 50/153 (32.68%), Postives = 74/153 (48.37%), Query Frame = 2
Query:  284 D*KDMSSDTAKENASVVDSSVTEKHDVGNSDDPESSSYKANE------HRCPSLAKEAKAGHSNGQ----------LENSTDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFXGYAQMMS 694
            D +  +SD+  E+ S  D SV        SD+ +    +A         R  S A E+ AG                ++ T   K  L + R+F+IKS NH+N+ L+  K +W+T  +NE  L  AF ++  VILIFSV  SG F G+A++ S
Sbjct:  268 DTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKSVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSS 420          
BLAST of DN621009 vs. ExPASy Swiss-Prot
Match: YTDC1_HUMAN (YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12
Identity = 50/153 (32.68%), Postives = 74/153 (48.37%), Query Frame = 2
Query:  284 D*KDMSSDTAKENASVVDSSVTEKHDVGNSDDPESSSYKANE------HRCPSLAKEAKAGHSNGQ----------LENSTDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFXGYAQMMS 694
            D +  +SD+  E+ S  D SV        SD+ +    +A         R  S A E+ AG                ++ T   K  L + R+F+IKS NH+N+ L+  K +W+T  +NE  L  AF ++  VILIFSV  SG F G+A++ S
Sbjct:  265 DTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSS 417          
BLAST of DN621009 vs. ExPASy Swiss-Prot
Match: C3H45_ORYSJ (Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica GN=Os06g0677700 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 2
Query:  506 TRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFXGYAQMMSSVG 703
            +RYFI+KS N +N+++S+++ IWATQ  NE  L EAF +   VILIFS+N +  F G A+M S +G
Sbjct:  260 SRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESIENVILIFSINRTRNFQGCAKMTSRIG 325          
BLAST of DN621009 vs. ExPASy Swiss-Prot
Match: CPSF_ARATH (Cleavage and polyadenylation specificity factor CPSF30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 2
Query:  509 RYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFXGYAQMMSSVG 703
            RYF++KS N +N +LS+++ +WATQ  NE  L EAF +   VILIFSVN +  F G A+M S +G
Sbjct:  238 RYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIG 302          
The following BLAST results are available for this feature:
BLAST of DN621009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YTDC1_RAT5.620e-1332.68YTH domain-containing protein 1 OS=Rattus norvegic... [more]
YTDC1_HUMAN1.252e-1232.68YTH domain-containing protein 1 OS=Homo sapiens GN... [more]
C3H45_ORYSJ1.384e-1150.00Zinc finger CCCH domain-containing protein 45 OS=O... [more]
CPSF_ARATH3.084e-1150.77Cleavage and polyadenylation specificity factor CP... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06B23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006B23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621009 ID=DN621009; Name=DN621009; organism=Citrus sinensis; type=EST; length=727bp
TGCGATATAGTAGTTTTCTACGGAACTGGAATCCTTAAAGTCAATGCCTG
GCCTTCTACCTATATCATGTTATTACCATCTCCTTCTTTTTTGCTTAGTA
ACTGATCTTTTATTTTCTTCTAATGTGATTTATGGTTATTTCTGATTCAG
TTGTTAGTTGTTGATGATCATAAGAAGTATTTTTATTTTTTATATGAGTT
TATGTTTATTTTTTTTAACCTCCGAGCTAGAATGTACACTTCCGGATTGT
ATCTTCAATATATTCCTGCATTCTGACGTAGGAGATTAAAAGGATATGTC
GTCTGATACTGCTAAAGAAAATGCTTCTGTGGTCGATTCATCGGTGACTG
AAAAACATGATGTGGGGAATTCAGATGATCCAGAGAGCTCAAGCTACAAA
GCTAACGAGCATCGCTGTCCGTCTCTGGCCAAAGAAGCAAAAGCAGGGCA
TTCTAATGGGCAGTTGGAAAATTCTACGGACAACAACAAGGGTAAATTGT
ATAATACAAGATATTTTATCATTAAGAGTTTGAATCATCAAAATATCCAA
CTATCAATCGAGAAGGAGATTTGGGCTACTCAGGTCATGAATGAACCAAT
TTTGGAGGAAGCCTTTCATAACTCTGGTAAAGTCATTCTTATATTTAGTG
TCAACATGAGTGGTTTCTTTNCAGGGTATGCCCAAATGATGTCTTCTGTT
GGGTGGAGGCGAGACAATGTCTGGAGT
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